DY271414

Overview
NameDY271414
Unique NameDY271414
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length962
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY271414 vs. ExPASy Swiss-Prot
Match: TM147_RAT (Transmembrane protein 147 OS=Rattus norvegicus GN=Tmem147 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 4.211e-23
Identity = 56/154 (36.36%), Postives = 85/154 (55.19%), Query Frame = 3
Query:  111 MTVFHFFNCAILTFGPHAVYYSATPLSEYDTLGTSVKAALVYLGTALVKLVCLATFLKVSENDNFDPYQELLKALIGFIDVAGLYFALTQLTHRNISQNHKFQAVGLGWAFADSVLHRLAPLWVGARGLEFTWDYLLQGLEANANLVLSISLAA 572
            MT+FHF NC  L + P+ + Y  + LSEY+     V+A + YL   L K++ LATF    E   +D   E +KA +   D+ GL   +++   +     +K     LGWA A+ ++ R  PLWVGARG+EF W Y+   +++N +LV  I  +A
Sbjct:    1 MTLFHFGNCFALAYFPYFITYKCSGLSEYNAFWKCVQAGVTYLFVQLCKMLFLATFFPTWEGGIYDFIGEFMKASVDVADLIGLNLVMSRNAGKG---EYKIMVAALGWATAELIMSRCIPLWVGARGIEFDWKYIQMSIDSNISLVHYIVASA 151          
BLAST of DY271414 vs. ExPASy Swiss-Prot
Match: TM147_MOUSE (Transmembrane protein 147 OS=Mus musculus GN=Tmem147 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 4.211e-23
Identity = 56/154 (36.36%), Postives = 85/154 (55.19%), Query Frame = 3
Query:  111 MTVFHFFNCAILTFGPHAVYYSATPLSEYDTLGTSVKAALVYLGTALVKLVCLATFLKVSENDNFDPYQELLKALIGFIDVAGLYFALTQLTHRNISQNHKFQAVGLGWAFADSVLHRLAPLWVGARGLEFTWDYLLQGLEANANLVLSISLAA 572
            MT+FHF NC  L + P+ + Y  + LSEY+     V+A + YL   L K++ LATF    E   +D   E +KA +   D+ GL   +++   +     +K     LGWA A+ ++ R  PLWVGARG+EF W Y+   +++N +LV  I  +A
Sbjct:    1 MTLFHFGNCFALAYFPYFITYKCSGLSEYNAFWKCVQAGVTYLFVQLCKMLFLATFFPTWEGGIYDFIGEFMKASVDVADLIGLNLVMSRNAGKG---EYKIMVAALGWATAELIMSRCIPLWVGARGIEFDWKYIQMSIDSNISLVHYIVASA 151          
BLAST of DY271414 vs. ExPASy Swiss-Prot
Match: TM147_HUMAN (Transmembrane protein 147 OS=Homo sapiens GN=TMEM147 PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 4.211e-23
Identity = 56/154 (36.36%), Postives = 85/154 (55.19%), Query Frame = 3
Query:  111 MTVFHFFNCAILTFGPHAVYYSATPLSEYDTLGTSVKAALVYLGTALVKLVCLATFLKVSENDNFDPYQELLKALIGFIDVAGLYFALTQLTHRNISQNHKFQAVGLGWAFADSVLHRLAPLWVGARGLEFTWDYLLQGLEANANLVLSISLAA 572
            MT+FHF NC  L + P+ + Y  + LSEY+     V+A + YL   L K++ LATF    E   +D   E +KA +   D+ GL   +++   +     +K     LGWA A+ ++ R  PLWVGARG+EF W Y+   +++N +LV  I  +A
Sbjct:    1 MTLFHFGNCFALAYFPYFITYKCSGLSEYNAFWKCVQAGVTYLFVQLCKMLFLATFFPTWEGGIYDFIGEFMKASVDVADLIGLNLVMSRNAGKG---EYKIMVAALGWATAELIMSRCIPLWVGARGIEFDWKYIQMSIDSNISLVHYIVASA 151          
BLAST of DY271414 vs. ExPASy Swiss-Prot
