DY271437

Overview
NameDY271437
Unique NameDY271437
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length910
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY271437_ssr183 microsatellite DY271437_ssr183:183..194. BLAST: Citrus ESTs to Prunus persica proteins V1
DY271437_ssr195 microsatellite DY271437_ssr195:195..206. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig3927 contig Ccv1_Contig3927:1..910. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY271437 vs. ExPASy Swiss-Prot
Match: APIP_XENLA (APAF1-interacting protein homolog OS=Xenopus laevis GN=apip PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 5.742e-43
Identity = 95/197 (48.22%), Postives = 120/197 (60.91%), Query Frame = 3
Query:  252 RVLISELCRHFYTLGWVSGTGGSITIKVHDDSIPKPQQLILMSPSGVQKERMEPEDMYVLSGNGTTLXXXXXXXXXXXXXXCSDCAPLFMKAYEKRDAGAVIHSHGIESCLVTMINPMSKEFRITHMEMIKGIK---GHGYY---DELVVPIIENTAYENELTDSLAKAIDAYPKATPVLVRNHGIYVWGDPWINAK 824
            R LI ELCR FY LGWV+GTGG I++K  D+        I ++PSGVQKER++P+D++V   +   +               S C PLFM AY  RDAGAVIH+H   + + T++ P  KEF ITH EMIKGIK     GYY   D L VPI+ENT  E +L + +A+A+  YP    VLVR HG+YVWGD W  AK
Sbjct:   22 RNLIPELCRQFYNLGWVTGTGGGISLKYGDE--------IYIAPSGVQKERIQPDDLFVCDIDEKDISCPPPYRNLKK----SQCTPLFMNAYTMRDAGAVIHTHSKAAVMATLMFP-GKEFLITHQEMIKGIKKGTSGGYYRYNDMLAVPIVENTPEEKDLKERMARAMTEYPDTCAVLVRRHGVYVWGDTWEKAK 205          

HSP 2 Score: 23.8682 bits (50), Expect = 5.742e-43
Identity = 11/20 (55.00%), Postives = 11/20 (55.00%), Query Frame = 2
Query:  824 TSAECNPYLFDAANQPLQRG 883
            T  EC  YLFD A Q  Q G
Sbjct:  206 TMCECYDYLFDIAVQMKQHG 225          
BLAST of DY271437 vs. ExPASy Swiss-Prot
Match: APIP_HUMAN (APAF1-interacting protein OS=Homo sapiens GN=APIP PE=1 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 5.749e-43
Identity = 97/197 (49.24%), Postives = 122/197 (61.93%), Query Frame = 3
Query:  252 RVLISELCRHFYTLGWVSGTGGSITIKVHDDSIPKPQQLILMSPSGVQKERMEPEDMYVLSGNGTTLXXXXXXXXXXXXXXCSDCAPLFMKAYEKRDAGAVIHSHGIESCLVTMINPMSKEFRITHMEMIKGIK---GHGYY---DELVVPIIENTAYENELTDSLAKAIDAYPKATPVLVRNHGIYVWGDPWINAK 824
            R LI ELC+ FY LGWV+GTGG I++K  D+        I ++PSGVQKER++PEDM+V   N   +               S C PLFM AY  R AGAVIH+H   + + T++ P  +EF+ITH EMIKGIK     GYY   D LVVPIIENT  E +L D +A A++ YP +  VLVR HG+YVWG+ W  AK
Sbjct:   25 RYLIPELCKQFYHLGWVTGTGGGISLKHGDE--------IYIAPSGVQKERIQPEDMFVCDINEKDISGPSPSKKLKK----SQCTPLFMNAYTMRGAGAVIHTHSKAAVMATLLFP-GREFKITHQEMIKGIKKCTSGGYYRYDDMLVVPIIENTPEEKDLKDRMAHAMNEYPDSCAVLVRRHGVYVWGETWEKAK 208          
BLAST of DY271437 vs. ExPASy Swiss-Prot
