DY271152

Overview
NameDY271152
Unique NameDY271152
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1005
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271152 vs. ExPASy Swiss-Prot
Match: ARF1_SALBA (ADP-ribosylation factor 1 OS=Salix bakko GN=ARF1 PE=2 SV=3)

HSP 1 Score: 113.62 bits (283), Expect = 1.827e-24
Identity = 75/151 (49.67%), Postives = 96/151 (63.58%), Query Frame = 2
Query:   74 AAGNTSTLDYRVRL-DIVTAVPTFDFCMQTVEYQNINCPVGDVGGKELIRPLGTH*ILFTHWLIFVVVNVDRDRVGESLHERHRMLHDDELRDAGLLVFAD*QS-SSRCRAAPLRPLISLVLPLFFNATGTYFSCCATSGEGHY*VLEWVS 520
            AAG T+ L Y+++L +IVT +PT  F ++TVEY+NI+  V DVGG++ IRPL  H    T  LIFVV + DRDRVGE+  E HRML++DELRDA LLVFA+ Q   +   AA +     L L           S CATSGEG Y  L+W+S
Sbjct:   27 AAGKTTIL-YKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVGEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITD--KLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLS 174          
BLAST of DY271152 vs. ExPASy Swiss-Prot
Match: ARF_VIGUN (ADP-ribosylation factor OS=Vigna unguiculata GN=ARF PE=2 SV=3)

HSP 1 Score: 111.309 bits (277), Expect = 9.069e-24
Identity = 75/151 (49.67%), Postives = 95/151 (62.91%), Query Frame = 2
Query:   74 AAGNTSTLDYRVRL-DIVTAVPTFDFCMQTVEYQNINCPVGDVGGKELIRPLGTH*ILFTHWLIFVVVNVDRDRVGESLHERHRMLHDDELRDAGLLVFAD*QS-SSRCRAAPLRPLISLVLPLFFNATGTYFSCCATSGEGHY*VLEWVS 520
            AAG T+ L Y+++L +IVT +PT  F ++TVEY+NI+  V DVGG++ IRPL  H    T  LIFVV + DRDRV E+  E HRML++DELRDA LLVFA+ Q   +   AA +     L L           S CATSGEG Y  LEW+S
Sbjct:   27 AAGKTTIL-YKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITD--KLGLHSLRQRHWYIQSTCATSGEGLYEGLEWLS 174          
BLAST of DY271152 vs. ExPASy Swiss-Prot
Match: ARF1_DAUCA (ADP-ribosylation factor 1 OS=Daucus carota GN=ARF1 PE=2 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 1.547e-23
Identity = 73/150 (48.67%), Postives = 93/150 (62.00%), Query Frame = 2
Query:   74 AAGNTSTLDYRVRL-DIVTAVPTFDFCMQTVEYQNINCPVGDVGGKELIRPLGTH*ILFTHWLIFVVVNVDRDRVGESLHERHRMLHDDELRDAGLLVFAD*QSSSRCRAAPLRPLISLVLPLFFNATGTYFSCCATSGEGHY*VLEWVS 520
            AAG T+ L Y+++L +IVT +PT  F ++TVEY+NI+  V DVGG++ IRPL  H    T  LIFVV + DRDRV E+  E HRML++DELRDA LLVFA+ Q       A    +  L L           S CATSGEG Y  L+W+S
Sbjct:   27 AAGKTTIL-YKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA-AEIIDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLS 174          
BLAST of DY271152 vs. ExPASy Swiss-Prot
Match: ARF2_ARATH (ADP-ribosylation factor 2 OS=Arabidopsis thaliana GN=ARF2-A PE=2 SV=3)

