DY271187

Overview
NameDY271187
Unique NameDY271187
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length769
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3853 contig Ccv1_Contig3853:1..769. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY271187 vs. ExPASy Swiss-Prot
Match: SPT42_ARATH (Transcription elongation factor SPT4 homolog 2 OS=Arabidopsis thaliana GN=At5g63670 PE=2 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 1.851e-57
Identity = 99/115 (86.09%), Postives = 111/115 (96.52%), Query Frame = 2
Query:  215 MGSAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVDCTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDERVQYVPPKR 559
            MGSAPAQIPTSFGHELRACLRCRLVKTYDQFR++GCENCPFFKM+EDHER+V+ TTPNFNGIISVMDP+RSWAARWLRIG+F PGCYTLAVSE LPE++Q+LC++ERVQYV PKR
Sbjct:    1 MGSAPAQIPTSFGHELRACLRCRLVKTYDQFRDAGCENCPFFKMEEDHERIVEVTTPNFNGIISVMDPSRSWAARWLRIGKFAPGCYTLAVSEPLPEEMQHLCQEERVQYVLPKR 115          
BLAST of DY271187 vs. ExPASy Swiss-Prot
Match: SPT41_ARATH (Transcription elongation factor SPT4 homolog 1 OS=Arabidopsis thaliana GN=At5g08565 PE=3 SV=3)

HSP 1 Score: 219.55 bits (558), Expect = 1.567e-56
Identity = 97/115 (84.35%), Postives = 108/115 (93.91%), Query Frame = 2
Query:  215 MGSAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVDCTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDERVQYVPPKR 559
            MG APAQIPTSFGHELRACLRCRLVKTYDQFR+SGCENCPFFK+++DHER+VD TTPNFNGIIS+MDP RSWAARWLRIG+F PGCYTLAVSEALPE++Q +C+  RVQYVPPKR
Sbjct:    1 MGEAPAQIPTSFGHELRACLRCRLVKTYDQFRDSGCENCPFFKIEDDHERIVDVTTPNFNGIISMMDPRRSWAARWLRIGKFAPGCYTLAVSEALPEEMQFICQQARVQYVPPKR 115          
BLAST of DY271187 vs. ExPASy Swiss-Prot
Match: SPT4_NEUCR (Transcription elongation factor spt-4 OS=Neurospora crassa GN=spt-4 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 7.603e-19
Identity = 40/98 (40.82%), Postives = 62/98 (63.27%), Query Frame = 2
Query:  260 LRACLRCRLVKTYDQFRESGCENCP-FFKMDEDHERVVDCTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDERVQYVP 550
            LRAC+ C +V TY +FR+ GC NC  F  +    +++  CT+  F GII++ +P +SW A+W R+  +V G Y   VS  LP+D++   ED+ +QY+P
Sbjct:   14 LRACMVCSIVMTYARFRDEGCPNCEDFLHLQGSPDQIDSCTSQVFEGIITIANPQKSWVAKWQRLDGYVKGVYATKVSGQLPDDVRTTLEDDGIQYIP 111          
BLAST of DY271187 vs. ExPASy Swiss-Prot
Match: SPT4H_MACFA (Transcription elongation factor SPT4 OS=Macaca fascicularis GN=SUPT4H1 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 9.930e-19
Identity = 44/104 (42.31%), Postives = 63/104 (60.58%), Query Frame = 2
Query:  236 IPTSFGHELRACLRCRLVKTYDQFRESGCENCP-FFKMDEDHERVVDCTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDERVQY 544
            +P    H LRACL C LVKT DQF   GC+NC  + +M  + E V DCT+ +F+GII++M P  SW ++W R+  F PG Y ++V+  LP+ +    +   V Y
Sbjct:    6 VPKDLRH-LRACLLCSLVKTIDQFEYDGCDNCDAYLQMKGNREMVYDCTSSSFDGIIAMMSPEDSWVSKWQRVSNFKPGVYAVSVTGRLPQGIVRELKSRGVAY 108          
