DY271138

Overview
NameDY271138
Unique NameDY271138
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1181
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14464 contig Ccv1_Contig14464:115..1295. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY271138 vs. ExPASy Swiss-Prot
Match: GRP8_ARATH (Glycine-rich RNA-binding protein 8 OS=Arabidopsis thaliana GN=GRP8 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.344e-16
Identity = 39/80 (48.75%), Postives = 57/80 (71.25%), Query Frame = 3
Query:    6 FVGWLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGG 245
            FVG L+W   +  L+  F +FG +I+ +I+ +R+SGR RGFGF+T+ D +AM DAI EM+G+E   RVI+VN+AQ +  G
Sbjct:    9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNEAQSRGSG 88          
BLAST of DY271138 vs. ExPASy Swiss-Prot
Match: GRP10_BRANA (Glycine-rich RNA-binding protein 10 OS=Brassica napus GN=GRP10 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.756e-16
Identity = 38/80 (47.50%), Postives = 59/80 (73.75%), Query Frame = 3
Query:    6 FVGWLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGG 245
            FVG L+W   + +LE  F +FG++I+ +I+ +R++GR RGFGF+T+ D ++M DAI EM+G+E   R I+VN+AQ + GG
Sbjct:    9 FVGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAIDEMNGKELDGRTITVNEAQSRGGG 88          
BLAST of DY271138 vs. ExPASy Swiss-Prot
Match: GRP2_SINAL (Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.138e-15
Identity = 37/80 (46.25%), Postives = 58/80 (72.50%), Query Frame = 3
Query:    6 FVGWLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGG 245
            FVG L+W   ER LE AF +FG++++ +I+ +R++GR RGFGF+T+ D ++M DAI  M+G++   R I+VN+AQ +  G
Sbjct:   11 FVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDLDGRSITVNEAQSRGSG 90          
BLAST of DY271138 vs. ExPASy Swiss-Prot
Match: GRP7_ARATH (Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana GN=GRP7 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 3.311e-15
Identity = 38/85 (44.71%), Postives = 58/85 (68.24%), Query Frame = 3
Query:    6 FVGWLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGGEVSDH 260
            FVG L+W   +R LE AF ++G +I+ +I+ +R++GR RGFGF+T+ D +AM DAI  M+G++   R I+VN+AQ +  G    H
Sbjct:   11 FVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVNEAQSRGSGGGGGH 95          
BLAST of DY271138 vs. ExPASy Swiss-Prot
Match: GRPA_MAIZE (Glycine-rich RNA-binding, abscisic acid-inducible protein OS=Zea mays GN=RAB15 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 4.324e-15
Identity = 36/80 (45.00%), Postives = 57/80 (71.25%), Query Frame = 3
Query:    6 FVGWLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGG 245
            FVG L+W  +   LENAF  +G+I++ +++ +R++GR RGFGF+T++   +M DAI  M+G+E   R I+VN+AQ + GG
Sbjct:   11 FVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIENMNGKELDGRNITVNQAQSRGGG 90          
BLAST of DY271138 vs. ExPASy Swiss-Prot
Match: GRP2_SORBI (Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor GN=GRP2 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 7.376e-15
Identity = 36/80 (45.00%), Postives = 56/80 (70.00%), Query Frame = 3
Query:    6 FVGWLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGG 245
            FVG L+W      LE AF  FG++I+ +++ +R++GR RGFGF+T++  ++M DAI  M+G+E   R I+VN+AQ + GG
Sbjct:   11 FVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAIENMNGKELDGRNITVNQAQSRGGG 90          
BLAST of DY271138 vs. ExPASy Swiss-Prot
Match: GRP1_SINAL (Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 7.376e-15
Identity = 35/80 (43.75%), Postives = 58/80 (72.50%), Query Frame = 3
Query:    6 FVGWLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGG 245
            FVG L+W   +R LE AF ++G++++ +I+ +R++GR RGFGF+T+ D ++M DAI  M+G++   R I+VN+AQ +  G
Sbjct:   11 FVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDLDGRSITVNEAQSRGSG 90          
BLAST of DY271138 vs. ExPASy Swiss-Prot
