DY270949

Overview
NameDY270949
Unique NameDY270949
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1194
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14611 contig Ccv1_Contig14611:2..1195. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY270949 vs. ExPASy Swiss-Prot
Match: MYB05_ANTMA (Myb-related protein 305 OS=Antirrhinum majus GN=MYB305 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 8.062e-40
Identity = 60/119 (50.42%), Postives = 76/119 (63.87%), Query Frame = 2
Query:  200 KRECNSSEEDQQELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGN*IHA*KFFTS*CLLYMLVTKLA*LIISGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQFLILELHSKWGNR 556
            K+ CNS +    E+R+GPWT+EED +L +YI  HGEG WN +A+ AG                             LKRTGKSCRLRWLNYL+PD++RGN+TP+EQ LI+ELH+KWGNR
Sbjct:    3 KKPCNSQDV---EVRKGPWTMEEDLILINYIANHGEGVWNSLARSAG-----------------------------LKRTGKSCRLRWLNYLRPDVRRGNITPEEQLLIMELHAKWGNR 89          

HSP 2 Score: 61.6178 bits (148), Expect = 8.062e-40
Identity = 29/41 (70.73%), Postives = 33/41 (80.49%), Query Frame = 3
Query:  666 RWSKIAQCLPGRTDNEIKNYWRTRVQKQARQLNIESNSETF 788
            RWSKIA+ LPGRTDNEIKNYWRTR+QK   Q   +S+S TF
Sbjct:   89 RWSKIAKTLPGRTDNEIKNYWRTRIQKHMEQ-GDQSSSTTF 128          
BLAST of DY270949 vs. ExPASy Swiss-Prot
Match: MYB40_ANTMA (Myb-related protein 340 OS=Antirrhinum majus GN=MYB340 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.602e-37
Identity = 59/119 (49.58%), Postives = 76/119 (63.87%), Query Frame = 2
Query:  200 KRECNSSEEDQQELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGN*IHA*KFFTS*CLLYMLVTKLA*LIISGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQFLILELHSKWGNR 556
            K+ CNS +    E+R+GPWT+EED +L ++I  HGEG WN +A+ AG                             LKRTGKSCRLRWLNYL+PD++RGN+TP+EQ LI+ELH+KWGNR
Sbjct:    3 KKPCNSHDV---EVRKGPWTMEEDLILINFISNHGEGVWNTIARSAG-----------------------------LKRTGKSCRLRWLNYLRPDVRRGNITPEEQLLIMELHAKWGNR 89          

HSP 2 Score: 54.6842 bits (130), Expect = 1.602e-37
Identity = 25/32 (78.12%), Postives = 28/32 (87.50%), Query Frame = 3
Query:  666 RWSKIAQCLPGRTDNEIKNYW-RTRVQKQARQ 758
            RWSKIA+ LPGRTDNEIKNYW RTR+QK  +Q
Sbjct:   89 RWSKIAKHLPGRTDNEIKNYWNRTRIQKHIKQ 120          
BLAST of DY270949 vs. ExPASy Swiss-Prot
Match: MYB59_ARATH (Transcription factor MYB59 OS=Arabidopsis thaliana GN=MYB59 PE=2 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 9.816e-34
Identity = 52/109 (47.71%), Postives = 67/109 (61.47%), Query Frame = 2
Query:  230 QQELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGN*IHA*KFFTS*CLLYMLVTKLA*LIISGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQFLILELHSKWGNR 556
            Q+E R+GPWT +ED LL +++H  G+ RW+ VAK                             +SGL RTGKSCRLRW+NYL P +KRG +TPQE+ L+LELH+KWGNR
Sbjct:    5 QEEYRKGPWTEQEDILLVNFVHLFGDRRWDFVAK-----------------------------VSGLNRTGKSCRLRWVNYLHPGLKRGKMTPQEERLVLELHAKWGNR 84          

