DY270940

Overview
NameDY270940
Unique NameDY270940
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1252
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY270940 vs. ExPASy Swiss-Prot
Match: GID1_ORYSJ (Gibberellin receptor GID1 OS=Oryza sativa subsp. japonica GN=GID1 PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.397e-19
Identity = 64/202 (31.68%), Postives = 94/202 (46.53%), Query Frame = 3
Query:  120 DGTIERYLNTVY---VPPGLDTATGVQSKDVVVSPETSVKARIFIPKIDGPPQK---------------------LPLLVHYHGGAFSIASAFDTNGTNYLNSLVSHGNIIAVSIDYRLAPEHPLPIAYDDSWAALQWVATHSNGSGPEPWLNKYADL-GRFCLEGESAGANIAHHVAVRAGSTGLAGLKITGVLAVHPFFG 650
            DGT ER L       VP       GV S D ++     ++ RI+    +G  ++                      P+++ +HGG+F  +SA  T   +     V     + VS++YR APEH  P AYDD W AL+WV +       +P++    D   R  L G+S+G NIAHHVAVRA      G+K+ G + ++  FG
Sbjct:   38 DGTFERDLGEYLDRRVPANARPLEGVSSFDHIIDQSVGLEVRIYRAAAEGDAEEGAAAVTRPILEFLTDAPAAEPFPVIIFFHGGSFVHSSASSTIYDSLCRRFVKLSKGVVVSVNYRRAPEHRYPCAYDDGWTALKWVMS-------QPFMRSGGDAQARVFLSGDSSGGNIAHHVAVRAAD---EGVKVCGNILLNAMFG 229          
BLAST of DY270940 vs. ExPASy Swiss-Prot
Match: GI1L1_ARATH (Probable gibberellin receptor GID1L1 OS=Arabidopsis thaliana GN=GID1L1 PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.397e-19
Identity = 68/214 (31.78%), Postives = 105/214 (49.07%), Query Frame = 3
Query:   69 NTKQVTHDFPPYFKVYK--DGTIERYLNTVY---VPPGLDTATGVQSKDVVVSPETSVKARIFIPKI---DGPPQKL-----------PLLVHYHGGAFSIASAFDTNGTNYLNSLVSHGNIIAVSIDYRLAPEHPLPIAYDDSWAALQWVATHSNGSGPEPWLNKYADLG-RFCLEGESAGANIAHHVAVRAGSTGLAGLKITGVLAVHPFFG 650
            NT  +  +F   + + +  DGT  R+L       V    +   GV S DV++    ++ +R++ P     + PP  L           P+++ +HGG+F+ +SA           LV     + VS++YR APE+P P AYDD W AL WV + S       WL    D      L G+S+G NIAH+VA+RAG    +G+ + G + ++P FG
Sbjct:   19 NTWVLISNFKVAYNILRRPDGTFNRHLAEYLDRKVTANANPVDGVFSFDVLIDRRINLLSRVYRPAYADQEQPPSILDLEKPVDGDIVPVILFFHGGSFAHSSANSAIYDTLCRRLVGLCKCVVVSVNYRRAPENPYPCAYDDGWIALNWVNSRS-------WLKSKKDSKVHIFLAGDSSGGNIAHNVALRAGE---SGIDVLGNILLNPMFG 222          
BLAST of DY270940 vs. ExPASy Swiss-Prot
Match: GI1L3_ARATH (Probable gibberellin receptor GID1L3 OS=Arabidopsis thaliana GN=GID1L3 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.825e-19
Identity = 64/193 (33.16%), Postives = 96/193 (49.74%), Query Frame = 3
Query:  120 DGTIERYLNTVY---VPPGLDTATGVQSKDVVVSPETSVKARIFIPKIDGPPQKL------------PLLVHYHGGAFSIASAFDTNGTNYLNSLVSHGNIIAVSIDYRLAPEHPLPIAYDDSWAALQWVATHSNGSGPEPWLNKYADLG-RFCLEGESAGANIAHHVAVRAGSTGLAGLKITGVLAVHPFFG 650
            DGT  R+L       VP   +   GV S DV++  +T++ +R++ P   G    +            P++V +HGG+F+ +SA           LV     + VS++YR APE+  P AYDD WA L+WV + S       WL    D   R  L G+S+G NI H+VAVRA     + + + G + ++P FG
Sbjct:   38 DGTFNRHLAEFLDRKVPANANPVNGVFSFDVIIDRQTNLLSRVYRPADAGTSPSITDLQNPVDGEIVPVIVFFHGGSFAHSSANSAIYDTLCRRLVGLCGAVVVSVNYRRAPENRYPCAYDDGWAVLKWVNSSS-------WLRSKKDSKVRIFLAGDSSGGNIVHNVAVRAVE---SRIDVLGNILLNPMFG 220          
