DY271229

Overview
NameDY271229
Unique NameDY271229
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1071
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271229 vs. ExPASy Swiss-Prot
Match: 14KD_DAUCA (14 kDa proline-rich protein DC2.15 OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 4.750e-26
Identity = 65/136 (47.79%), Postives = 77/136 (56.62%), Query Frame = 2
Query:   29 MGSKTSASLALFLAVNILFFALVTACGXXXXXXXXXXXXXXXXXX-----GASCPRDALKLGVCANVLNGLLNVTIGTPPVQPCCTLIQGLADLEAAVCLCTAIKAXXXXXXXXXXXXXXXXXXVCSKSVPRGFQC 421
            MGSK SAS+ALF  +NILFFALV++                            CPRDALKLGVCA+VLN + NV IG+PP  PCC+L++GL +LEAAVCLCTAIKA                   C K VP GF+C
Sbjct:    1 MGSKNSASVALFFTLNILFFALVSSTEKCPDPYKPKPKPTPKPTPTPYPSAGKCPRDALKLGVCADVLNLVHNVVIGSPPTLPCCSLLEGLVNLEAAVCLCTAIKANILGKNLNLPIALSLVLNNCGKQVPNGFEC 136          
BLAST of DY271229 vs. ExPASy Swiss-Prot
Match: PRF1_SOLLC (36.4 kDa proline-rich protein OS=Solanum lycopersicum GN=TPRP-F1 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.027e-12
Identity = 35/84 (41.67%), Postives = 46/84 (54.76%), Query Frame = 2
Query:  170 SCPRDALKLGVCANVLNGLLNVTIGTPPVQPCCTLIQGLADLEAAVCLCTAIKAXXXXXXXXXXXXXXXXXXVCSKSVPRGFQC 421
            +CP DALKLG C +VL GL+++ IG    Q CC L+ GL DL+AA+CLCT I+                    C K  P+ F+C
Sbjct:  260 TCPIDALKLGACVDVLGGLIHIGIGGSAKQTCCPLLGGLVDLDAAICLCTTIRLKLLNINIILPIALQVLIDDCGKYPPKDFKC 343          
BLAST of DY271229 vs. ExPASy Swiss-Prot
Match: CCDP_MAIZE (Cortical cell-delineating protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.342e-12
Identity = 48/126 (38.10%), Postives = 59/126 (46.83%), Query Frame = 2
Query:   53 LALFLAVNILFFALVTACGXXXXXXXXXXXXXXXXXXGAS---CPRDALKLGVCANVLNGLLNVTIGTPPVQPCCTLIQGLADLEAAVCLCTAIKAXXXXXXXXXXXXXXXXXXVCSKSVPRGFQC 421
            +ALFLA+++LF A    C                     S   CP DALKL VCA VL GL  V +G P  + CC L++GL DL+AA+CLCTAIKA                   C +  P  F C
Sbjct:    5 VALFLALSLLFAATAHGCEPNCSGPVVPTPPVVPTPSSHSHGRCPIDALKLKVCAKVL-GL--VKVGLPQYEQCCPLLEGLVDLDAALCLCTAIKANVLGIHLNVPLSLNFILNNCGRICPEDFTC 127          
The following BLAST results are available for this feature:
BLAST of DY271229 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
14KD_DAUCA4.750e-2647.7914 kDa proline-rich protein DC2.15 OS=Daucus carot... [more]
PRF1_SOLLC1.027e-1241.6736.4 kDa proline-rich protein OS=Solanum lycopersi... [more]
CCDP_MAIZE1.342e-1238.10Cortical cell-delineating protein OS=Zea mays PE=2... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP9YE15FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271229 ID=DY271229; Name=DY271229; organism=Citrus clementina; type=EST; length=1071bp
GGAAAAGCTAGTGTCTAGGATTTAAGAGATGGGTTCAAAAACCTCAGCTT
CACTTGCTCTCTTTCTTGCAGTCAACATTCTCTTTTTTGCCCTAGTCACT
GCCTGTGGCTCTTGCCCTTCTCCTAAACCAAAACCCAAGCCAAAGCCAAC
TCCCAGCCCGTCAGGGGCTTCCTGCCCAAGAGATGCCCTTAAACTAGGTG
TATGCGCCAACGTGCTTAATGGTTTGCTTAATGTCACTATTGGCACACCC
CCGGTACAACCATGCTGCACTCTTATTCAAGGCCTTGCTGATCTTGAGGC
AGCTGTTTGCCTTTGCACTGCCATCAAAGCGAACATTTTGGGCATCAACC
TTAATATCCCGCTTTCACTCAGCCTTCTTTTGAACGTCTGTTCAAAGAGT
GTGCCCCGTGGTTTCCAGTGTGCTTAATGATGATCATATATTTCTGTATC
TTCGTCTTTAATTTAATTTACAGGTTCTGGGATTATGAGTTCTGCACGGT
AATGTGTGTTACTGGTAATTTCTGTTGTTTAATAATTTTTCATACAGGTG
GTTTGATTGCAAGATGACAGTGAATAAGTCTGGATTTGGTTTAACAATCA
AAAGCTACCTATATAAAATATAATACCCCCAACTTTCCTTGTACAAAATT
CGCTATAAAAAAAAAGCATTGCATATCAAATCTTTTGCCACCAATGGGGC
TACTCCAGTTTAAAAAAAAATCTCTATTTTCCCTCCAGCCTATTTCCCCA
AAACCTCATCCGTATTTACTGTTCTTTACCTTTTTCTCGGGTATCTCCGG
GCCTGTATTCAAAAATCCAGGAATGTCTCCTCGTCCCAAAAACAAAATTA
AATCCCACACGTACGAAAACCCCCTCTCGGTACACAAATGGAAACCGCTA
TTTTATCATACAAGGAAACTAATAACCATTCTCTTGAACAAACTGCTCCA
GATAAAATAGAGAAAGATGACCCAAAGCAATTTATAAAAAAAAGGAGAAT
AATCAGACAGTCCTGTTAACGAAACTCAAGTCTCACATATATACATAATA
AACACTATAAATGTCCCCCGT
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