DY271430

Overview
NameDY271430
Unique NameDY271430
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length942
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY271430_ssr641 microsatellite DY271430_ssr641:641..650. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig3924 contig Ccv1_Contig3924:1..942. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DY271430 vs. ExPASy Swiss-Prot
Match: Y1487_ARATH (Uncharacterized protein At1g14870 OS=Arabidopsis thaliana GN=At1g14870 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.994e-30
Identity = 35/55 (63.64%), Postives = 41/55 (74.55%), Query Frame = 3 
Query:  327 CGCLYSACYRSKMRQQYMLKGGPCGDCLVHFCCETCALSQEYRELKARGFHMSPG 491
            C C+YS  YR KMR QY +KG  C DCL HFCCE C+L+Q+YRELK RG+ MS G
Sbjct:   71 CACIYSCFYRGKMRAQYNIKGDDCTDCLKHFCCELCSLTQQYRELKHRGYDMSLG 125

HSP 2 Score: 70.0922 bits (170), Expect = 1.994e-30
Identity = 32/69 (46.38%), Postives = 43/69 (62.32%), Query Frame = 2 
Query:  119 QHQHANVHQLVEGPWSSGLCDCFPDXXXXXXXXXXXXXXFGRIADIVDKGSSSCSVSGALFPVISLVTG 325
            QH HA  H   EG WS+G CDCF D              FG++A+IVD+GS+SC  +GAL+ +I++VTG
Sbjct:    4 QHLHAKPH--AEGEWSTGFCDCFSDCKNCCITFWCPCITFGQVAEIVDRGSTSCGTAGALYALIAVVTG 70
The following BLAST results are available for this feature:
BLAST of DY271430 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y1487_ARATH1.994e-3063.64Uncharacterized protein At1g14870 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP9YP11FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271430 ID=DY271430; Name=DY271430; organism=Citrus clementina; type=EST; length=942bp
CATTCGTTCCCTTATCCCACACTGTAATTAGTTGTCCATCATCATGAACT
CCTCCAGTTACCCCAACCATAAGTTTGATCATCCCAATGTGGCAACCGGC
GTACCGGTAGCTGGTTTCCAGCACCAACATGCGAATGTGCATCAGCTCGT
AGAGGGACCTTGGTCCTCAGGACTCTGTGACTGCTTCCCCGATTGCTCAA
CCTGTTGCTTGACATGTTGGTGCCCCTGCATCACTTTTGGTCGAATTGCT
GATATTGTTGACAAAGGATCTTCTTCTTGTAGTGTGAGTGGCGCACTGTT
TCCTGTAATATCTTTGGTGACTGGCCTGCGGGTGCTTATACTCGGCCTGC
TATCGATCTAAAATGAGGCAGCAGTACATGTTAAAAGGCGGGCCTTGTGG
GGATTGCTTGGTTCATTTTTGCTGCGAGACGTGTGCCTTGAGTCAAGAAT
ATCGCGAGCTCAAAGCCCGTGGATTCCACATGTCTCCTGGTAATTAATTT
ATTTCCCTGATGATGATTCAATAAATTATTCAATCATTGTTTAGATTAAT
TTCCCTCTCTGTTTTTTTTACTTGGCCGGGTGCCAAAATATCCCTACACA
TTTTATGCCCTTTTTGAATTTCCTATCCTGGGGCTACTCCATATATATAT
AGGAGGGCCTGGAAACTGGAAGAGACCAAACAGGGGAATGGAAATGGCCT
CCACCGCCCCGGTAATGGAACCTGGCCTGATAAGATAAAGTGGATGACCC
GCCAATAAACCAAACTGAATTCTTCCCACCCAATTTTTAAATATTCACCC
CCCTGGGGAAGCCGGAAAATTATACGCCGGTTACCCAACTTATTTCGCTG
GTTTAAAACCTCCCTCCCAACCACCCCCCCCTTGTCCCCCCCTTCAGCCC
CTAGAACGTCAACAAATCTCTCTAAAGAACCCCTTCTCCTTA
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