Match: APIP_CHICK (APAF1-interacting protein homolog OS=Gallus gallus GN=APIP PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 9.748e-43
Identity = 96/197 (48.73%), Postives = 121/197 (61.42%), Query Frame = 3
Query:  252 RVLISELCRHFYTLGWVSGTGGSITIKVHDDSIPKPQQLILMSPSGVQKERMEPEDMYVLSGNGTTLXXXXXXXXXXXXXXCSDCAPLFMKAYEKRDAGAVIHSHGIESCLVTMINPMSKEFRITHMEMIKGIK---GHGYY---DELVVPIIENTAYENELTDSLAKAIDAYPKATPVLVRNHGIYVWGDPWINAK 824
            R LI ELCR FY LGWV+GTGG I++K  ++        I ++PSGVQKER++PEDM+V   N   +               S C PLFM AY  R AGAVIH+H   + + T++ P   EF ITH EMIKGI+     GYY   D LVVPIIENT  E +L + +AKA++ YP +  VLVR HG+YVWG+ W  AK
Sbjct:   25 RNLIPELCRLFYGLGWVTGTGGGISLKHGNE--------IYIAPSGVQKERIQPEDMFVCDMNEQDISGPPAHKKLKK----SQCTPLFMNAYTMRGAGAVIHTHSKAAVMATLLYP-GNEFTITHQEMIKGIQKCSSGGYYRYDDTLVVPIIENTPEEKDLKERMAKAMEEYPDSCAVLVRRHGVYVWGETWEKAK 208          

HSP 2 Score: 24.6386 bits (52), Expect = 9.748e-43
Identity = 12/28 (42.86%), Postives = 14/28 (50.00%), Query Frame = 2
Query:  800 GRPLDQC*TSAECNPYLFDAANQPLQRG 883
            G   ++  T  EC  YLFD A Q  Q G
Sbjct:  201 GETWEKAKTMCECYDYLFDIAVQMKQHG 228          
BLAST of DY271437 vs. ExPASy Swiss-Prot
Match: APIP_XENTR (APAF1-interacting protein homolog OS=Xenopus tropicalis GN=apip PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.656e-42
Identity = 95/197 (48.22%), Postives = 120/197 (60.91%), Query Frame = 3
Query:  252 RVLISELCRHFYTLGWVSGTGGSITIKVHDDSIPKPQQLILMSPSGVQKERMEPEDMYVLSGNGTTLXXXXXXXXXXXXXXCSDCAPLFMKAYEKRDAGAVIHSHGIESCLVTMINPMSKEFRITHMEMIKGIK---GHGYY---DELVVPIIENTAYENELTDSLAKAIDAYPKATPVLVRNHGIYVWGDPWINAK 824
            R LI ELCR FY LGWV+GTGG I++K  D+        I ++PSGVQKER++P+D++V   +   +               S C PLFM AY  RDAGAVIH+H   + + T++ P  KEF ITH EMIKGIK     GYY   D L VPI+ENT  E +L + +A+A+  YP    VLVR HG+YVWGD W  AK
Sbjct:   22 RNLIPELCRQFYNLGWVTGTGGGISLKYGDE--------IYIAPSGVQKERIQPDDLFVCDIDEKDISSPPPYRNLKK----SQCTPLFMNAYTMRDAGAVIHTHSKAAVMATLMFP-GKEFLITHQEMIKGIKKGTSGGYYRYDDMLAVPIVENTPEEKDLKERMARAMTEYPDTCAVLVRRHGVYVWGDTWEKAK 205          

HSP 2 Score: 22.3274 bits (46), Expect = 1.656e-42
Identity = 10/20 (50.00%), Postives = 11/20 (55.00%), Query Frame = 2
Query:  824 TSAECNPYLFDAANQPLQRG 883
            T  EC  YLF+ A Q  Q G
Sbjct:  206 TMCECYDYLFEIAVQMKQHG 225          
BLAST of DY271437 vs. ExPASy Swiss-Prot
Match: APIP_MOUSE (APAF1-interacting protein OS=Mus musculus GN=Apip PE=1 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.849e-41
Identity = 94/197 (47.72%), Postives = 122/197 (61.93%), Query Frame = 3