Match: TM147_BOVIN (Transmembrane protein 147 OS=Bos taurus GN=TMEM147 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 4.211e-23
Identity = 56/154 (36.36%), Postives = 85/154 (55.19%), Query Frame = 3
Query:  111 MTVFHFFNCAILTFGPHAVYYSATPLSEYDTLGTSVKAALVYLGTALVKLVCLATFLKVSENDNFDPYQELLKALIGFIDVAGLYFALTQLTHRNISQNHKFQAVGLGWAFADSVLHRLAPLWVGARGLEFTWDYLLQGLEANANLVLSISLAA 572
            MT+FHF NC  L + P+ + Y  + LSEY+     V+A + YL   L K++ LATF    E   +D   E +KA +   D+ GL   +++   +     +K     LGWA A+ ++ R  PLWVGARG+EF W Y+   +++N +LV  I  +A
Sbjct:    1 MTLFHFGNCFALAYFPYFITYKCSGLSEYNAFWKCVQAGVTYLFVQLCKMLFLATFFPTWEGGIYDFIGEFMKASVDVADLIGLNLVMSRNAGKG---EYKIMVAALGWATAELIMSRCIPLWVGARGIEFDWKYIQMSIDSNISLVHYIVASA 151          
BLAST of DY271414 vs. ExPASy Swiss-Prot
Match: TM147_XENTR (Transmembrane protein 147 OS=Xenopus tropicalis GN=tmem147 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.225e-22
Identity = 56/156 (35.90%), Postives = 87/156 (55.77%), Query Frame = 3
Query:  111 MTVFHFFNCAILTFGPHAVYYSATPLSEYDTLGTSVKAALVYLGTALVKLVCLATFLKVSEN--DNFDPYQELLKALIGFIDVAGLYFALTQLTHRNISQNHKFQAVGLGWAFADSVLHRLAPLWVGARGLEFTWDYLLQGLEANANLVLSISLAA 572
            MT+FHF NC  L + P+ + Y  + LSEY+     V+A   YL   L K++ LATF    E     +D   E +KA +   D+ GL+  +++   +     +K     +GWA A+ V+ R  PLWVGARG+EF W Y+   +++N +LV  +++AA
Sbjct:    1 MTLFHFGNCFALAYFPYFITYKCSGLSEYNAFWRCVQAGATYLCVQLCKMLFLATFFPTWEGAVGAYDFIGEFMKATVDLADLLGLHLVMSRNAGKG---EYKIMVAAMGWATAELVMSRCLPLWVGARGIEFDWKYIQMSIDSNISLVHYMAVAA 153          
BLAST of DY271414 vs. ExPASy Swiss-Prot
Match: TM147_XENLA (Transmembrane protein 147 OS=Xenopus laevis GN=tmem147 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.225e-22
Identity = 56/156 (35.90%), Postives = 87/156 (55.77%), Query Frame = 3
Query:  111 MTVFHFFNCAILTFGPHAVYYSATPLSEYDTLGTSVKAALVYLGTALVKLVCLATFLKVSEN--DNFDPYQELLKALIGFIDVAGLYFALTQLTHRNISQNHKFQAVGLGWAFADSVLHRLAPLWVGARGLEFTWDYLLQGLEANANLVLSISLAA 572
            MT+FHF NC  L + P+ + Y  + LSEY+     V+A   YL   L K++ LATF    E     +D   E +KA +   D+ GL+  +++   +     +K     +GWA A+ V+ R  PLWVGARG+EF W Y+   +++N +LV  +++AA
Sbjct:    1 MTLFHFGNCFALAYFPYFITYKCSGLSEYNAFWRCVQAGATYLCVQLCKMLFLATFFPTWEGAAGAYDFIGEFMKATVDLADLLGLHLVMSRNAGKG---EYKIMVAAMGWATAELVMSRCLPLWVGARGIEFDWKYIQMSIDSNISLVHYMAVAA 153          
BLAST of DY271414 vs. ExPASy Swiss-Prot
Match: TM147_DANRE (Transmembrane protein 147 OS=Danio rerio GN=tmem147 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.225e-22
Identity = 56/156 (35.90%), Postives = 86/156 (55.13%), Query Frame = 3
