DY270950

Overview
NameDY270950
Unique NameDY270950
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1045
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3781 contig Ccv1_Contig3781:1..1045. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY270950 vs. ExPASy Swiss-Prot
Match: PSC13_MAIZE (Pollen-specific protein C13 OS=Zea mays GN=MGS1 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 7.566e-29
Identity = 62/153 (40.52%), Postives = 96/153 (62.75%), Query Frame = -2
Query:  337 LLIALCGLPVLGSAVRPNTKPFSVEGRVYCDTCQAGFETPAPTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLISSPQNDCKTVAPGRERSRVILTSYNGISFETRYANSMGFMKAEPMSGCAEVLRLYQEED 795
            +++ LC +    +A  PN   + ++GRVYCDTC+AGF T    YIAGAKV++ECK   + ++  + +G TD+TGTY I + + H++ +C  VL++SP+ DC  V   R+R+ V+LT   GIS   R AN +G+ K  P+  CA +L+    +D
Sbjct:   14 VILCLCVVLSCAAADDPNLPDYVIQGRVYCDTCRAGFVTNVTEYIAGAKVRLECKHFGTGKLERAIDGVTDATGTYTIELKDSHEEDICQVVLVASPRKDCDEVQALRDRAGVLLTRNVGISDSLRPANPLGYFKDVPLPVCAALLKQLDSDD 166          
BLAST of DY270950 vs. ExPASy Swiss-Prot
Match: OLEE1_BETVE (Olee1-like protein OS=Betula verrucosa PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 4.904e-28
Identity = 63/147 (42.86%), Postives = 92/147 (62.59%), Query Frame = -2
Query:  355 ALCGLPVLGSAVRPNTKPFSVEGRVYCDTCQAGFETPAPTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLISSPQNDCKTVAPG---RERSRVILTSYNGISFETRYANSMGFMKAEPMSGCAEVLR 786
            ALC L +LG A   +   F VEG+VYCD C+  F T   TY+ GAKV +EC++R+   ++YS + +TD +GTY+I V  DH++++C+  L  S   DC  V+     ++ +R+ LT  NGIS   R AN +GFMK +P+  CA+ LR
Sbjct:   11 ALCFLSLLGFAYSESR--FFVEGKVYCDNCRTQFVTKLSTYMKGAKVSLECRNREGGTLIYSSDSETDKSGTYRIPVDGDHEEEICEIALKKSSDPDCSEVSKDPFLKKSARISLTKNNGISTPVRLANPLGFMKKKPLPECAKALR 155          
BLAST of DY270950 vs. ExPASy Swiss-Prot
Match: LAT52_SOLLC (Anther-specific protein LAT52 OS=Solanum lycopersicum GN=LAT52 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 5.995e-26
Identity = 61/147 (41.50%), Postives = 87/147 (59.18%), Query Frame = -2
Query:  358 LLIALCGLPVLGSA-VRPNTKPFSVEGRVYCDTCQAGFETPAPTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLISSPQNDCKTVAPGRERSRVILTSYNGISFETRYANSMGFMKAEPMSGCAEVL 795
            LL ALC L +   A  RP    F VEG+VYCDTC+  FET     + GA VK++C++  +    +S EG TD  G YK+ V+ DH++ +C+  ++ SP+ DCK    G E++R+  +   GI    R+AN + FMKAE + GC E L
Sbjct:    7 LLSALCILALANFAHCRPEV--FDVEGKVYCDTCRVQFETKLSENLEGATVKLQCRNISTEAETFSVEGVTDKDGKYKLTVNGDHENDICEVTVVKSPREDCKESVSGYEKARIECSDNVGIHNAVRFANPLFFMKAESVQGCKEAL 151          
BLAST of DY270950 vs. ExPASy Swiss-Prot
Match: PHLB_PHLPR (Pollen allergen Phl p 11 OS=Phleum pratense PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.477e-24
Identity = 56/133 (42.11%), Postives = 76/133 (57.14%), Query Frame = -2
