DY271441

Overview
NameDY271441
Unique NameDY271441
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length975
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig501 contig Ccv1_Contig501:30..1004. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY271441 vs. ExPASy Swiss-Prot
Match: QCR8_SOLTU (Cytochrome b-c1 complex subunit 8 OS=Solanum tuberosum PE=1 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 3.626e-30
Identity = 60/72 (83.33%), Postives = 67/72 (93.06%), Query Frame = 3
Query:   33 MGKQPVRMKAVVYALSPFQQKIMPGLWKDLTGKIHHKVSDNWISTILLLGPLVGTYAYVQNYQEKEKLAHRY 248
            MGKQPV++KAVVYA+SPFQQKIMPGLWKDL GKIHHKVS+NWIS  LLLGPLVGTY+YVQ++ EKEKL HRY
Sbjct:    1 MGKQPVKLKAVVYAISPFQQKIMPGLWKDLPGKIHHKVSENWISATLLLGPLVGTYSYVQHFLEKEKLEHRY 72          
The following BLAST results are available for this feature:
BLAST of DY271441 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
QCR8_SOLTU3.626e-3083.33Cytochrome b-c1 complex subunit 8 OS=Solanum tuber... [more]
back to top
Properties
Property NameValue
Genbank descriptionKN0AAP9YP24FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271441 ID=DY271441; Name=DY271441; organism=Citrus clementina; type=EST; length=975bp
AACGAGAGATTTAGAGAGAGAAATCAAAAGACATGGGAAAGCAGCCGGTG
AGAATGAAGGCGGTGGTGTACGCACTGTCGCCATTTCAACAAAAGATTAT
GCCGGGGCTTTGGAAGGATCTGACCGGTAAGATCCATCACAAGGTCTCCG
ATAATTGGATCAGCACTATCCTTTTGCTCGGTCCTCTCGTCGGCACCTAC
GCGTATGTCCAAAATTACCAGGAGAAGGAGAAGTTGGCACACAGGTATTG
AAGCAAGCTGATGTGCCTCTATTTTTTCAGAAGCTTAAAGTTCTTGTGAA
TTAGCTACAACTCTTGTTGAAGTTGTGAAACATAATTGAAATTGCTAGGT
AGTTGATACTACAGGAGTTTGATTTGTGGGTTTTGTTGATGGACTGAGAA
GTATTGTCAAAATTCTGAGCAAGATTATCTCTTTCTATTAATGAAATAAA
TGTGATGGATGGAGTGCAGTATGAAGGTGGATTAAAAACCTATTTTTCGT
GGCAAAGAATAAGTTTGTCTTCAAAAGCAGTGACTACCGCATTATTTATA
CAAAAGAGGGCACCAACGAGTCAAAATAACAATCTCTTATTGGCAAACTT
CACTAAATCCAATTCTTAATGCTGATATATAAACCACGGAACTTTTTTTG
GGGGATGCGCAGAAACCTAGTGCAAAAAAAACCGCTGACTGGTCCAACGC
CAATATAAAAATATATTCCCCTTCACAAATCTTAAAATCGCATGAACCCT
CAGCGTAAACAGTATTCTCATTCTTTCATAGACCCATGTCCTTCTAACAC
TTCTGCCAGCTCGAACCTACATCTAAATACCGCAAAAAAATAACTCGGAG
AAATTAGTAAAACAAAAGAATAAAACCCCACGTCCCCTGCCTAACCACTC
GAACACACGACCCAATAAAAAACCTAGCACTCACACTCACACGGCTCAAC
AAATTCAAAACACATCTGACACCCA
back to top