Match: GRP1_DAUCA (Glycine-rich RNA-binding protein OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.643e-14
Identity = 37/80 (46.25%), Postives = 55/80 (68.75%), Query Frame = 3
Query:    6 FVGWLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGG 245
            FVG L+W   +  LE AF +FG I + +I+ +R++GR RGFGF+T+ D ++M DAI  M+G+E   R I+VN+AQ +  G
Sbjct:    9 FVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIEGMNGQELDGRNITVNEAQSRGSG 88          
BLAST of DY271138 vs. ExPASy Swiss-Prot
Match: GRP_HORVU (Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare GN=blt801 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.391e-13
Identity = 34/77 (44.16%), Postives = 54/77 (70.13%), Query Frame = 3
Query:    6 FVGWLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPK 236
            FVG L W   ++ L+NAF ++G +I+ +I+ +R++GR RGFGF+T+A   AM  AI  M+G++   R I+VN+AQ +
Sbjct:    9 FVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIEAMNGQDLDGRNITVNEAQSR 85          
BLAST of DY271138 vs. ExPASy Swiss-Prot
Match: GRP2_ARATH (Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis thaliana GN=GRP2 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 5.845e-12
Identity = 31/78 (39.74%), Postives = 49/78 (62.82%), Query Frame = 3
Query:    3 IFVGWLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPK 236
            +F+G LSW   +  L +AF  FG +++ +++++R++GR RGFGF+ + D  A   AI EM G+E   R I VN A  +
Sbjct:   37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPANDR 114          
The following BLAST results are available for this feature:
BLAST of DY271138 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
GRP8_ARATH1.344e-1648.75Glycine-rich RNA-binding protein 8 OS=Arabidopsis ... [more]
GRP10_BRANA1.756e-1647.50Glycine-rich RNA-binding protein 10 OS=Brassica na... [more]
GRP2_SINAL1.138e-1546.25Glycine-rich RNA-binding protein GRP2A OS=Sinapis ... [more]
GRP7_ARATH3.311e-1544.71Glycine-rich RNA-binding protein 7 OS=Arabidopsis ... [more]
GRPA_MAIZE4.324e-1545.00Glycine-rich RNA-binding, abscisic acid-inducible ... [more]
GRP2_SORBI7.376e-1545.00Glycine-rich RNA-binding protein 2 OS=Sorghum bico... [more]
GRP1_SINAL7.376e-1543.75Glycine-rich RNA-binding protein GRP1A OS=Sinapis ... [more]
GRP1_DAUCA1.643e-1446.25Glycine-rich RNA-binding protein OS=Daucus carota ... [more]
GRP_HORVU1.391e-1344.16Glycine-rich RNA-binding protein blt801 OS=Hordeum... [more]
GRP2_ARATH5.845e-1239.74Glycine-rich RNA-binding protein 2, mitochondrial ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YP09FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271138 ID=DY271138; Name=DY271138; organism=Citrus clementina; type=EST; length=1181bp
GGATATTTGTCGGATGGCTGTCCTGGAACGTCACTGAGCGACAGCTCGAA
AACGCGTTTGATCGTTTTGGAAAAATAATCGAGTGCCAGATCATGTTGGA
AAGAGATTCAGGCCGTCCACGTGGGTTCGGATTTATTACATATGCAGACC
GTCGGGCGATGGATGATGCTATCAGAGAAATGCATGGGCGCGAGTTTGGT
GATAGGGTCATCTCTGTGAATAAGGCCCAGCCAAAAATGGGAGGTGAGGT
TTCAGATCATGGCTACAGGGGAGGAGGCTACTCATCTGGTGGCAGGGGAA
GCTATGGTGCTGACAGGCCTGGAGGGCAAGATGACTGCTTCAAGTGTGGT
CGCCCTGGACATTGGGCCCGAGATTGTCCTTCAGCTGTAGGTGGCCGAGG
TGGGGCTGGAGGTTCATTTTCATCACGCTCCAGATTTGGAGGGGTTGGTG
TCCGTGGTGACTACCTTGGAGGAGGTCGTGACCGATACATTGATGATCGC
TATGATGGAGGACGCTATGGAGATAGGGATCGCTATGACAGCAAGGATAG
CAAATATGGGAGCCGCGATCGCTATGTTAGTGACAGGTACCCGCCTGCTG
GAGATCGCCTTGCAGGTGATAGGTATGGTGGTTCAGATCGTTACCCTGTG
AATGGTTATGGCAAAGAGAGGGGCTATGAGAGAAATGTTGGTCCTCGGGC
AGGCAGTGATAGGTATGCAAGTGGAAGACCGGCACGGGATGATGGAAGAA
GATATAGGAACAGAGCTGCTCCTTACGAACGCCCCACCAAGGGGGAACTT
CCTTCCTTTGAACGTTACTGAATTTAAAATTATTTTCCGGTAAAAGTTTT
TAAGGTATGAACCACTAGCTAAGCGACTGGTTTTTTGAATCCCCGTTTTG
TAAGAAGAATGCATAAACAATGGATTTTAAAAAAATCCAATTTTGATTTT
AAAAAAAAAAAAAAAAAAAAAACCCCATCTTTCTTTGTTCCGCGGGTTGG
GCTTTATAAAAAAAAACCTTGGTTTCTTTTATTTTTGTTGGCCACGGAAA
AGGGGTCCCTTTTTGTATGTCAAATATTTAAAATAATTTTTTTTTTGGCG
TCCCCAATCTAATTTACTCCCCCTCCAAATGTTTTGGTAATGATATTTTA
TTTATAATGTATAAAGACCTTTTGTTTTCCT
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