Query:  337 FSVEGRVYCDTCQAGFETPAPTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLISSPQNDCKTVAPGRERSRVILTSYNGISFE-TRYANSMGFMKAEPMSGCAEVLRLYQEED 732
            F V GRVYCD C+AGFET     + GA V V+C+     +     E  TD  G YKI + +DHQ+++C+ VL  SP   C  +   R+R+RV LTS NGI  +  RYAN + F + EP+  C  +L+ Y   D
Sbjct:    6 FVVTGRVYCDPCRAGFETNVSHNVQGATVAVDCRPFNGGESKLKAEATTDGLGWYKIEIDQDHQEEICEVVLAKSPDTTCSEIEEFRDRARVPLTSNNGIKQQGIRYANPIAFFRKEPLKECGGILQAYDLRD 138          
BLAST of DY270950 vs. ExPASy Swiss-Prot
Match: LOLB_LOLPR (Major pollen allergen Lol p 11 OS=Lolium perenne PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 2.132e-23
Identity = 54/129 (41.86%), Postives = 74/129 (57.36%), Query Frame = -2
Query:  349 FSVEGRVYCDTCQAGFETPAPTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLISSPQNDCKTVAPGRERSRVILTSYNGISFE-TRYANSMGFMKAEPMSGCAEVLRLY 732
            F V GRVYCD C+AGFET     + GA V V+C+     +     E  TD  G YKI + +DHQ+++C+ VL  SP   C  +   R+R+RV LTS  GI  +  RYAN + F + EP+  C  +L+ Y
Sbjct:    6 FVVTGRVYCDPCRAGFETNVSHNVEGATVAVDCRPFDGGESKLKAEATTDKDGWYKIEIDQDHQEEICEVVLAKSPDKSCSEIEEFRDRARVPLTSNXGIKQQGIRYANPIAFFRKEPLKECGGILQAY 134          
BLAST of DY270950 vs. ExPASy Swiss-Prot
Match: CHE1_CHEAL (Pollen allergen Che a 1 OS=Chenopodium album PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 2.132e-23
Identity = 62/159 (38.99%), Postives = 91/159 (57.23%), Query Frame = -2
Query:  334 FLLI-ALCGLPVLGSAVRPNTKPFSVEGRVYCDTCQAGFETPAPTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLISSPQNDCKTVAP---GRERSRVILTSYNGISFETRYANSMGFMKAEPMSGCAEVLRLYQEEDV 798
            FLL+ ALC L + G A       F V+G VYCDTC+  F T   T + GA VK+EC++  +    +  E  TD  G Y I V+ D +D +C+  L+ SP ++C  V+     ++ ++V LTS NG + + R AN++GFM+ EP+  C EVL+     DV
Sbjct:    8 FLLVGALCVLSLAGVANAAENH-FKVQGMVYCDTCRIQFMTRISTIMEGATVKLECRNITAGTQTFKAEAVTDKVGQYSIPVNGDFEDDICEIELVKSPNSECSEVSHDVYAKQSAKVSLTSNNGEASDIRSANALGFMRKEPLKECPEVLKELDLYDV 165          
BLAST of DY270950 vs. ExPASy Swiss-Prot
Match: ALL1_OLEEU (Major pollen allergen OS=Olea europaea PE=1 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 4.446e-21
Identity = 46/130 (35.38%), Postives = 75/130 (57.69%), Query Frame = -2
Query:  361 RPNTKPFSVEGRVYCDTCQAGFETPAPTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLISSPQNDCKTVAPGRERSRVILTSYNGISFETRYANSMGFMKAEPMSGCAEV 750
            +P    F ++G+VYCDTC+AGF T    +I GA ++++CKD+++  V ++  G T + G Y +LV  DH+++ C+  LISS + DC  +         +    N ++  TR  N +GF K E +  CA+V
Sbjct:    5 QPPVSQFHIQGQVYCDTCRAGFITELSEFIPGASLRLQCKDKENGDVTFTEVGYTRAEGLYSMLVERDHKNEFCEITLISSGRKDCNEIPTEGWAKPSLKFKLNTVNGTTRTVNPLGFFKKEALPKCAQV 134          
BLAST of DY270950 vs. ExPASy Swiss-Prot
