Transferability, polymorphism and effectiveness for genetic mapping of the Pummelo (Citrus grandis Osbeck) EST-SSR markers

Publication Overview
TitleTransferability, polymorphism and effectiveness for genetic mapping of the Pummelo (Citrus grandis Osbeck) EST-SSR markers
AuthorsChai L, Biswas MK, Yi H, Guo W, Deng X
TypeJournal Article
Journal NameScientia horticulturae
Year2013
Page(s)85-91
CitationChai L, Biswas MK, Yi H, Guo W, Deng X. Transferability, polymorphism and effectiveness for genetic mapping of the Pummelo (Citrus grandis Osbeck) EST-SSR markers. Scientia horticulturae. 2013; 85-91.

Abstract

Pummelo (Citrus grandis Osbeck) is one of the ancestors of sweet orange and economically important cultivated species of the family Rutaceae. The availability of the EST SSR markers for Pummelo represents a promising source to increase the number of markers available for the citrus species. In this study, we evaluated 212 Pummelo EST derived SSR markers (CgEMS) for their transferability across the genera, polymorphism, mapping ability and utility for genetic diversity analysis. Among these markers, 136 were amplified bands, 99 were transferable across the genera. Transferability of CgEMS to C. sinensis, C. reticulata, C. lemon, Fortunella sp and Poncirus sp was 76%, 76%, 75%, 74% and 73%, respectively. In contrast 52 (53%) markers were found to be polymorphic and segregating in a mapping population. Segregating markers can be categorized into four groups: full informative (8%), male informative (15%), female informative (19%) and partly informative (59%). The phylogenetic relationship between the citrus and its relatives obtained with CgEMS was in a good agreement with the established citrus taxonomy and phylogeny. CgEMS could potentially serve as perfect markers for determining variation in phenotype, fingerprinting, mapping and genetic diversity study in C. grandis. Their high level of cross genera transferability of the CgEMS markers has allowed phylogenetic inference within the Rutaceae.
Features
This publication contains information about 48 features:
Feature NameUniquenameType
CgEMS-1CgEMS-1genetic_marker
CgEMS-10CgEMS-10genetic_marker
CgEMS-104CgEMS-104genetic_marker
CgEMS-107CgEMS-107genetic_marker
CgEMS-111CgEMS-111genetic_marker
CgEMS-112CgEMS-112genetic_marker
CgEMS-120CgEMS-120genetic_marker
CgEMS-122CgEMS-122genetic_marker
CgEMS-124CgEMS-124genetic_marker
CgEMS-125CgEMS-125genetic_marker
CgEMS-13CgEMS-13genetic_marker
CgEMS-130CgEMS-130genetic_marker
CgEMS-133CgEMS-133genetic_marker
CgEMS-137CgEMS-137genetic_marker
CgEMS-138CgEMS-138genetic_marker
CgEMS-139CgEMS-139genetic_marker
CgEMS-140CgEMS-140genetic_marker
CgEMS-141CgEMS-141genetic_marker
CgEMS-145CgEMS-145genetic_marker
CgEMS-150CgEMS-150genetic_marker
CgEMS-157CgEMS-157genetic_marker
CgEMS-164CgEMS-164genetic_marker
CgEMS-172CgEMS-172genetic_marker
CgEMS-2CgEMS-2genetic_marker
CgEMS-21CgEMS-21genetic_marker

Pages

Stocks
This publication contains information about 35 stocks:
Stock NameUniquenameType
Cara Cara Navel OrangeCara Cara Navel Orangeaccession
ChandlerChandleraccession
ClementineClementineaccession
Fenghuang pummeloFenghuang pummeloaccession
Fingered citronFingered citronaccession
Goutou sour orangeGoutou sour orangeaccession
Guanxi pummeloGuanxi pummeloaccession
Hirado buntanHirado buntanaccession
Hongju tangerineHongju tangerineaccession
Hongxin pummeloHongxin pummeloaccession
Huangjia grapefruitHuangjia grapefruitaccession
Hunannongjia pummeloHunannongjia pummeloaccession
Huoyansh pummeloHuoyansh pummeloaccession
Ichang papedaIchang papedaaccession
Jinshi pummeloJinshi pummeloaccession
Kaopan pummeloKaopan pummeloaccession
Liangping pummeloLiangping pummeloaccession
Majia pummeloMajia pummeloaccession
MexicanMexicanaccession
Rough LemonRough Lemonaccession
Shatian pummeloShatian pummeloaccession
StarRuby grapefruitStarRuby grapefruitaccession
Swingle citrumeloSwingle citrumeloaccession
Taiguo pummeloTaiguo pummeloaccession
Taiguowusuan pummeloTaiguowusuan pummeloaccession

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Properties
Additional details for this publication include:
Property NameValue
Publication TypeJournal Article
Publication Date2013
Published Location|||
Language Abbreng
Publication Model[electronic resource].
URLhttp://dx.doi.org/10.1016/j.scienta.2013.02.024
KeywordsCitrus maxima, Fortunella, Poncirus, chromosome mapping, expressed sequence tags, genetic polymorphism, genetic variation, lemons, microsatellite repeats, oranges, phenotype, phylogeny, pummelos, taxonomy