BLAST of DY271187 vs. ExPASy Swiss-Prot
Match: SPT4H_HUMAN (Transcription elongation factor SPT4 OS=Homo sapiens GN=SUPT4H1 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 9.930e-19
Identity = 44/104 (42.31%), Postives = 63/104 (60.58%), Query Frame = 2
Query:  236 IPTSFGHELRACLRCRLVKTYDQFRESGCENCP-FFKMDEDHERVVDCTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDERVQY 544
            +P    H LRACL C LVKT DQF   GC+NC  + +M  + E V DCT+ +F+GII++M P  SW ++W R+  F PG Y ++V+  LP+ +    +   V Y
Sbjct:    6 VPKDLRH-LRACLLCSLVKTIDQFEYDGCDNCDAYLQMKGNREMVYDCTSSSFDGIIAMMSPEDSWVSKWQRVSNFKPGVYAVSVTGRLPQGIVRELKSRGVAY 108          
BLAST of DY271187 vs. ExPASy Swiss-Prot
Match: SPT4H_BOVIN (Transcription elongation factor SPT4 OS=Bos taurus GN=SUPT4H1 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 9.930e-19
Identity = 44/104 (42.31%), Postives = 63/104 (60.58%), Query Frame = 2
Query:  236 IPTSFGHELRACLRCRLVKTYDQFRESGCENCP-FFKMDEDHERVVDCTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDERVQY 544
            +P    H LRACL C LVKT DQF   GC+NC  + +M  + E V DCT+ +F+GII++M P  SW ++W R+  F PG Y ++V+  LP+ +    +   V Y
Sbjct:    6 VPKDLRH-LRACLLCSLVKTIDQFEYDGCDNCDAYLQMKGNREMVYDCTSSSFDGIIAMMSPEDSWVSKWQRVSNFKPGVYAVSVTGRLPQGIVRELKSRGVAY 108          
BLAST of DY271187 vs. ExPASy Swiss-Prot
Match: SPT41_MOUSE (Transcription elongation factor SPT4 1 OS=Mus musculus GN=Supt4h1 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 9.930e-19
Identity = 44/104 (42.31%), Postives = 63/104 (60.58%), Query Frame = 2
Query:  236 IPTSFGHELRACLRCRLVKTYDQFRESGCENCP-FFKMDEDHERVVDCTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDERVQY 544
            +P    H LRACL C LVKT DQF   GC+NC  + +M  + E V DCT+ +F+GII++M P  SW ++W R+  F PG Y ++V+  LP+ +    +   V Y
Sbjct:    6 VPKDLRH-LRACLLCSLVKTIDQFEYDGCDNCDAYLQMKGNREMVYDCTSSSFDGIIAMMSPEDSWVSKWQRVSNFKPGVYAVSVTGRLPQGIVRELKSRGVAY 108          
BLAST of DY271187 vs. ExPASy Swiss-Prot
Match: SPT4H_PONAB (Transcription elongation factor SPT4 OS=Pongo abelii GN=SUPT4H1 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.297e-18
Identity = 44/104 (42.31%), Postives = 63/104 (60.58%), Query Frame = 2
Query:  236 IPTSFGHELRACLRCRLVKTYDQFRESGCENCP-FFKMDEDHERVVDCTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDERVQY 544
            +P    H LRACL C LVKT DQF   GC+NC  + +M  + E V DCT+ +F+GII++M P  SW ++W R+  F PG Y ++V+  LP+ +    +   V Y
Sbjct:    6 VPKDLRH-LRACLLCSLVKTIDQFEYDGCDNCDAYLQMKGNREMVYDCTSSSFDGIIAMMSPGDSWVSKWQRVSNFKPGVYAVSVTGRLPQGIVRELKSRGVAY 108          
BLAST of DY271187 vs. ExPASy Swiss-Prot
Match: SPT4H_DANRE (Transcription elongation factor SPT4 OS=Danio rerio GN=supt4h1 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.694e-18
Identity = 43/90 (47.78%), Postives = 58/90 (64.44%), Query Frame = 2
Query:  236 IPTSFGHELRACLRCRLVKTYDQFRESGCENCP-FFKMDEDHERVVDCTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALP 502
