Construction of genetic linkage maps of ‘Fina Sodea’ clementine (Citrus clementina) and Byungkyul (C. platymamma), a Korean landrace, based on RAPD and SSR markers

Publication Overview
TitleConstruction of genetic linkage maps of ‘Fina Sodea’ clementine (Citrus clementina) and Byungkyul (C. platymamma), a Korean landrace, based on RAPD and SSR markers
AuthorsChang Y, Kim H, Oh E, Yi K, Song K
TypeJournal Article
Journal NameHorticulture, environment and biotechnology
Volume59
Issue2
Year2018
Page(s)263-274
CitationChang Y, Kim H, Oh E, Yi K, Song K. Construction of genetic linkage maps of ‘Fina Sodea’ clementine (Citrus clementina) and Byungkyul (C. platymamma), a Korean landrace, based on RAPD and SSR markers. Horticulture, environment and biotechnology. 2018; 59(2):263-274.

Abstract

In this study, genetic linkage maps were constructed for ‘Fina Sodea’ clementine (Citrus clementina) and Byungkyul (C. platymamma) using 152 F₁ clones as a mapping population. Reference-guided whole-genome sequencing, using next-generation sequencing technology, along with 82 randomly amplified polymorphic DNA markers and seven genomic simple-sequence repeat (gSSR) loci, mined 41 polymorphic gSSR loci from the direct comparative analysis. The generated linkage map for ‘Fina Sodea’ clementine contained 22 markers distributed into 10 linkage groups, with a total length of 417.7 cM and an average interval of 19.0 cM. The map for Byungkyul contained 57 markers distributed into 10 linkage groups, with a total length of 684.9 cM and a smaller average interval of 12.0 cM. Comparison of shared gSSR markers between the two maps identified collinearities, such as linkage groups B3 and C7 and groups B9 and C7. The newly developed gSSR markers greatly enrich the limited amount of gSSR markers in Citrus, providing markers that can be useful for comparative mapping and other genetic studies.
Features
This publication contains information about 81 features:
Feature NameUniquenameType
OPAP10OPAP10genetic_marker
OPD14OPD14genetic_marker
OPH06OPH06genetic_marker
OPH12OPH12genetic_marker
OPH13OPH13genetic_marker
OPI04OPI04genetic_marker
OPJ02OPJ02genetic_marker
OPJ04OPJ04genetic_marker
OPJ07OPJ07genetic_marker
OPJ09OPJ09genetic_marker
OPl04OPl04genetic_marker
OPL05OPL05genetic_marker
OPM03OPM03genetic_marker
OPO02OPO02genetic_marker
OPO06OPO06genetic_marker
OPO12OPO12genetic_marker
OPO20OPO20genetic_marker
OPP06OPP06genetic_marker
OPR09OPR09genetic_marker
OPT08OPT08genetic_marker
OPV14OPV14genetic_marker
OPY10OPY10genetic_marker
OPZ19OPZ19genetic_marker
OPAI17OPAI17genetic_marker
OPAP03OPAP03genetic_marker

Pages

Featuremaps
This publication contains information about 2 maps:
Map Name
Citrus-Fina_Sodea/Byungkyool-F1-Byungkyool
Citrus-Fina_Sodea/Byungkyool-F1-Fina_Sodea
Stocks
This publication contains information about 1 stocks:
Stock NameUniquenameType
Fina_Sodea/Byungkyool-F1Fina_Sodea/Byungkyool-F1population
Properties
Additional details for this publication include:
Property NameValue
Publication TypeJournal Article
Publication Date2018
Language Abbreng
URLhttps://dx.doi.org/10.1007/s13580-018-0021-3
KeywordsCitrus clementina, chromosome mapping, clementines, clones, genetic markers, genomics, high-throughput nucleotide sequencing, landraces, linkage groups, loci, microsatellite repeats, random amplified polymorphic DNA technique