Match: LIGV1_LIGVU (Major pollen allergen Lig v 1 OS=Ligustrum vulgare PE=1 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 5.435e-19
Identity = 46/133 (34.59%), Postives = 77/133 (57.89%), Query Frame = -2
Query:  361 RPNTKPFSVEGRVYCDTCQAGFETPAPTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLISSPQNDCKTVAPG---RERSRVILTSYNGISFETRYANSMGFMKAEPMSGCAEV 750
            +P    F ++G+VYCDTC+A F T    +I GA V+++CKD ++ +V ++  G T + G Y +L+  DH+++ C+  LISS + DC  +      +   + +L + NG    TR  N +GF+K E +  C +V
Sbjct:    5 QPPVSQFYIQGQVYCDTCRARFITELSEFIPGAGVRLQCKDGENGKVTFTEVGYTKAEGLYNMLIERDHKNEFCEITLISSSRKDCDEIPTEGWVKPSLKFVLNTVNG---TTRTINPLGFLKKEVLPKCPQV 134          
The following BLAST results are available for this feature:
BLAST of DY270950 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
PSC13_MAIZE7.566e-2940.52Pollen-specific protein C13 OS=Zea mays GN=MGS1 PE... [more]
OLEE1_BETVE4.904e-2842.86Olee1-like protein OS=Betula verrucosa PE=2 SV=1[more]
LAT52_SOLLC5.995e-2641.50Anther-specific protein LAT52 OS=Solanum lycopersi... [more]
PHLB_PHLPR1.477e-2442.11Pollen allergen Phl p 11 OS=Phleum pratense PE=1 S... [more]
LOLB_LOLPR2.132e-2341.86Major pollen allergen Lol p 11 OS=Lolium perenne P... [more]
CHE1_CHEAL2.132e-2338.99Pollen allergen Che a 1 OS=Chenopodium album PE=1 ... [more]
ALL1_OLEEU4.446e-2135.38Major pollen allergen OS=Olea europaea PE=1 SV=2[more]
LIGV1_LIGVU5.435e-1934.59Major pollen allergen Lig v 1 OS=Ligustrum vulgare... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP8YF21FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY270950 ID=DY270950; Name=DY270950; organism=Citrus clementina; type=EST; length=1045bp
CAATTCCAGAGTTTTCAGCTAATGTTTTAGAACTCATAAAATTACAAGAG
GAAAAGTAGCGGACTAGCTGAAGTCCATAGCTTCAAAGGCTGGAACAGAT
TTATTGCAAAAATAAATCAGGCATTACTAGCGATAAAACACATCTCAAAG
CTAGAAGCACCAGCATATAAATAAATTAATAGCGTACGCGTCCTTTAACA
ACAAATTAAGAATTCTCTAAACATAGAAACAACACAGCCATCCGGGCACT
ACTAATAGAAGAGACAGTATAAGGCAACACAAAGCTTAAACAAATGGAAA
GCGATAGAAAAAACCATGCCACACCATTCTCTACACATCCTCCTCCTGAT
ATAGCCTGAGAACCTCAGCACAGCCAGACATGGGCTCTGCCTTCATGAAG
CCCATTGAATTGGCATATCGGGTTTCAAAAGAAATGCCGTTGTAACTGGT
CAAGATCACACGGGAACGCTCACGCCCTGGGGCAACTGTTTTGCAGTCAT
TCTGGGGGCTACTAATGAGGACAGCATCGCAAAGTTGATCCTGATGGTCT
TCTGAAACGAGGATCTTATATGTTCCAGTTGAGTCTGTTTTCCCTTCCCT
GCTATATACTACTTGCATTGACTTCCTGTCTTTGCATTCAACCTTAACCT
TGGCACCGGCGATGTAGGTGGGAGCGGGGGTCTCAAAGCCGGCTTGGCAG
GTGTCGCAGTAAACGCGTCCTTCAACCGAGAACGGTTTAGTGTTGGGCCG
GACCGCGCTCCCCAAAACCGGCAGCCCGCAAAGAGCGATCAACAAAAAGG
GTCCAACCCATTGTCTTAGGGGAAATAAAGGGAGCCTGAAAAAAATTGAA
ATTGGAAAACAAAGGGAGTGAATTCTAAACAAAACGGGACCCCCCCCCGG
GGGGGAGGATTAAGGGGGGTTCCAAATTACAAAAAGGGGAAAAAAAAAAA
AAAAAACCCAACTTTTTTGGTAAAAAGTTGGGGATTAAAAAAAAAAAAAT
TCTTTAAATATTTGTGTGGCAAAACAAACGGGCCCCAAATCCGAT
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