            +P    H LRACL C LVKT DQF   GC+NC  + +M  + E V +CT+ +F+G+I++M P  SW A+W RIG F PG Y + V+  LP
Sbjct:    6 VPKDLRH-LRACLLCSLVKTIDQFEYDGCDNCESYLQMKGNREMVYECTSSSFDGVIAMMSPEDSWVAKWQRIGNFKPGVYAVTVTGRLP 94          
BLAST of DY271187 vs. ExPASy Swiss-Prot
Match: SPT4H_XENLA (Transcription elongation factor SPT4 OS=Xenopus laevis GN=supt4h1 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.212e-18
Identity = 44/104 (42.31%), Postives = 63/104 (60.58%), Query Frame = 2
Query:  236 IPTSFGHELRACLRCRLVKTYDQFRESGCENCP-FFKMDEDHERVVDCTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDERVQY 544
            +P    H LRACL C LVKT DQF   GC+NC  + +M  + E V DCT+ +F+GI+++M P  SW ++W RI  F PG Y ++V+  LP+ +    +   V Y
Sbjct:    6 VPKDLRH-LRACLLCSLVKTIDQFEYDGCDNCDAYLQMKGNREMVYDCTSSSFDGIVAMMSPDDSWVSKWQRITNFKPGVYAVSVTGRLPQGIVRELKSRGVVY 108          
The following BLAST results are available for this feature:
BLAST of DY271187 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
SPT42_ARATH1.851e-5786.09Transcription elongation factor SPT4 homolog 2 OS=... [more]
SPT41_ARATH1.567e-5684.35Transcription elongation factor SPT4 homolog 1 OS=... [more]
SPT4_NEUCR7.603e-1940.82Transcription elongation factor spt-4 OS=Neurospor... [more]
SPT4H_MACFA9.930e-1942.31Transcription elongation factor SPT4 OS=Macaca fas... [more]
SPT4H_HUMAN9.930e-1942.31Transcription elongation factor SPT4 OS=Homo sapie... [more]
SPT4H_BOVIN9.930e-1942.31Transcription elongation factor SPT4 OS=Bos taurus... [more]
SPT41_MOUSE9.930e-1942.31Transcription elongation factor SPT4 1 OS=Mus musc... [more]
SPT4H_PONAB1.297e-1842.31Transcription elongation factor SPT4 OS=Pongo abel... [more]
SPT4H_DANRE1.694e-1847.78Transcription elongation factor SPT4 OS=Danio reri... [more]
SPT4H_XENLA2.212e-1842.31Transcription elongation factor SPT4 OS=Xenopus la... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP9YC08FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271187 ID=DY271187; Name=DY271187; organism=Citrus clementina; type=EST; length=769bp
CAGAATACTAAAACTACAGTTGCAATGAAATTACAAGAATAACACCGATT
CCGGATTACCAGCAGCTTCCGAGCATTCGTCGTCGTGTCTTCTCTGGAAC
TCTCTTACTGGCCCTTAAAAGATCAAGGTCTCTGTCATCAAGAGACGAAA
CGACTTACAGATATTGTCGGGTGCCGCGAGAGAAGAAGCATCTAGTACCT
GGCTCGGGAGAACAATGGGAAGCGCACCGGCACAAATTCCAACAAGCTTC
GGGCATGAGCTGAGAGCTTGCCTCCGTTGTCGGCTTGTCAAAACCTATGA
TCAGTTTAGAGAATCGGGATGCGAGAACTGTCCCTTCTTCAAGATGGATG
AAGACCACGAGCGTGTTGTTGATTGTACTACCCCTAATTTTAATGGCATT
ATATCAGTCATGGATCCAACTAGAAGCTGGGCTGCTCGCTGGTTGCGAAT
TGGAAGATTTGTCCCTGGTTGTTATACTCTTGCTGTCTCAGAAGCCCTAC
CTGAGGACTTGCAGAACTTATGCGAAGACGAGCGCGTGCAATATGTGCCG
CCAAAACGTTAATGACAGTTTGAGCAGTGCATTGTCTGTAAAGATTATAT
CTGTTTCGGGTTACTTCGGAGATGACATGTTTAACGATTATATGCAACTG
TAGCTGCTAATGTTGACTTGAATTTCTTGTGCCCAATGCTTGTGTAATAA
TCCTATTTATGTTTGTAACTTGTATGCTGCGTTTTGATTTTTTAATGGAA
TTCTAGAAACTTTTGAGTT
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