HSP 1 Score: 110.153 bits (274), Expect = 2.020e-23
Identity = 74/151 (49.01%), Postives = 95/151 (62.91%), Query Frame = 2
Query:   74 AAGNTSTLDYRVRL-DIVTAVPTFDFCMQTVEYQNINCPVGDVGGKELIRPLGTH*ILFTHWLIFVVVNVDRDRVGESLHERHRMLHDDELRDAGLLVFAD*QS-SSRCRAAPLRPLISLVLPLFFNATGTYFSCCATSGEGHY*VLEWVS 520
            AAG T+ L Y+++L +IVT +PT  F ++TVEY+NI+  V DVGG++ IRPL  H    T  LIFVV + DRDRV E+  E HRML++DELRDA LLVFA+ Q   +   AA +     L L           S CATSGEG Y  L+W+S
Sbjct:   27 AAGKTTIL-YKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITD--KLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLS 174          
BLAST of DY271152 vs. ExPASy Swiss-Prot
Match: ARF1_ARATH (ADP-ribosylation factor 1 OS=Arabidopsis thaliana GN=ARF1 PE=1 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 2.020e-23
Identity = 74/151 (49.01%), Postives = 95/151 (62.91%), Query Frame = 2
Query:   74 AAGNTSTLDYRVRL-DIVTAVPTFDFCMQTVEYQNINCPVGDVGGKELIRPLGTH*ILFTHWLIFVVVNVDRDRVGESLHERHRMLHDDELRDAGLLVFAD*QS-SSRCRAAPLRPLISLVLPLFFNATGTYFSCCATSGEGHY*VLEWVS 520
            AAG T+ L Y+++L +IVT +PT  F ++TVEY+NI+  V DVGG++ IRPL  H    T  LIFVV + DRDRV E+  E HRML++DELRDA LLVFA+ Q   +   AA +     L L           S CATSGEG Y  L+W+S
Sbjct:   27 AAGKTTIL-YKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITD--KLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLS 174          
BLAST of DY271152 vs. ExPASy Swiss-Prot
Match: ARF2_ORYSJ (ADP-ribosylation factor 2 OS=Oryza sativa subsp. japonica GN=ARF PE=2 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 3.446e-23
Identity = 74/156 (47.44%), Postives = 96/156 (61.54%), Query Frame = 2
Query:   74 AAGNTSTLDYRVRL-DIVTAVPTFDFCMQTVEYQNINCPVGDVGGKELIRPLGTH*ILFTHWLIFVVVNVDRDRVGESLHERHRMLHDDELRDAGLLVFAD*QS-SSRCRAAPLRPLISLVLPLFFNATGTYFSCCATSGEGHY*VLEWVSQCTTN 535
            AAG T+ L Y+++L +IVT +PT  F ++TVEY+NI+  V DVGG++ IRPL  H    T  LIFVV + DR+RV E+  E HRML++DELRDA LLVFA+ Q   +   AA +     L L           S CATSGEG Y  L+W+S    N
Sbjct:   27 AAGKTTIL-YKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITD--KLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAN 179          
BLAST of DY271152 vs. ExPASy Swiss-Prot
Match: ARF1_CHLRE (ADP-ribosylation factor 1 OS=Chlamydomonas reinhardtii GN=ARF1 PE=2 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 3.446e-23
Identity = 74/156 (47.44%), Postives = 96/156 (61.54%), Query Frame = 2
Query:   74 AAGNTSTLDYRVRL-DIVTAVPTFDFCMQTVEYQNINCPVGDVGGKELIRPLGTH*ILFTHWLIFVVVNVDRDRVGESLHERHRMLHDDELRDAGLLVFAD*QS-SSRCRAAPLRPLISLVLPLFFNATGTYFSCCATSGEGHY*VLEWVSQCTTN 535
            AAG T+ L Y+++L +IVT +PT  F ++TVEY+NI+  V DVGG++ IRPL  H    T  LIFVV + DR+RV E+  E HRML++DELRDA LLVFA+ Q   +   AA +     L L           S CATSGEG Y  L+W+S    N
Sbjct:   27 AAGKTTIL-YKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITD--KLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNLAN 179          
BLAST of DY271152 vs. ExPASy Swiss-Prot
Match: ARF_MAIZE (ADP-ribosylation factor OS=Zea mays GN=ARF1 PE=2 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 4.501e-23
Identity = 73/151 (48.34%), Postives = 95/151 (62.91%), Query Frame = 2
Query:   74 AAGNTSTLDYRVRL-DIVTAVPTFDFCMQTVEYQNINCPVGDVGGKELIRPLGTH*ILFTHWLIFVVVNVDRDRVGESLHERHRMLHDDELRDAGLLVFAD*QS-SSRCRAAPLRPLISLVLPLFFNATGTYFSCCATSGEGHY*VLEWVS 520
            AAG T+ L Y+++L +IVT +PT  F ++TVEY+NI+  V DVGG++ IRPL  H    T  LIFVV + DRDRV E+  E HRML++DELRDA LLVFA+ Q   +   AA +     L L           S CAT+GEG Y  L+W+S
Sbjct:   27 AAGKTTIL-YKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITD--KLGLNSLRQRHWYIQSTCATTGEGLYEGLDWLS 174          
BLAST of DY271152 vs. ExPASy Swiss-Prot
Match: ARF12_CAEEL (ADP-ribosylation factor 1-like 2 OS=Caenorhabditis elegans GN=arf-1.2 PE=1 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 4.501e-23
Identity = 72/155 (46.45%), Postives = 95/155 (61.29%), Query Frame = 2
Query:   74 AAGNTSTLDYRVRL-DIVTAVPTFDFCMQTVEYQNINCPVGDVGGKELIRPLGTH*ILFTHWLIFVVVNVDRDRVGESLHERHRMLHDDELRDAGLLVFAD*QSSSRCRAAPLRPLISLVLPLFFNATGTYFSCCATSGEGHY*VLEWVSQCTTN 535
            AAG T+ L Y+++L +IVT +PT  F ++TVEY+NI+  V DVGG++ IRPL  H    T  LIFVV + DR+RVGE+  E  RML +DELRDA LLVFA+ Q   +   A       L L    N +    + CATSG+G Y  L+W+S    N
Sbjct:   27 AAGKTTIL-YKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVGEAREELMRMLAEDELRDAVLLVFANKQDLPQAMNA-AEVTDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSNQLKN 179          
BLAST of DY271152 vs. ExPASy Swiss-Prot
Match: ARF12_CAEBR (ADP-ribosylation factor 1-like 2 OS=Caenorhabditis briggsae GN=arf-1.2 PE=3 SV=3)