HSP 2 Score: 55.8398 bits (133), Expect = 9.816e-34
Identity = 23/31 (74.19%), Postives = 29/31 (93.55%), Query Frame = 3
Query:  666 RWSKIAQCLPGRTDNEIKNYWRTRVQKQARQ 758
            RWSKIA+ LPGRTDNEIKNYWRT ++K+A++
Sbjct:   84 RWSKIARKLPGRTDNEIKNYWRTHMRKKAQE 114          
BLAST of DY270949 vs. ExPASy Swiss-Prot
Match: MYB48_ARATH (Transcription factor MYB48 OS=Arabidopsis thaliana GN=MYB48 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.334e-32
Identity = 49/105 (46.67%), Postives = 64/105 (60.95%), Query Frame = 2
Query:  242 RRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGN*IHA*KFFTS*CLLYMLVTKLA*LIISGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQFLILELHSKWGNR 556
            R+GPWT +ED LL +++H  G+ RW+ +AK                             +SGL RTGKSCRLRW+NYL P +KRG +TPQE+ L+LELH+KWGNR
Sbjct:    8 RKGPWTEQEDILLVNFVHLFGDRRWDFIAK-----------------------------VSGLNRTGKSCRLRWVNYLHPGLKRGKMTPQEERLVLELHAKWGNR 83          

HSP 2 Score: 55.8398 bits (133), Expect = 2.334e-32
Identity = 23/31 (74.19%), Postives = 29/31 (93.55%), Query Frame = 3
Query:  666 RWSKIAQCLPGRTDNEIKNYWRTRVQKQARQ 758
            RWSKIA+ LPGRTDNEIKNYWRT ++K+A++
Sbjct:   83 RWSKIARKLPGRTDNEIKNYWRTHMRKKAQE 113          
BLAST of DY270949 vs. ExPASy Swiss-Prot
Match: MYBA2_ORYSJ (Myb-related protein MYBAS2 OS=Oryza sativa subsp. japonica GN=MYBAS2 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.321e-29
Identity = 47/109 (43.12%), Postives = 63/109 (57.80%), Query Frame = 2
Query:  230 QQELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGN*IHA*KFFTS*CLLYMLVTKLA*LIISGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQFLILELHSKWGNR 556
            ++E+R+GPWT +ED  L   +   GE RW+ +AK                             +SGL RTGKSCRLRW+NYL P +KRG ++P E+ LILELH++WGNR
Sbjct:    5 REEIRKGPWTEQEDLQLVCTVRLFGERRWDFIAK-----------------------------VSGLNRTGKSCRLRWVNYLHPGLKRGRMSPHEERLILELHARWGNR 84          

HSP 2 Score: 54.6842 bits (130), Expect = 1.321e-29
Identity = 22/31 (70.97%), Postives = 29/31 (93.55%), Query Frame = 3
Query:  666 RWSKIAQCLPGRTDNEIKNYWRTRVQKQARQ 758
            RWS+IA+ LPGRTDNEIKNYWRT ++K+A++
Sbjct:   84 RWSRIARRLPGRTDNEIKNYWRTHMRKKAQE 114          
BLAST of DY270949 vs. ExPASy Swiss-Prot
Match: MYBA1_ORYSJ (Myb-related protein MYBAS1 OS=Oryza sativa subsp. japonica GN=MYBAS1 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 6.438e-29
Identity = 45/109 (41.28%), Postives = 63/109 (57.80%), Query Frame = 2
Query:  230 QQELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGN*IHA*KFFTS*CLLYMLVTKLA*LIISGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQFLILELHSKWGNR 556
            ++E+R+GPWT +ED  L   +   G+ RW+ VAK                             +SGL RTGKSCRLRW+NYL P +K G ++P+E+ LI+ELH++WGNR
Sbjct:    5 REEMRKGPWTEQEDLQLVCTVRLFGDRRWDFVAK-----------------------------VSGLNRTGKSCRLRWVNYLHPGLKHGRMSPKEEHLIIELHARWGNR 84          

HSP 2 Score: 54.6842 bits (130), Expect = 6.438e-29
Identity = 22/31 (70.97%), Postives = 29/31 (93.55%), Query Frame = 3
Query:  666 RWSKIAQCLPGRTDNEIKNYWRTRVQKQARQ 758
            RWS+IA+ LPGRTDNEIKNYWRT ++K+A++
Sbjct:   84 RWSRIARRLPGRTDNEIKNYWRTHMRKKAQE 114          
BLAST of DY270949 vs. ExPASy Swiss-Prot
Match: WER_ARATH (Transcription factor WER OS=Arabidopsis thaliana GN=WER PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 4.099e-28
Identity = 49/119 (41.18%), Postives = 65/119 (54.62%), Query Frame = 2
Query:  200 KRECNSSEEDQQELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGN*IHA*KFFTS*CLLYMLVTKLA*LIISGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQFLILELHSKWGNR 556
            K+  +S +E   E ++G WT+EED +L  Y+  HG+G WN +AK                              +GLKR GKSCRLRW+NYL P++KRGN T QE+ LI+ LH   GNR
Sbjct:    3 KKVSSSGDEGNNEYKKGLWTVEEDKILMDYVKAHGKGHWNRIAKK-----------------------------TGLKRCGKSCRLRWMNYLSPNVKRGNFTEQEEDLIIRLHKLLGNR 92          