Query:  111 MTVFHFFNCAILTFGPHAVYYSATPLSEYDTLGTSVKAALVYLGTALVKLVCLATFLKVSENDN--FDPYQELLKALIGFIDVAGLYFALTQLTHRNISQNHKFQAVGLGWAFADSVLHRLAPLWVGARGLEFTWDYLLQGLEANANLVLSISLAA 572
            MT+FHF NC  L + P+ + Y  + LSEY+     V+A   YL   L K++ LATF    E     +D   E +KA +   D+ GL+  +++   +     +K     +GWA A+ ++ R  PLWVGARG+EF W Y+    ++N +LV  I++AA
Sbjct:    1 MTLFHFGNCFSLAYFPYFITYKCSGLSEYNAFWRCVQAGATYLFVRLCKMLFLATFFPTWEGGAGVYDFVGEFMKATVDMADLLGLHLVMSRNAGKG---EYKIMVAAMGWATAELIMSRCIPLWVGARGIEFDWKYIQMSFDSNISLVHYIAMAA 153          
The following BLAST results are available for this feature:
BLAST of DY271414 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
TM147_RAT4.211e-2336.36Transmembrane protein 147 OS=Rattus norvegicus GN=... [more]
TM147_MOUSE4.211e-2336.36Transmembrane protein 147 OS=Mus musculus GN=Tmem1... [more]
TM147_HUMAN4.211e-2336.36Transmembrane protein 147 OS=Homo sapiens GN=TMEM1... [more]
TM147_BOVIN4.211e-2336.36Transmembrane protein 147 OS=Bos taurus GN=TMEM147... [more]
TM147_XENTR1.225e-2235.90Transmembrane protein 147 OS=Xenopus tropicalis GN... [more]
TM147_XENLA1.225e-2235.90Transmembrane protein 147 OS=Xenopus laevis GN=tme... [more]
TM147_DANRE1.225e-2235.90Transmembrane protein 147 OS=Danio rerio GN=tmem14... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP9YO13FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271414 ID=DY271414; Name=DY271414; organism=Citrus clementina; type=EST; length=962bp
ATAAAAATACTTTTAAGGGACTGACTTGCGAGCTTGAACTCTCTCGCTTC
CTACTTGTTGTTGGATCACCACAGCGGTTTCCGTGGCGGAGAGAGGAAGG
TTAGGTAAAGATGACGGTTTTTCATTTCTTCAACTGTGCGATTCTGACTT
TCGGCCCTCACGCAGTCTACTACTCCGCCACGCCCTTATCCGAGTATGAT
ACACTTGGTACCTCTGTGAAAGCGGCTCTCGTTTATCTCGGCACAGCTCT
TGTTAAGCTTGTTTGCTTAGCGACGTTTCTTAAGGTATCGGAGAATGATA
ACTTCGATCCATATCAGGAACTGTTGAAAGCATTGATCGGTTTTATAGAT
GTTGCTGGGCTTTACTTTGCCTTAACCCAGTTGACTCACAGGAACATTTC
TCAGAATCATAAATTTCAAGCTGTTGGACTGGGGTGGGCTTTTGCTGATT
CTGTTCTACATAGATTGGCTCCACTTTGGGTGGGTGCTAGAGGACTAGAG
TTTACTTGGGACTACCTTCTTCAAGGGCTAGAAGCTAATGCAAATTTGGT
GTTGAGTATTTCCCTTGCTGCATTTGGGATCTTTGATGTGGCTTCGCAAA
AACAAACCGAAAGACCGTTGATTCCCATAATATATGCATGTGCCGGGATT
GTTGCAACCATGCCATCTATTATATGCTATTTGAAGCGGGGACCGGGATG
GCAATTTCCAAAGGTGGTGGGGTTTGAACTTTTTACTTCGTTGGGGGAGG
CCTTCACTCGTTGGCCACCCTTCTCCGCGGGTTCAGACCTTCGCCTAGAC
GCCCGGAGAAAGCGAAACATTCCTCTCGGACCATGGATTGAGGTCTCTTT
TTCCCCACCCCCTCTCTTCCCTCTACCGGGCCCGGTCTCTATCAACCTCA
CTCCCGCTGCGGGCGACCCTGATCCTAGGCGTGGCGGCTGACTTTACTTT
GTCATACCACTT
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