Query:  252 RVLISELCRHFYTLGWVSGTGGSITIKVHDDSIPKPQQLILMSPSGVQKERMEPEDMYVLSGNGTTLXXXXXXXXXXXXXXCSDCAPLFMKAYEKRDAGAVIHSHGIESCLVTMINPMSKEFRITHMEMIKGIK---GHGYY---DELVVPIIENTAYENELTDSLAKAIDAYPKATPVLVRNHGIYVWGDPWINAK 824
            R LI ELC+ FY LGWV+GTGG I++K  ++        I ++PSGVQKER++PEDM+V   N   +               S C PLFM AY  R AGAVIH+H   + + T++ P  +EF+ITH EMIKGI+     GYY   D LVVPIIENT  E +L + +A A++ YP +  VLVR HG+YVWG+ W  AK
Sbjct:   24 RFLIPELCKQFYHLGWVTGTGGGISLKHGNE--------IYIAPSGVQKERIQPEDMFVCDINEQDISGPPASKKLKK----SQCTPLFMNAYTMRGAGAVIHTHSKAAVMATLLFP-GQEFKITHQEMIKGIRKCTSGGYYRYDDMLVVPIIENTPEEKDLKERMAHAMNEYPDSCAVLVRRHGVYVWGETWEKAK 207          
BLAST of DY271437 vs. ExPASy Swiss-Prot
Match: APIP_DANRE (APAF1-interacting protein homolog OS=Danio rerio GN=apip PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 3.044e-41
Identity = 94/200 (47.00%), Postives = 124/200 (62.00%), Query Frame = 3
Query:  243 KETRVLISELCRHFYTLGWVSGTGGSITIKVHDDSIPKPQQLILMSPSGVQKERMEPEDMYVLSGNGTTLXXXXXXXXXXXXXXCSDCAPLFMKAYEKRDAGAVIHSHGIESCLVTMINPMSKEFRITHMEMIKGI-KGHG-----YYDELVVPIIENTAYENELTDSLAKAIDAYPKATPVLVRNHGIYVWGDPWINAK 824
            ++ RVLI +LCR FY LGWV+GTGG I+++ H + I        ++PSGVQKER++PED++V   +   +               S C P FM AY  R A AVIH+H   + + T++ P  KEFRITH EMIKGI KG+      Y D LVVPIIENT  E +L + +A+A+D YP +  VLVR HG+YVWG+ W  AK
Sbjct:   21 EDPRVLIPQLCRLFYELGWVTGTGGGISLR-HGEHI-------YIAPSGVQKERIQPEDLFVCDIDEKDISCPPPQKKLKK----SQCTPPFMNAYTMRGAQAVIHTHSKSAVMATLLFP-GKEFRITHQEMIKGIRKGNSGTNFRYDDTLVVPIIENTPEEKDLKERMARAMDMYPDSCAVLVRRHGVYVWGETWEKAK 207          

HSP 2 Score: 24.2534 bits (51), Expect = 3.044e-41
Identity = 12/28 (42.86%), Postives = 14/28 (50.00%), Query Frame = 2
Query:  800 GRPLDQC*TSAECNPYLFDAANQPLQRG 883
            G   ++  T  EC  YLFD A Q  Q G
Sbjct:  200 GETWEKAKTMCECYDYLFDIAVQMKQSG 227          
BLAST of DY271437 vs. ExPASy Swiss-Prot
Match: YK95_SCHPO (Putative aldolase class 2 protein C20H4.05c OS=Schizosaccharomyces pombe GN=SPAC20H4.05c PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 9.521e-30
Identity = 79/203 (38.92%), Postives = 110/203 (54.19%), Query Frame = 3
Query:  240 VKETRVLISELCRHFYTLGWVSGTGGSITIKVHDDSIPKPQQLILMSPSGVQKERMEPEDMYVLSGNGTTLXXXXXXXXXXXXXXCSDCAPLFMKAYEK-RDAGAVIHSHGIESCLVTMINPMSKEFRITHMEMI----KGIKGHGYY---DELVVPIIENTAYENELTDSLAKAIDAYPKATPVLVRNHGIYVWGDPWINAK 824
            +K+   LI E+CR  YT GWV+GTG +I I                +PSGVQKERME   ++V+S     L               S C PLF+  Y   RDA A IH+H  E+ L++ +   S  F  T  E++    KG K +G++   D++ +P I NTA+E++L DSL +AI+ YP    V+VR+HGIY WGD W + K