HSP 2 Score: 48.1358 bits (113), Expect = 4.099e-28
Identity = 26/64 (40.62%), Postives = 37/64 (57.81%), Query Frame = 3
Query:  651 LIGNFRWSKIAQCLPGRTDNEIKNYWRTRVQKQ---------------ARQLNIESNSETFFET 797
            L+GN RWS IA+ +PGRTDN++KNYW T + K+                 Q+N+ + +ET  ET
Sbjct:   88 LLGN-RWSLIAKRVPGRTDNQVKNYWNTHLSKKLGIKDQKTKQSNGDIVYQINLPNPTETSEET 150          
BLAST of DY270949 vs. ExPASy Swiss-Prot
Match: MYB15_ANTMA (Myb-related protein 315 OS=Antirrhinum majus GN=MYB315 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 7.410e-27
Identity = 44/106 (41.51%), Postives = 57/106 (53.77%), Query Frame = 2
Query:  239 LRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGN*IHA*KFFTS*CLLYMLVTKLA*LIISGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQFLILELHSKWGNR 556
            L+RGPWT EED  LT Y+ ++G   W ++ K AG                             L R GKSCRLRW+NYL+PD+K+G LT  E+  I+ELH+  GNR
Sbjct:   12 LKRGPWTEEEDQKLTSYVLKNGIQGWRVIPKLAG-----------------------------LSRCGKSCRLRWMNYLRPDLKKGPLTEMEENQIIELHAHLGNR 88          

HSP 2 Score: 58.9214 bits (141), Expect = 7.410e-27
Identity = 27/47 (57.45%), Postives = 35/47 (74.47%), Query Frame = 3
Query:  654 IGNFRWSKIAQCLPGRTDNEIKNYWRTRVQKQARQLNIESNSETFFE 794
            +GN RWSKIA  +PGRTDNEIKNYW T ++K+ + L I+ N+   FE
Sbjct:   85 LGN-RWSKIALHIPGRTDNEIKNYWNTHIKKKLKLLGIDPNNHQPFE 130          
BLAST of DY270949 vs. ExPASy Swiss-Prot
Match: MYB21_ARATH (Transcription factor MYB21 OS=Arabidopsis thaliana GN=MYB21 PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 8.523e-27
Identity = 60/124 (48.39%), Postives = 76/124 (61.29%), Query Frame = 2
Query:  185 RAAGTKRECNSSEEDQQELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGN*IHA*KFFTS*CLLYMLVTKLA*LIISGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQFLILELHSKWGNR 556
            R  G+     SS E   E+R+GPWT+EED +L +YI  HG+G WN +AK AG                             LKRTGKSCRLRWLNYL+PD++RGN+TP+EQ +I+ELH+KWGNR
Sbjct:    4 RGGGSSGGSGSSAE--AEVRKGPWTMEEDLILINYIANHGDGVWNSLAKSAG-----------------------------LKRTGKSCRLRWLNYLRPDVRRGNITPEEQLIIMELHAKWGNR 96          
BLAST of DY270949 vs. ExPASy Swiss-Prot
Match: MYB23_ARATH (Transcription factor MYB23 OS=Arabidopsis thaliana GN=MYB23 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 3.623e-26
Identity = 45/109 (41.28%), Postives = 59/109 (54.13%), Query Frame = 2
Query:  230 QQELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGN*IHA*KFFTS*CLLYMLVTKLA*LIISGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQFLILELHSKWGNR 556
            + E ++G WT+EED +L  Y+  HG+G WN +AK                              +GLKR GKSCRLRW+NYL P++ RGN T QE+ LI+ LH   GNR
Sbjct:    9 EHEYKKGLWTVEEDKILMDYVRTHGQGHWNRIAKK-----------------------------TGLKRCGKSCRLRWMNYLSPNVNRGNFTDQEEDLIIRLHKLLGNR 88          

