Citrus-C.sinensis-consensus-2018

Map Overview

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NameCitrus-C.sinensis-consensus-2018
SpeciesCitrus sinensis
Analysis methodKosambi
Map typegenetic
Population size170
Map unitcM
Population size170
Number of loci754
Number of QTL4
Number of linkage groups9
Publication[view all]
ContactFrederick Gmitter
Publication
YearPublications
2018Huang M, Roose ML, Yu Q, Du D, Yu Y, Zhang Y, Deng Z, Stover E, Gmitter FG. Construction of High-Density Genetic Maps and Detection of QTLs Associated With Huanglongbing Tolerance in Citrus.. Frontiers in plant science. 2018; 9:1694.
Map QTL
This map contains 4 QTL:
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Linkage GroupNameTypeStartStopPeak
Citrus-C.sinensis-consensus-2018.LG07qHLBFS.C.sinensis-consensus.LG7.2016QTL--43.9 cM
Citrus-C.sinensis-consensus-2018.LG07qHLBFS.C.sinensis-consensus.LG7.2015QTL--56.3 cM
Citrus-C.sinensis-consensus-2018.LG07qHLBFS.C.sinensis-consensus.LG7.2015.2QTL--67.1 cM
Citrus-C.sinensis-consensus-2018.LG07qHLBFS.C.sinensis-consensus.LG7.2016.2QTL--73.5 cM
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Contact
NameDetails
Frederick Gmitter
First name:Frederick
Last name:Gmitter
Title:Researcher
Institution:University of Florida
Address:Citrus Research and Education Center, University of Florida, Lake Alfred, FL 33850, USA
Country:USA
Email:fgmitter@ufl.edu
Last update:Nov 2018
Map Loci
This map contains 754 marker loci:
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Linkage GroupMarker NameLocus NameTypePosition
Citrus-C.sinensis-consensus-2018.LG022_113654242_11365424marker_locus23.35 cM
Citrus-C.sinensis-consensus-2018.LG022_117207572_11720757marker_locus25.02 cM
Citrus-C.sinensis-consensus-2018.LG022_120211622_12021162marker_locus25.66 cM
Citrus-C.sinensis-consensus-2018.LG022_119640812_11964081marker_locus26.12 cM
Citrus-C.sinensis-consensus-2018.LG022_122428362_12242836marker_locus26.25 cM
Citrus-C.sinensis-consensus-2018.LG022_138737842_13873784marker_locus27.27 cM
Citrus-C.sinensis-consensus-2018.LG022_129759662_12975966marker_locus27.94 cM
Citrus-C.sinensis-consensus-2018.LG022_132134902_13213490marker_locus28.28 cM
Citrus-C.sinensis-consensus-2018.LG022_131436322_13143632marker_locus28.81 cM
Citrus-C.sinensis-consensus-2018.LG022_135850552_13585055marker_locus28.89 cM
Citrus-C.sinensis-consensus-2018.LG022_140142942_14014294marker_locus29.3 cM
Citrus-C.sinensis-consensus-2018.LG022_136949152_13694915marker_locus29.67 cM
Citrus-C.sinensis-consensus-2018.LG022_146557562_14655756marker_locus30.18 cM
Citrus-C.sinensis-consensus-2018.LG022_144304042_14430404marker_locus30.59 cM
Citrus-C.sinensis-consensus-2018.LG022_142350262_14235026marker_locus30.69 cM
Citrus-C.sinensis-consensus-2018.LG022_151320342_15132034marker_locus31.14 cM
Citrus-C.sinensis-consensus-2018.LG022_154809042_15480904marker_locus31.28 cM
Citrus-C.sinensis-consensus-2018.LG022_153031132_15303113marker_locus31.44 cM
Citrus-C.sinensis-consensus-2018.LG022_164228702_16422870marker_locus32.04 cM
Citrus-C.sinensis-consensus-2018.LG022_158387752_15838775marker_locus32.3 cM
Citrus-C.sinensis-consensus-2018.LG022_184580562_18458056marker_locus32.36 cM
Citrus-C.sinensis-consensus-2018.LG022_168159562_16815956marker_locus32.57 cM
Citrus-C.sinensis-consensus-2018.LG022_204057812_20405781marker_locus33.08 cM
Citrus-C.sinensis-consensus-2018.LG022_203724352_20372435marker_locus33.22 cM
Citrus-C.sinensis-consensus-2018.LG022_210290542_21029054marker_locus33.34 cM
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Stock
NameTypeDetails
C. sinensis_x_P. trifoliata-F1population
Comments:mapping population
Population size:170
Pedigree:Sanford x Argentina;Succari x Flying Dragon;Flying Dragon x Succari
Description:data used for linkage map constuction based on SNP segregation between multiple intergeneric crosses (see pedigree)
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