Sbjct:   17 LKKCGELICEICRDLYTSGWVTGTGDAIVI----------------APSGVQKERMELHHLFVMS-----LITREYMRMPALRLKPSQCTPLFLAVYTSLRDAYACIHTHSQEAILLSTLFADSDHFSATGFEVLSYIPKGSKNNGFHKPTDKIKIPFINNTAHESDLHDSLQEAINLYPDTCAVIVRDHGIYCWGDTWQDTK 198          
BLAST of DY271437 vs. ExPASy Swiss-Prot
Match: YJZ4_YEAST (Putative aldolase class 2 protein YJR024C OS=Saccharomyces cerevisiae GN=YJR024C PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.375e-28
Identity = 75/201 (37.31%), Postives = 107/201 (53.23%), Query Frame = 3
Query:  258 LISELCRHFYTLGWVSGTGGSITIKVHDDSIPKPQQLILMSPSGVQKERMEPEDMYVLSGNGTTLXXXXXXXXXXXXXXCSDCAPLFMKAYEKRDAGAVIHSHGIESCLVTMINPMSKEFRITHMEMIKGIKGH------------GYYDELVVPIIENTAYENELTDSLAKAIDAYPKATPVLVRNHGIYVWGDPWINAK 824
            LI  LC+ F+   W +GTGG I+IK  + +         ++PSGVQKE+M PED++V+     TL               S C PLF+  Y+K++AGA+IH+H   + + +++     EFRI ++E IK I                ++D L +PIIEN A+E+EL D L K    YP    V+VR HGI+VWG     AK
Sbjct:   19 LICTLCKQFFHNNWCTGTGGGISIKDPNTNY------YYLAPSGVQKEKMIPEDLFVMDAQ--TLEYLRSPKLYKP----SACTPLFLACYQKKNAGAIIHTHSQNAVICSLL--FGDEFRIANIEQIKAIPSGKVDPVTKKPMALSFFDTLKIPIIENMAHEDELIDDLHKTFKDYPDTCAVIVRRHGIFVWGPTIDKAK 205          
BLAST of DY271437 vs. ExPASy Swiss-Prot
Match: MTNB_BACP2 (Methylthioribulose-1-phosphate dehydratase OS=Bacillus pumilus (strain SAFR-032) GN=mtnB PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 9.565e-14
Identity = 56/191 (29.32%), Postives = 90/191 (47.12%), Query Frame = 3
Query:  261 ISELCRHFYTLGWVSGTGGSITIKVHDDSIPKPQQLILMSPSGVQKERMEPEDMYVLSGNGTTLXXXXXXXXXXXXXXCSDCAPLFMKAYEKRDAGAVIHSHGIESCLVTMINPMSKEFRITHMEMIKGIKGHGYYDE---LVVPIIENTAYENELTDSLAKAIDAYPKATPVLVRNHGIYVWGDPWINAK 824
            ++++ R      W  GT G+++IKV DD I       L++ SG  K +   ED  +++  G  +               S    L    YE+ +AG  +H H I++ +++ +     E R    E+IK +   GY++E   + +PIIEN A+   L    AK +    ++  VL+RNHGI VWG     AK
Sbjct:   12 LADVKRELAQRDWFYGTSGNLSIKVSDDPIT-----FLVTASGKDKRKETDEDFVLVNAAGNPVDPDVPLRP-------SAETQLHTYVYERTNAGCCLHVHTIDNNVISELYGDKGEIRFKGNEIIKAL---GYWEEDAEVSLPIIENPAHIPHLAAQFAKHLTEESESGAVLIRNHGITVWGKTASEAK 187          
BLAST of DY271437 vs. ExPASy Swiss-Prot
Match: MTNB_PERMH (Methylthioribulose-1-phosphate dehydratase OS=Persephonella marina (strain DSM 14350 / EX-H1) GN=mtnB PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.855e-12
Identity = 50/189 (26.46%), Postives = 85/189 (44.97%), Query Frame = 3
Query:  258 LISELCRHFYTLGWVSGTGGSITIKVHDDSIPKPQQLILMSPSGVQKERMEPEDMYVLSGNGTTLXXXXXXXXXXXXXXCSDCAPLFMKAYEKRDAGAVIHSHGIESCLVTMINPMSKEFRITHMEMIKGIKGHGYYDELVVPIIENTAYENELTDSLAKAIDAYPKATPVLVRNHGIYVWGDPWINAK 824