HSP 2 Score: 47.7506 bits (112), Expect = 3.623e-26
Identity = 20/33 (60.61%), Postives = 27/33 (81.82%), Query Frame = 3
Query:  651 LIGNFRWSKIAQCLPGRTDNEIKNYWRTRVQKQ 749
            L+GN RWS IA+ +PGRTDN++KNYW T + K+
Sbjct:   84 LLGN-RWSLIAKRVPGRTDNQVKNYWNTHLSKK 115          
The following BLAST results are available for this feature:
BLAST of DY270949 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
MYB05_ANTMA8.062e-4050.42Myb-related protein 305 OS=Antirrhinum majus GN=MY... [more]
MYB40_ANTMA1.602e-3749.58Myb-related protein 340 OS=Antirrhinum majus GN=MY... [more]
MYB59_ARATH9.816e-3447.71Transcription factor MYB59 OS=Arabidopsis thaliana... [more]
MYB48_ARATH2.334e-3246.67Transcription factor MYB48 OS=Arabidopsis thaliana... [more]
MYBA2_ORYSJ1.321e-2943.12Myb-related protein MYBAS2 OS=Oryza sativa subsp. ... [more]
MYBA1_ORYSJ6.438e-2941.28Myb-related protein MYBAS1 OS=Oryza sativa subsp. ... [more]
WER_ARATH4.099e-2841.18Transcription factor WER OS=Arabidopsis thaliana G... [more]
MYB15_ANTMA7.410e-2741.51Myb-related protein 315 OS=Antirrhinum majus GN=MY... [more]
MYB21_ARATH8.523e-2748.39Transcription factor MYB21 OS=Arabidopsis thaliana... [more]
MYB23_ARATH3.623e-2641.28Transcription factor MYB23 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YF20FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270949 ID=DY270949; Name=DY270949; organism=Citrus clementina; type=EST; length=1194bp
TCTTTTTCCGGTTTTCTGTAGTGTTTGTTTGAACTAGGTAGCTATCCTAA
ATGATTGTTTATTATTACTAGCTACCGGTTTCACATTCGCTCTCATTTTG
CCCGTTTCTACTCTCTCGCTTGCTTCTAGCCTTGACCAACAAAAACCTCG
TAGGGACACAAAAATGCACACAATGAGAGCAGCAAGGGCTGCTGGTACAA
AGAGAGAGTGCAATTCCAGTGAAGAAGATCAACAAGAGCTGAGAAGAGGG
CCATGGACTCTTGAAGAAGACACACTTCTTACTCATTACATACATCAACA
CGGCGAAGGTCGTTGGAATATGGTAGCTAAATGTGCAGGTAACTAAATAC
ATGCATAAAAGTTTTTTACATCATGATGTCTGTTATATATGTTAGTTACT
AAATTGGCCTGACTTATAATTTCAGGACTCAAAAGAACTGGAAAGAGTTG
CAGATTGAGATGGCTAAATTATTTGAAACCCGATATTAAACGCGGGAACC
TAACTCCGCAGGAGCAGTTCTTGATTCTTGAACTCCATTCTAAGTGGGGT
AACAGGTAAATTAATATCCCTATTATACAGTACAACACTAGAGTCGGAAT
TTTTTTTCTTTTCTTTTGATGAAGTTCTAATCGAATTTAATTATGCGATG
TTAATTGGCAACTTTAGGTGGTCAAAAATTGCACAATGTCTGCCTGGAAG
AACAGACAATGAAATCAAGAATTATTGGAGAACAAGGGTGCAGAAACAAG
CTCGCCAGCTTAATATTGAGTCTAACAGTGAGACATTTTTCGAAACTGTT
CGATGTTATTGGATGCCAAGAATTGCTGCAAAAAAAGGGACCAAAATTCG
GCTTCCCCTAAAACTCCTTTTGAAAAATTTCAGTGGCCAAACCATCCAAT
TTTTTCAATTATCCCTTTCGGTTTCTCCCCCAACATTTATCCCCCCCTGC
CCAGCCACAATATTTTTACAACTTCAAATCCAAACCTAAAATGAAAAACC
TCAGTTTTCAAAAACCAACCCCCCAAAATTTTTTTCCCGGGAAATATTTT
TTCAAAAATTCTTACACCGCCCGGCCCCCCCCCCGCGGAAATTTATCTCC
AAAAACGCCCCAAAACAATTCCCCCCCAGGTGGCTTTATGGGGGAACAAC
AAAGGGTTTGGGCCCAAGCCAACCCCCAAAAAAAAATTCTTCCC
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