Citrus-P.trifoliata-consensus-2018

Map Overview

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NameCitrus-P.trifoliata-consensus-2018
SpeciesPoncirus trifoliata
Analysis methodKosambi
Map typegenetic
Population size170
Map unitcM
Population size170
Number of loci647
Number of QTL14
Number of linkage groups9
Publication[view all]
ContactFrederick Gmitter
Publication
YearPublications
2018Huang M, Roose ML, Yu Q, Du D, Yu Y, Zhang Y, Deng Z, Stover E, Gmitter FG. Construction of High-Density Genetic Maps and Detection of QTLs Associated With Huanglongbing Tolerance in Citrus.. Frontiers in plant science. 2018; 9:1694.
Map QTL
This map contains 14 QTL:
Linkage GroupNameTypeStartStopPeak
Citrus-P.trifoliata-consensus-2018.LG06qHLBCD.P.trifoliata-consensus.LG6.2016QTL--27.9 cM
Citrus-P.trifoliata-consensus-2018.LG06qHLBCD.P.trifoliata-consensus.LG6.2015QTL--43.4 cM
Citrus-P.trifoliata-consensus-2018.LG06qHLBFS.P.trifoliata-consensus.LG6.2015QTL--43.8 cM
Citrus-P.trifoliata-consensus-2018.LG06qHLBFS.P.trifoliata-consensus.LG6.2016QTL--47.8 cM
Citrus-P.trifoliata-consensus-2018.LG06qHLBFS.P.trifoliata-consensus.LG6.2015.2QTL--55.4 cM
Citrus-P.trifoliata-consensus-2018.LG07qHLBCD.P.trifoliata-consensus.LG7.2016QTL--35 cM
Citrus-P.trifoliata-consensus-2018.LG08qHLBFS.P.trifoliata-consensus.LG8.2015QTL--39.5 cM
Citrus-P.trifoliata-consensus-2018.LG08qHLBCD.P.trifoliata-consensus.LG8.2015QTL--50.2 cM
Citrus-P.trifoliata-consensus-2018.LG08qHLBFS.P.trifoliata-consensus.LG8.2015.2QTL--54.9 cM
Citrus-P.trifoliata-consensus-2018.LG08qHLBFS.P.trifoliata-consensus.LG8.2016QTL--55.6 cM
Citrus-P.trifoliata-consensus-2018.LG09qHLBCD.P.trifoliata-consensus.LG9.2015QTL--59.5 cM
Citrus-P.trifoliata-consensus-2018.LG09qHLBFS.P.trifoliata-consensus.LG9.2015QTL--66 cM
Citrus-P.trifoliata-consensus-2018.LG09qHLBFS.P.trifoliata-consensus.LG9.2015.2QTL--83.9 cM
Citrus-P.trifoliata-consensus-2018.LG09qHLBFS.P.trifoliata-consensus.LG9.2016QTL--83.9 cM
Contact
NameDetails
Frederick Gmitter
First name:Frederick
Last name:Gmitter
Title:Researcher
Institution:University of Florida
Address:Citrus Research and Education Center, University of Florida, Lake Alfred, FL 33850, USA
Country:USA
Email:fgmitter@ufl.edu
Last update:Nov 2018
Map Loci
This map contains 647 features:
Linkage GroupMarker NameLocus NameTypePosition
Citrus-P.trifoliata-consensus-2018.LG011_2010581_201058marker_locus0 cM
Citrus-P.trifoliata-consensus-2018.LG011_2010571_201057marker_locus1.55 cM
Citrus-P.trifoliata-consensus-2018.LG011_7099861_709986marker_locus6.09 cM
Citrus-P.trifoliata-consensus-2018.LG011_10900261_1090026marker_locus7.86 cM
Citrus-P.trifoliata-consensus-2018.LG011_12299121_1229912marker_locus8.51 cM
Citrus-P.trifoliata-consensus-2018.LG011_14004701_1400470marker_locus9.02 cM
Citrus-P.trifoliata-consensus-2018.LG011_8404041_840404marker_locus10.43 cM
Citrus-P.trifoliata-consensus-2018.LG011_16504801_1650480marker_locus12.88 cM
Citrus-P.trifoliata-consensus-2018.LG011_19745601_1974560marker_locus17.32 cM
Citrus-P.trifoliata-consensus-2018.LG011_25981521_2598152marker_locus20.29 cM
Citrus-P.trifoliata-consensus-2018.LG011_26004691_2600469marker_locus21.73 cM
Citrus-P.trifoliata-consensus-2018.LG011_29908711_2990871marker_locus26.07 cM
Citrus-P.trifoliata-consensus-2018.LG011_36184691_3618469marker_locus29.34 cM
Citrus-P.trifoliata-consensus-2018.LG011_41258191_4125819marker_locus32.1 cM
Citrus-P.trifoliata-consensus-2018.LG011_43181641_4318164marker_locus33.49 cM
Citrus-P.trifoliata-consensus-2018.LG011_49282051_4928205marker_locus35.75 cM
Citrus-P.trifoliata-consensus-2018.LG011_54741051_5474105marker_locus38.1 cM
Citrus-P.trifoliata-consensus-2018.LG011_56873231_5687323marker_locus39.38 cM
Citrus-P.trifoliata-consensus-2018.LG011_52399361_5239936marker_locus40.26 cM
Citrus-P.trifoliata-consensus-2018.LG011_62113521_6211352marker_locus41.17 cM
Citrus-P.trifoliata-consensus-2018.LG011_50677051_5067705marker_locus42.2 cM
Citrus-P.trifoliata-consensus-2018.LG011_64155311_6415531marker_locus43.92 cM
Citrus-P.trifoliata-consensus-2018.LG011_86717361_8671736marker_locus45.39 cM
Citrus-P.trifoliata-consensus-2018.LG011_80489371_8048937marker_locus46.72 cM
Citrus-P.trifoliata-consensus-2018.LG011_77943351_7794335marker_locus47.1 cM
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Stock
NameTypeDetails
C. sinensis_x_P. trifoliata-F1population
Comments:mapping population
Population size:170
Pedigree:Sanford x Argentina;Succari x Flying Dragon;Flying Dragon x Succari
Description:data used for linkage map constuction based on SNP segregation between multiple intergeneric crosses (see pedigree)
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