Citrus-C.sinensis-consensus-2018

Map Overview

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NameCitrus-C.sinensis-consensus-2018
SpeciesCitrus sinensis
Analysis methodKosambi
Map typegenetic
Population size170
Map unitcM
Population size170
Number of loci754
Number of QTL4
Number of linkage groups9
Publication[view all]
ContactFrederick Gmitter
Publication
YearPublications
2018Huang M, Roose ML, Yu Q, Du D, Yu Y, Zhang Y, Deng Z, Stover E, Gmitter FG. Construction of High-Density Genetic Maps and Detection of QTLs Associated With Huanglongbing Tolerance in Citrus.. Frontiers in plant science. 2018; 9:1694.
Map QTL
This map contains 4 QTL:
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Linkage GroupNameTypeStartStopPeak
Citrus-C.sinensis-consensus-2018.LG07qHLBFS.C.sinensis-consensus.LG7.2016QTL--43.9 cM
Citrus-C.sinensis-consensus-2018.LG07qHLBFS.C.sinensis-consensus.LG7.2015QTL--56.3 cM
Citrus-C.sinensis-consensus-2018.LG07qHLBFS.C.sinensis-consensus.LG7.2015.2QTL--67.1 cM
Citrus-C.sinensis-consensus-2018.LG07qHLBFS.C.sinensis-consensus.LG7.2016.2QTL--73.5 cM
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Contact
NameDetails
Frederick Gmitter
First name:Frederick
Last name:Gmitter
Title:Researcher
Institution:University of Florida
Address:Citrus Research and Education Center, University of Florida, Lake Alfred, FL 33850, USA
Country:USA
Email:fgmitter@ufl.edu
Last update:Nov 2018
Map Loci
This map contains 754 marker loci:
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Linkage GroupMarker NameLocus NameTypePosition
Citrus-C.sinensis-consensus-2018.LG033_77361123_7736112marker_locus27.78 cM
Citrus-C.sinensis-consensus-2018.LG033_83161293_8316129marker_locus29.76 cM
Citrus-C.sinensis-consensus-2018.LG033_85910583_8591058marker_locus30.79 cM
Citrus-C.sinensis-consensus-2018.LG033_91058143_9105814marker_locus30.99 cM
Citrus-C.sinensis-consensus-2018.LG033_88585673_8858567marker_locus31.23 cM
Citrus-C.sinensis-consensus-2018.LG033_94139553_9413955marker_locus32.33 cM
Citrus-C.sinensis-consensus-2018.LG033_93132933_9313293marker_locus32.65 cM
Citrus-C.sinensis-consensus-2018.LG033_98527563_9852756marker_locus33.91 cM
Citrus-C.sinensis-consensus-2018.LG033_100261883_10026188marker_locus34.68 cM
Citrus-C.sinensis-consensus-2018.LG033_112510163_11251016marker_locus35.8 cM
Citrus-C.sinensis-consensus-2018.LG033_102406663_10240666marker_locus36.55 cM
Citrus-C.sinensis-consensus-2018.LG033_106047173_10604717marker_locus36.99 cM
Citrus-C.sinensis-consensus-2018.LG033_127071403_12707140marker_locus38.59 cM
Citrus-C.sinensis-consensus-2018.LG033_116353223_11635322marker_locus38.78 cM
Citrus-C.sinensis-consensus-2018.LG033_124152323_12415232marker_locus38.9 cM
Citrus-C.sinensis-consensus-2018.LG033_135850853_13585085marker_locus39.15 cM
Citrus-C.sinensis-consensus-2018.LG033_163581493_16358149marker_locus39.36 cM
Citrus-C.sinensis-consensus-2018.LG033_141240603_14124060marker_locus39.5 cM
Citrus-C.sinensis-consensus-2018.LG033_158039803_15803980marker_locus39.56 cM
Citrus-C.sinensis-consensus-2018.LG033_167330683_16733068marker_locus39.68 cM
Citrus-C.sinensis-consensus-2018.LG033_151720393_15172039marker_locus39.88 cM
Citrus-C.sinensis-consensus-2018.LG033_187283543_18728354marker_locus40.08 cM
Citrus-C.sinensis-consensus-2018.LG033_193155483_19315548marker_locus40.34 cM
Citrus-C.sinensis-consensus-2018.LG033_175121693_17512169marker_locus40.5 cM
Citrus-C.sinensis-consensus-2018.LG033_177521013_17752101marker_locus40.64 cM
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Stock
NameTypeDetails
C. sinensis_x_P. trifoliata-F1population
Description:data used for linkage map constuction based on SNP segregation between multiple intergeneric crosses (see pedigree)
Pedigree:Sanford x Argentina;Succari x Flying Dragon;Flying Dragon x Succari
Population size:170
Comments:mapping population
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