            +++++    Y  GW   T G+++ K+HDD +        ++ SG  K  +  ED+  +  +   +               S    +  + Y++ DAG VIH H + +  ++ +        I  MEMIK +        + VPIIEN    + L +   K+I+  P+   +L+RNHGIY WG     AK
Sbjct:   16 ILNDIKVKLYNRGWFPATSGNLSYKLHDDPL-----YFAITSSGKDKGTVTHEDVIFVDKDAKPIEKTKLKP--------SAETKVHSQIYQRTDAGCVIHIHTVNNNFISQLYFEDGYVPIKDMEMIKALDIWKEDAFIKVPIIENFFDLDRLAEEAGKSIN--PEVPGLLIRNHGIYAWGRDEFEAK 189          
The following BLAST results are available for this feature:
BLAST of DY271437 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
APIP_XENLA5.742e-4348.22APAF1-interacting protein homolog OS=Xenopus laevi... [more]
APIP_HUMAN5.749e-4349.24APAF1-interacting protein OS=Homo sapiens GN=APIP ... [more]
APIP_CHICK9.748e-4348.73APAF1-interacting protein homolog OS=Gallus gallus... [more]
APIP_XENTR1.656e-4248.22APAF1-interacting protein homolog OS=Xenopus tropi... [more]
APIP_MOUSE1.849e-4147.72APAF1-interacting protein OS=Mus musculus GN=Apip ... [more]
APIP_DANRE3.044e-4147.00APAF1-interacting protein homolog OS=Danio rerio G... [more]
YK95_SCHPO9.521e-3038.92Putative aldolase class 2 protein C20H4.05c OS=Sch... [more]
YJZ4_YEAST1.375e-2837.31Putative aldolase class 2 protein YJR024C OS=Sacch... [more]
MTNB_BACP29.565e-1429.32Methylthioribulose-1-phosphate dehydratase OS=Baci... [more]
MTNB_PERMH6.855e-1226.46Methylthioribulose-1-phosphate dehydratase OS=Pers... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP9YP19FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271437 ID=DY271437; Name=DY271437; organism=Citrus clementina; type=EST; length=910bp
ACAGTTTCAGTCAAAAAAATCACCAGTGTCTCTTTTCTAACAAAAAGATA
TTTTTACAGAACAGAAACAGAATTAGATTCATCATCAATCACTTGCCATT
AGTAGTCATTACAATTGGAAAAGCTCTCAAAGAGAACAGCTTCCTATCAA
GAGCAAAGCAAATGGCAACGTTGGCAGTGAACGGAGGAGGAGGAGCAGCA
GCAGCAACGCATACGCAGGCTTATTTGGAGGGCAGAGCAGTGAAGGAGAC
GAGGGTGTTGATATCAGAGCTCTGCCGTCATTTCTACACCCTTGGATGGG
TTTCTGGGACAGGTGGCAGCATCACCATCAAGGTCCATGATGACTCCATC
CCTAAACCTCAACAGCTCATCCTCATGTCACCTTCTGGTGTGCAGAAGGA
GAGAATGGAACCAGAGGACATGTATGTGTTATCTGGAAATGGGACTACGT
TGTCTTCACCATCTCCAAAACCGTACCCACATAAGCCTCCCAAGTGTTCA
GATTGTGCTCCCCTTTTCATGAAGGCATACGAGAAACGTGATGCAGGGGC
TGTTATCCACAGCCATGGCATAGAATCTTGCCTTGTGACAATGATCAATC
CAATGTCAAAAGAATTTCGTATAACTCACATGGAGATGATAAAAGGAATC
AAAGGGCATGGTTACTATGATGAACTCGTTGTTCCCATTATAGAGAACAC
AGCTTATGAAAATGAGCTCACTGATTCTCTTGCTAAAGCGATAGATGCCT
ATCCAAAAGCAACACCTGTGCTTGTTCGTAATCATGGCATATATGTTTGG
GGAGACCCCTGGATCAATGCTAAACCTCGGCCGAATGTAACCCCTACCTC
TTTGATGCTGCCAACCAACCCCTCCAACGGGGCCCGGGATGGCCCCCCCC
AAACCTGGCC
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