DY271230

Overview
NameDY271230
Unique NameDY271230
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1063
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY271230_ssr685 microsatellite DY271230_ssr685:685..738. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14379 contig Ccv1_Contig14379:41..1103. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY271230 vs. ExPASy Swiss-Prot
Match: AGL8_SOLTU (Agamous-like MADS-box protein AGL8 homolog OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 3.673e-63
Identity = 124/180 (68.89%), Postives = 144/180 (80.00%), Query Frame = 3
Query:  135 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSISXXXXXXXXXXXXXXXXAKKVHFRNSQIS 674
            MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEV LIVFSTKGKLFEY+ DSCMER+LERYERY +AERQL   +    G+WTLE++KLKAR+EVLQRNQKH++GEDL  L++KELQ++E Q+DS LK IRSRKNQLM +SIS                +KKV  R  +++
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVGLIVFSTKGKLFEYANDSCMERLLERYERYSFAERQLVPTDHTSPGSWTLEHAKLKARLEVLQRNQKHYVGEDLESLNMKELQNLEHQLDSALKHIRSRKNQLMHESISVLQKQDRALQEQNNQLSKKVKEREKEVA 180          
BLAST of DY271230 vs. ExPASy Swiss-Prot
Match: AP1_SINAL (Floral homeotic protein APETALA 1 OS=Sinapis alba GN=AP1 PE=2 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 1.182e-61
Identity = 117/152 (76.97%), Postives = 138/152 (90.79%), Query Frame = 3
Query:  135 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSIS 590
            MGRGRVQLKRIENKINRQVTFSKRR+GLLKKAHEISVLCDAEVAL+VFS KGKLFEYSTDSCME+ILERYERY YAERQL A E + N NW++EY++LKA++E+L+RNQ+H++GEDL  +S KELQ++EQQ+D+ LK IRSRKNQLM  SI+
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRAGLLKKAHEISVLCDAEVALVVFSHKGKLFEYSTDSCMEKILERYERYSYAERQLIAPESDVNTNWSMEYNRLKAKIELLERNQRHYLGEDLQAMSSKELQNLEQQLDTALKHIRSRKNQLMHDSIN 152          
BLAST of DY271230 vs. ExPASy Swiss-Prot
Match: AP1_ARATH (Floral homeotic protein APETALA 1 OS=Arabidopsis thaliana GN=AP1 PE=1 SV=2)

HSP 1 Score: 237.269 bits (604), Expect = 1.182e-61
Identity = 116/152 (76.32%), Postives = 139/152 (91.45%), Query Frame = 3
Query:  135 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSIS 590
            MGRGRVQLKRIENKINRQVTFSKRR+GLLKKAHEISVLCDAEVAL+VFS KGKLFEYSTDSCME+ILERYERY YAERQL A E + N NW++EY++LKA++E+L+RNQ+H++GEDL  +S KELQ++EQQ+D+ LK IR+RKNQLM +SI+
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRAGLLKKAHEISVLCDAEVALVVFSHKGKLFEYSTDSCMEKILERYERYSYAERQLIAPESDVNTNWSMEYNRLKAKIELLERNQRHYLGEDLQAMSPKELQNLEQQLDTALKHIRTRKNQLMYESIN 152          
BLAST of DY271230 vs. ExPASy Swiss-Prot
Match: AGL8_SOLLC (Agamous-like MADS-box protein AGL8 homolog OS=Solanum lycopersicum GN=TDR4 PE=2 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 1.543e-61
Identity = 127/185 (68.65%), Postives = 143/185 (77.30%), Query Frame = 3
Query:  135 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSISXXXXXXXXXXXXXXXXAKKVHFRN---SQISAL 680
            MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEV LIVFSTKGKLFEY+ DSCMERILERYERY +AE+QL   +     +WTLE+ KLKAR+EVLQRNQKH++GEDL  LS+KELQ++E Q+DS LK IRSRKNQLM +SIS                +KKV  R     QIS +
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVGLIVFSTKGKLFEYANDSCMERILERYERYSFAEKQLVPTDHTSPVSWTLEHRKLKARLEVLQRNQKHYVGEDLESLSMKELQNLEHQLDSALKHIRSRKNQLMHESISVLQKKDRALQEQNNQLSKKVKEREKSAQQISGI 185          
BLAST of DY271230 vs. ExPASy Swiss-Prot