BLAST of DY270940 vs. ExPASy Swiss-Prot
Match: GI1L2_ARATH (Probable gibberellin receptor GID1L2 OS=Arabidopsis thaliana GN=GID1L2 PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 5.310e-19
Identity = 73/215 (33.95%), Postives = 105/215 (48.84%), Query Frame = 3
Query:   69 NTKQVTHDFPPYFKVYK--DGTIERYLNTVY---VPPGLDTATGVQSKDVVVSPETSVKARIFIP---------------KIDGPPQKLPLLVHYHGGAFSIASAFDTNGTNYLNSLVSHGNIIAVSIDYRLAPEHPLPIAYDDSWAALQWVATHSNGSGPEPWLNKYADLGRFC-LEGESAGANIAHHVAVRAGSTGLAGLKITGVLAVHPFFG 650
            NT  +  +F   +KV +  DG+  R L       VP       GV S D V S  T++  RI+ P               K     + +P+L+ +HGG+F+ +SA       +   LV+   ++ VS+DYR +PEH  P AYDD W AL WV +         WL    D   +  L G+S+G NIAH+VAVRA +    G+K+ G + +HP FG
Sbjct:   19 NTWVLISNFKLAYKVLRRPDGSFNRDLAEFLDRKVPANSFPLDGVFSFDHVDST-TNLLTRIYQPASLLHQTRHGTLELTKPLSTTEIVPVLIFFHGGSFTHSSANSAIYDTFCRRLVTICGVVVVSVDYRRSPEHRYPCAYDDGWNALNWVKS-------RVWLQSGKDSNVYVYLAGDSSGGNIAHNVAVRATN---EGVKVLGNILLHPMFG 222          
The following BLAST results are available for this feature:
BLAST of DY270940 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
GID1_ORYSJ1.397e-1931.68Gibberellin receptor GID1 OS=Oryza sativa subsp. j... [more]
GI1L1_ARATH1.397e-1931.78Probable gibberellin receptor GID1L1 OS=Arabidopsi... [more]
GI1L3_ARATH1.825e-1933.16Probable gibberellin receptor GID1L3 OS=Arabidopsi... [more]
GI1L2_ARATH5.310e-1933.95Probable gibberellin receptor GID1L2 OS=Arabidopsi... [more]
back to top
Properties
Property NameValue
Genbank descriptionKN0AAP8YF05FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270940 ID=DY270940; Name=DY270940; organism=Citrus clementina; type=EST; length=1252bp
GATAACCAACATCACCATCAACTCCTTGTCACTCATCCATCATCCCCAAA
TCTTCTTCAATGGCTTCAAACACTAAACAAGTTACCCATGATTTCCCACC
CTACTTCAAAGTTTACAAAGATGGCACCATAGAGAGGTATCTTAATACAG
TTTACGTTCCCCCAGGCCTAGACACAGCAACCGGAGTCCAATCCAAAGAC
GTCGTGGTCTCGCCGGAGACCAGCGTTAAGGCCCGTATTTTCATTCCAAA
AATCGACGGCCCACCCCAAAAGCTTCCACTCCTGGTTCACTACCATGGCG
GAGCTTTTAGCATAGCCTCGGCCTTTGATACAAATGGAACTAATTATCTC
AATTCGCTTGTGTCCCATGGTAATATCATTGCCGTATCCATTGATTATAG
GCTTGCCCCAGAGCATCCTCTCCCAATTGCTTATGATGACTCATGGGCCG
CGCTGCAGTGGGTTGCTACCCACTCCAACGGGTCAGGCCCCGAACCTTGG
CTCAACAAATATGCCGACCTGGGGCGGTTTTGCTTGGAGGGCGAGAGTGC
CGGGGCGAATATAGCTCACCACGTGGCGGTCCGAGCTGGCAGTACCGGCT
TGGCTGGGTTGAAAATTACTGGGGTACTTGCAGTGCACCCATTCTTTGGA
GTCAAGCAGCATGATGCACTGTACAAGTATGTATGTCCAAGTAGCGATTT
GGATGATGACCCCGATTTGAACCCAGAAGTGGATCCGAACTTGAAGAAAA
TGGCTTGCAAGCGATTTGTTGGTGTGTGTGGCCGAGAACGATGAGCTCAA
AGATAAAGGCGGGGCTTATTATGAGACTTTGGCTAAAAGTGAATTGGGGT
GCAGAGTAGAAATTTAACAAACTCTTGATGGGGAACATTGCTTTCAAATG
TTTAGTGATCCCAATAATGAAAAGGTTAAGCCCTTGGGGAAAAAAAGGTT
GAATTCCTCCTACAATAAAACCGAACCTTAACGTTTTAAAAAAAAAAAAA
AAAAAAAAAAACCCAACTTTCTTGTAAAAAATTTGGAATTTAAAAAAAAC
ATTTCTTTATAAATTTTTTTTCAACAAAAAAGGCCCCATATAACCAAAAA
AAAAAATATTTTTTTTTTCCCCCCCCCACGTGAATAACCCCTATAAAAAT
GGAACTCTAAAAATAATAAGGGCCACAAAAACCTTTTTCTCCGGCGGGAA
CCCCCCGTGGGCGCCGCGAGTAGCTTCCCAAAAAAAAACACACCAAAATA
AA
back to top