Citrus-C.sinensis-consensus-2018

Map Overview

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NameCitrus-C.sinensis-consensus-2018
SpeciesCitrus sinensis
Analysis methodKosambi
Map typegenetic
Population size170
Map unitcM
Population size170
Number of loci754
Number of QTL4
Number of linkage groups9
Publication[view all]
ContactFrederick Gmitter
Publication
YearPublications
2018Huang M, Roose ML, Yu Q, Du D, Yu Y, Zhang Y, Deng Z, Stover E, Gmitter FG. Construction of High-Density Genetic Maps and Detection of QTLs Associated With Huanglongbing Tolerance in Citrus.. Frontiers in plant science. 2018; 9:1694.
Map QTL
This map contains 4 QTL:
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Linkage GroupNameTypeStartStopPeak
Citrus-C.sinensis-consensus-2018.LG07qHLBFS.C.sinensis-consensus.LG7.2016QTL--43.9 cM
Citrus-C.sinensis-consensus-2018.LG07qHLBFS.C.sinensis-consensus.LG7.2015QTL--56.3 cM
Citrus-C.sinensis-consensus-2018.LG07qHLBFS.C.sinensis-consensus.LG7.2015.2QTL--67.1 cM
Citrus-C.sinensis-consensus-2018.LG07qHLBFS.C.sinensis-consensus.LG7.2016.2QTL--73.5 cM
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Contact
NameDetails
Frederick Gmitter
First name:Frederick
Last name:Gmitter
Title:Researcher
Institution:University of Florida
Address:Citrus Research and Education Center, University of Florida, Lake Alfred, FL 33850, USA
Country:USA
Email:fgmitter@ufl.edu
Last update:Nov 2018
Map Loci
This map contains 754 marker loci:
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Linkage GroupMarker NameLocus NameTypePosition
Citrus-C.sinensis-consensus-2018.LG033_189301273_18930127marker_locus40.89 cM
Citrus-C.sinensis-consensus-2018.LG033_293831003_29383100marker_locus41.16 cM
Citrus-C.sinensis-consensus-2018.LG033_321168883_32116888marker_locus41.3 cM
Citrus-C.sinensis-consensus-2018.LG033_291752113_29175211marker_locus41.46 cM
Citrus-C.sinensis-consensus-2018.LG033_313096963_31309696marker_locus41.65 cM
Citrus-C.sinensis-consensus-2018.LG033_336824303_33682430marker_locus41.93 cM
Citrus-C.sinensis-consensus-2018.LG033_333545323_33354532marker_locus41.96 cM
Citrus-C.sinensis-consensus-2018.LG033_331557883_33155788marker_locus42.52 cM
Citrus-C.sinensis-consensus-2018.LG033_207434393_20743439marker_locus43.99 cM
Citrus-C.sinensis-consensus-2018.LG033_233817603_23381760marker_locus45.22 cM
Citrus-C.sinensis-consensus-2018.LG033_237670283_23767028marker_locus45.37 cM
Citrus-C.sinensis-consensus-2018.LG033_218873453_21887345marker_locus45.54 cM
Citrus-C.sinensis-consensus-2018.LG033_283630573_28363057marker_locus47.13 cM
Citrus-C.sinensis-consensus-2018.LG033_280382013_28038201marker_locus47.57 cM
Citrus-C.sinensis-consensus-2018.LG033_272745383_27274538marker_locus48.09 cM
Citrus-C.sinensis-consensus-2018.LG033_271837323_27183732marker_locus48.71 cM
Citrus-C.sinensis-consensus-2018.LG033_359819073_35981907marker_locus49.15 cM
Citrus-C.sinensis-consensus-2018.LG033_362817203_36281720marker_locus50.18 cM
Citrus-C.sinensis-consensus-2018.LG033_367935693_36793569marker_locus51.27 cM
Citrus-C.sinensis-consensus-2018.LG033_378467553_37846755marker_locus51.62 cM
Citrus-C.sinensis-consensus-2018.LG033_369603913_36960391marker_locus52.07 cM
Citrus-C.sinensis-consensus-2018.LG033_380823483_38082348marker_locus52.46 cM
Citrus-C.sinensis-consensus-2018.LG033_383452623_38345262marker_locus52.99 cM
Citrus-C.sinensis-consensus-2018.LG033_386108723_38610872marker_locus53.29 cM
Citrus-C.sinensis-consensus-2018.LG033_394075953_39407595marker_locus53.72 cM
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Stock
NameTypeDetails
C. sinensis_x_P. trifoliata-F1population
Comments:mapping population
Population size:170
Pedigree:Sanford x Argentina;Succari x Flying Dragon;Flying Dragon x Succari
Description:data used for linkage map constuction based on SNP segregation between multiple intergeneric crosses (see pedigree)
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