Match: AGL8_ARATH (Agamous-like MADS-box protein AGL8 OS=Arabidopsis thaliana GN=AGL8 PE=1 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 1.543e-61
Identity = 116/152 (76.32%), Postives = 137/152 (90.13%), Query Frame = 3
Query:  135 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSIS 590
            MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFS+KGKLFEYSTDSCMERILERY+RY Y+++QL   ++  + NW LE++KLKAR+EVL++N+++FMGEDL  LSLKELQS+E Q+D+ +K IRSRKNQ M +SIS
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSSKGKLFEYSTDSCMERILERYDRYLYSDKQLVGRDVSQSENWVLEHAKLKARVEVLEKNKRNFMGEDLDSLSLKELQSLEHQLDAAIKSIRSRKNQAMFESIS 152          
BLAST of DY271230 vs. ExPASy Swiss-Prot
Match: AGL8_SOLCO (Agamous-like MADS-box protein AGL8 homolog OS=Solanum commersonii GN=SCM1 PE=2 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 2.911e-60
Identity = 121/179 (67.60%), Postives = 141/179 (78.77%), Query Frame = 3
Query:  135 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSISXXXXXXXXXXXXXXXXAKKVHFRNSQI 671
            MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEV LIVFSTKGKLFEY+TDSCMER+LERYERY +AE+QL   +    G+WTLE +KLKAR+EVLQRN+K ++GEDL  L++KELQ++E Q+ S LK IRSRKNQLM +SIS                +KKV  R  ++
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVGLIVFSTKGKLFEYATDSCMERLLERYERYSFAEKQLVPTDHTSPGSWTLENAKLKARLEVLQRNEKLYVGEDLESLNMKELQNLEHQLASALKHIRSRKNQLMHESISVLQKQDRALQEQNNQLSKKVKEREKEV 179          
BLAST of DY271230 vs. ExPASy Swiss-Prot
Match: AGL8_SINAL (Agamous-like MADS-box protein AGL8 homolog OS=Sinapis alba GN=AGL8 PE=2 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 2.911e-60
Identity = 113/152 (74.34%), Postives = 136/152 (89.47%), Query Frame = 3
Query:  135 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSIS 590
            MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVAL++FS+KGKLFEYSTDSCME+ILERY+RY Y+++QL   +I  + NW LE++KLKAR+EVL++N+++FMGEDL  LSLKELQS+E Q+ + +K IRSRKNQ M +SIS
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALVIFSSKGKLFEYSTDSCMEKILERYDRYLYSDKQLVGRDISQSENWVLEHAKLKARVEVLEKNKRNFMGEDLDSLSLKELQSLEHQLHAAIKSIRSRKNQAMFESIS 152          
BLAST of DY271230 vs. ExPASy Swiss-Prot
Match: MAD14_ORYSJ (MADS-box transcription factor 14 OS=Oryza sativa subsp. japonica GN=MADS14 PE=1 SV=2)

HSP 1 Score: 226.483 bits (576), Expect = 2.086e-58
Identity = 112/152 (73.68%), Postives = 134/152 (88.16%), Query Frame = 3
Query:  135 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSIS 590
            MGRG+VQLKRIENKINRQVTFSKRRSGLLKKA+EISVLCDAEVALI+FSTKGKL+EY+TDSCM++ILERYERY YAE+ L + E +  GNW  EY KLKA++E +Q+ QKH MGEDL  L+LKELQ +EQQ+++ LK IRSRK+QLML+SI+
Sbjct:    1 MGRGKVQLKRIENKINRQVTFSKRRSGLLKKANEISVLCDAEVALIIFSTKGKLYEYATDSCMDKILERYERYSYAEKVLISAESDTQGNWCHEYRKLKAKVETIQKCQKHLMGEDLESLNLKELQQLEQQLENSLKHIRSRKSQLMLESIN 152          
BLAST of DY271230 vs. ExPASy Swiss-Prot
Match: MAD14_ORYSI (MADS-box transcription factor 14 OS=Oryza sativa subsp. indica GN=MADS14 PE=2 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 3.012e-57
Identity = 110/152 (72.37%), Postives = 133/152 (87.50%), Query Frame = 3
Query:  135 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNGNWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSIS 590
            MGRG+VQLKRIEN INRQVTFSKRRSGLLKKA+EISVLCDAEVALI+FSTKGKL++Y+TDSCM++ILERYERY YAE+ L + E +  GNW  EY KLKA++E +Q+ QKH MGEDL  L+LKELQ +EQQ+++ LK IRSRK+QLML+SI+