HSP 1 Score: 108.997 bits (271), Expect = 4.501e-23
Identity = 72/155 (46.45%), Postives = 95/155 (61.29%), Query Frame = 2
Query:   74 AAGNTSTLDYRVRL-DIVTAVPTFDFCMQTVEYQNINCPVGDVGGKELIRPLGTH*ILFTHWLIFVVVNVDRDRVGESLHERHRMLHDDELRDAGLLVFAD*QSSSRCRAAPLRPLISLVLPLFFNATGTYFSCCATSGEGHY*VLEWVSQCTTN 535
            AAG T+ L Y+++L +IVT +PT  F ++TVEY+NI+  V DVGG++ IRPL  H    T  LIFVV + DR+RVGE+  E  RML +DELRDA LLVFA+ Q   +   A       L L    N +    + CATSG+G Y  L+W+S    N
Sbjct:   27 AAGKTTIL-YKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVGEAREELMRMLAEDELRDAVLLVFANKQDLPQAMNA-AEVTDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSNQLKN 179          
The following BLAST results are available for this feature:
BLAST of DY271152 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
ARF1_SALBA1.827e-2449.67ADP-ribosylation factor 1 OS=Salix bakko GN=ARF1 P... [more]
ARF_VIGUN9.069e-2449.67ADP-ribosylation factor OS=Vigna unguiculata GN=AR... [more]
ARF1_DAUCA1.547e-2348.67ADP-ribosylation factor 1 OS=Daucus carota GN=ARF1... [more]
ARF2_ARATH2.020e-2349.01ADP-ribosylation factor 2 OS=Arabidopsis thaliana ... [more]
ARF1_ARATH2.020e-2349.01ADP-ribosylation factor 1 OS=Arabidopsis thaliana ... [more]
ARF2_ORYSJ3.446e-2347.44ADP-ribosylation factor 2 OS=Oryza sativa subsp. j... [more]
ARF1_CHLRE3.446e-2347.44ADP-ribosylation factor 1 OS=Chlamydomonas reinhar... [more]
ARF_MAIZE4.501e-2348.34ADP-ribosylation factor OS=Zea mays GN=ARF1 PE=2 S... [more]
ARF12_CAEEL4.501e-2346.45ADP-ribosylation factor 1-like 2 OS=Caenorhabditis... [more]
ARF12_CAEBR4.501e-2346.45ADP-ribosylation factor 1-like 2 OS=Caenorhabditis... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP9YA06FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271152 ID=DY271152; Name=DY271152; organism=Citrus clementina; type=EST; length=1005bp
CTGTCATTTTCTAGTCTTTGTAGCCTGCTTTTTGCGCAGAAACAGATGCA
ACTTGTGATGGTGTGTCTCTCACGCTGCAGGTAATACCTCCACTTTGGAC
TATCGCGTGCGGCTGGACATTGTGACTGCCGTTCCGACCTTTGATTTCTG
CATGCAGACTGTGGAATATCAGAACATTAACTGCCCTGTTGGGGATGTGG
GGGGTAAGGAGCTGATTCGACCCTTGGGCACACATTAGATCCTGTTCACT
CACTGGCTGATCTTTGTGGTAGTAAACGTTGATCGTGACCGTGTGGGTGA
ATCATTGCATGAACGGCACCGGATGCTGCATGATGATGAGTTGAGGGATG
CTGGGCTGCTTGTTTTTGCCGACTGACAATCATCTTCCAGATGCCGTGCT
GCGCCGCTTAGACCACTGATAAGCTTGGTCCTCCCTCTCTTCTTCAACGC
CACTGGTACATACTTTAGCTGCTGTGCTACATCTGGGGAAGGACACTATT
AGGTGCTGGAATGGGTCTCGCAATGCACCACTAACTGAGATTAATTGAGT
GCGTAAGTCTGGGCGACCCTTTATCCGCATCGGTTATGTTGAAGGCGTGA
ATGAGTCTTTGTTTTTTTAGTAGGAAATACATTTTGCCCCTTATTCCTAA
CCTCCATAGAACTGATATAATTCCGTTTTTAACTCGTTTTGGCCCACAAC
CAGACATATTCCGCCAAATAAACTGTTATTTGACTACCCCCTATACCCCC
TATTTCATACCTCTTTTGACGTTGTCTCTCCTTTTCTCTACACACACAGA
AAACTACCTTACCGTTCAACCCTCCCCACCCTCCAACCTCATCTCACCCT
CTATACACACCTTACTCCACCACCACTCGCACCGGGGCTTTACGCGCCTC
CTAATCCCCCCCTCCTGCCCTCCCCTCTGCTTACACCCACCACAACTCGC
ACAAAACCCCTCCGCGCCTCCAATCCGCCCCACCTCCCCCCCTCTACCCC
CCCCC
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