Sbjct:    1 MGRGKVQLKRIENTINRQVTFSKRRSGLLKKANEISVLCDAEVALIIFSTKGKLYKYATDSCMDKILERYERYSYAEKVLISAESDTQGNWCHEYRKLKAKVETIQKCQKHLMGEDLESLNLKELQQLEQQLENSLKHIRSRKSQLMLESIN 152          
BLAST of DY271230 vs. ExPASy Swiss-Prot
Match: CAL_ARATH (Transcription factor CAULIFLOWER OS=Arabidopsis thaliana GN=CAL PE=1 SV=3)

HSP 1 Score: 222.246 bits (565), Expect = 3.934e-57
Identity = 109/154 (70.78%), Postives = 138/154 (89.61%), Query Frame = 3
Query:  135 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMERILERYERYCYAERQLQANEIEPNG--NWTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSIS 590
            MGRGRV+LKRIENKINRQVTFSKRR+GLLKKA EISVLCDAEV+LIVFS KGKLFEYS++SCME++LERYERY YAERQL A +   N   NW++EYS+LKA++E+L+RNQ+H++GE+L  +SLK+LQ++EQQ+++ LK IRSRKNQLM +S++
Sbjct:    1 MGRGRVELKRIENKINRQVTFSKRRTGLLKKAQEISVLCDAEVSLIVFSHKGKLFEYSSESCMEKVLERYERYSYAERQLIAPDSHVNAQTNWSMEYSRLKAKIELLERNQRHYLGEELEPMSLKDLQNLEQQLETALKHIRSRKNQLMNESLN 154          
The following BLAST results are available for this feature:
BLAST of DY271230 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
AGL8_SOLTU3.673e-6368.89Agamous-like MADS-box protein AGL8 homolog OS=Sola... [more]
AP1_SINAL1.182e-6176.97Floral homeotic protein APETALA 1 OS=Sinapis alba ... [more]
AP1_ARATH1.182e-6176.32Floral homeotic protein APETALA 1 OS=Arabidopsis t... [more]
AGL8_SOLLC1.543e-6168.65Agamous-like MADS-box protein AGL8 homolog OS=Sola... [more]
AGL8_ARATH1.543e-6176.32Agamous-like MADS-box protein AGL8 OS=Arabidopsis ... [more]
AGL8_SOLCO2.911e-6067.60Agamous-like MADS-box protein AGL8 homolog OS=Sola... [more]
AGL8_SINAL2.911e-6074.34Agamous-like MADS-box protein AGL8 homolog OS=Sina... [more]
MAD14_ORYSJ2.086e-5873.68MADS-box transcription factor 14 OS=Oryza sativa s... [more]
MAD14_ORYSI3.012e-5772.37MADS-box transcription factor 14 OS=Oryza sativa s... [more]
CAL_ARATH3.934e-5770.78Transcription factor CAULIFLOWER OS=Arabidopsis th... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP9YE16FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271230 ID=DY271230; Name=DY271230; organism=Citrus clementina; type=EST; length=1063bp
ATGCAGCACACTACTCACTACCTGCTCTAATCTCTTTTTCTATAAAAGTA
CAGAGATTAGAGAGATACCCAGAAGAAGCCTGCAAGTTTCTTTAGTGGAG
AATTGCTGGTGATAATTATTAATAGATAGTTAATATGGGGAGAGGAAGGG
TGCAGCTGAAGAGGATAGAGAACAAGATCAATAGACAAGTGACTTTCTCT
AAGAGAAGGTCTGGTTTATTGAAAAAGGCCCATGAGATCTCTGTGCTTTG
TGACGCTGAAGTTGCTTTGATCGTCTTCTCCACTAAAGGCAAGCTCTTTG
AATACTCTACTGATTCATGCATGGAAAGAATCCTTGAACGATATGAGAGG
TATTGTTATGCGGAGAGGCAGCTTCAAGCAAATGAGATTGAACCAAATGG
AAACTGGACATTGGAATATTCCAAGCTTAAAGCTAGGATGGAGGTTTTAC
AAAGAAATCAAAAGCATTTCATGGGAGAGGATCTTGCAGACTTAAGTCTC
AAAGAGCTTCAAAGTGTAGAGCAGCAGATTGATTCTGGTCTTAAACTCAT
TCGATCAAGAAAGAACCAACTCATGCTTCAATCCATTTCAGAGCTTCAGA
AAAAGGACAAGTTATTGAAAGAGCAAAACAACTTGCTTGCAAAGAAGGTA
CACTTTCGCAATTCTCAAATATCAGCCCTCTAGCTATATATATATATATA
TATATATATATATATATATATATATATATATATATATAAAATATCCATTT
TTGGTTCTGAAAAATTTTTTGCTTATTTATACCATATTTTGATTAATTGA
GACCAGGTAAAAGAAAAAGGAAAACCTTTTTGGCCCAAGGAGGGGCCGTG
CAGGGGAACACCCACCACCCCCCTAATCTTGGGGGGGAACTCCTCCCAGG
GTTTCCTTAAGGGCAAATATTGCCCAAATCCCCTTACCAAAGGGGGGGGG
GGCCGGGAGAGGGAGGAGAAGAAATCCCCGAAGGAGCACCCCCCCCACCC
CCCCCGCGCCCCCCGCTGGGATCCTCCCCCCCCCCTTTTTAAAATATTTA
AAAAAAAAGAGAT
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