Citrus-C_sunki/Rubidoux-F1-Rubidoux-2020

Map Overview


Name	Citrus-C_sunki/Rubidoux-F1-Rubidoux-2020
Species	Citrus spp.
Map type	genetic
Population type	F1
Population size	272
Map unit	cM
Maternal parent	Citrus sunki
Paternal parent	Rubidoux
Number of loci	568
Number of QTL	34
Number of linkage groups	12
Publication	[view all]
Contact	Maiara Curtolo

Stock

Name

Type

Details

C_sunki/Rubidoux-F1-2020

population

Contact

Name

Details

Maiara Curtolo

First name:	Maiara
Last name:	Curtolo
Institution:	Centro APTA Citros Sylvio Moreira
Email:	maiaramc@hotmail.com
Last update:	Jan 2020

Publication


Year	Publications
2020	Curtolo M, Granato LM, Soratto TAT, Curtolo M, Gazaffi R, Takita MA, Cristofani-Yaly M, Machado MA. Expression Quantitative Trait Loci (eQTL) mapping for callose synthases in intergeneric hybrids of Citrus challenged with the bacteria Candidatus Liberibacter asiaticus.. Genetics and molecular biology. 2020; 43(2):e20190133.

Map Loci

This map contains 568 marker loci:

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Linkage Group	Marker Name	Locus Name	Type	Position
Citrus-C_sunki/Rubidoux-F1-Rubidoux-2020.LG01-2	100037092\|F\|0	100037092\|F\|0_33_A>G	marker_locus	83.13 cM
Citrus-C_sunki/Rubidoux-F1-Rubidoux-2020.LG01-2	100029401\|F\|0	100029401\|F\|0_41_C>T	marker_locus	89.92 cM
Citrus-C_sunki/Rubidoux-F1-Rubidoux-2020.LG01-2	100039003\|F\|0	100039003\|F\|0_37_C>G	marker_locus	98.07 cM
Citrus-C_sunki/Rubidoux-F1-Rubidoux-2020.LG01-2	100040345\|F\|0	100040345\|F\|0_44_A>G	marker_locus	110.75 cM
Citrus-C_sunki/Rubidoux-F1-Rubidoux-2020.LG01-2	100033233\|F\|0	100033233\|F\|0_22_C>A	marker_locus	116.69 cM
Citrus-C_sunki/Rubidoux-F1-Rubidoux-2020.LG01-2	100020031\|F\|0	100020031\|F\|0_61_T>C	marker_locus	120.05 cM
Citrus-C_sunki/Rubidoux-F1-Rubidoux-2020.LG01-2	100001837\|F\|0	100001837\|F\|0_44_A>G	marker_locus	129.88 cM
Citrus-C_sunki/Rubidoux-F1-Rubidoux-2020.LG01-2	100008657\|F\|0	100008657\|F\|0_43_A>G	marker_locus	142.86 cM
Citrus-C_sunki/Rubidoux-F1-Rubidoux-2020.LG01-2	100090854\|F\|0	100090854\|F\|0_57_C>G	marker_locus	157.8 cM
Citrus-C_sunki/Rubidoux-F1-Rubidoux-2020.LG01-2	100000751\|F\|0	100000751\|F\|0_28_C>T	marker_locus	174.91 cM
Citrus-C_sunki/Rubidoux-F1-Rubidoux-2020.LG01-2	100030452\|F\|0	100030452\|F\|0_31_T>C	marker_locus	185.6 cM
Citrus-C_sunki/Rubidoux-F1-Rubidoux-2020.LG01-2	100037984\|F\|0	100037984\|F\|0_63_G>A	marker_locus	190.34 cM
Citrus-C_sunki/Rubidoux-F1-Rubidoux-2020.LG01-2	100007776\|F\|0	100007776\|F\|0_24_T>C	marker_locus	195.61 cM
Citrus-C_sunki/Rubidoux-F1-Rubidoux-2020.LG01-2	100023307\|F\|0	100023307\|F\|0_43_G>A	marker_locus	199.08 cM
Citrus-C_sunki/Rubidoux-F1-Rubidoux-2020.LG01-2	100020496\|F\|0	100020496\|F\|0_24_A>T	marker_locus	201.24 cM
Citrus-C_sunki/Rubidoux-F1-Rubidoux-2020.LG01-2	100024676\|F\|0	100024676\|F\|0_28_G>A	marker_locus	203.97 cM
Citrus-C_sunki/Rubidoux-F1-Rubidoux-2020.LG01-2	100012028\|F\|0	100012028\|F\|0_15_T>G	marker_locus	206.7 cM
Citrus-C_sunki/Rubidoux-F1-Rubidoux-2020.LG01-2	100011232\|F\|0	100011232\|F\|0_8_A>C	marker_locus	213.63 cM
Citrus-C_sunki/Rubidoux-F1-Rubidoux-2020.LG01-2	100044379\|F\|0	100044379\|F\|0_25_A>G	marker_locus	220.06 cM
Citrus-C_sunki/Rubidoux-F1-Rubidoux-2020.LG01-2	100018035\|F\|0	100018035\|F\|0_57_A>G	marker_locus	224.02 cM
Citrus-C_sunki/Rubidoux-F1-Rubidoux-2020.LG01-2	100064889\|F\|0	100064889\|F\|0_27_C>T	marker_locus	226.96 cM
Citrus-C_sunki/Rubidoux-F1-Rubidoux-2020.LG01-2	100030314\|F\|0	100030314\|F\|0_27_A>G	marker_locus	229.58 cM
Citrus-C_sunki/Rubidoux-F1-Rubidoux-2020.LG01-2	100020423\|F\|0	100020423\|F\|0_35_C>T	marker_locus	232.01 cM
Citrus-C_sunki/Rubidoux-F1-Rubidoux-2020.LG01-2	100003141\|F\|0	100003141\|F\|0_37_T>C	marker_locus	238.78 cM
Citrus-C_sunki/Rubidoux-F1-Rubidoux-2020.LG02	100161379\|F\|0	100161379\|F\|0_50_A>G	marker_locus	0 cM

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Map QTL

This map contains 34 QTL:

Download Table


Linkage Group	Name	Type	Start	Stop	Peak
Citrus-C_sunki/Rubidoux-F1-Rubidoux-2020.LG07	qHCSE.C_sunki/Rubidoux.LG07.R.CscalS2	QTL	-	-	375.76 cM
Citrus-C_sunki/Rubidoux-F1-Rubidoux-2020.LG08	qHCSE.C_sunki/Rubidoux.LG08.R.CscalS8	QTL	-	-	27.94 cM
Citrus-C_sunki/Rubidoux-F1-Rubidoux-2020.LG08	qHCSE.C_sunki/Rubidoux.LG08.R.CscalS7	QTL	-	-	110.29 cM
Citrus-C_sunki/Rubidoux-F1-Rubidoux-2020.LG08	qHCSE.C_sunki/Rubidoux.LG08.R.CscalS12	QTL	-	-	282.42 cM
Citrus-C_sunki/Rubidoux-F1-Rubidoux-2020.LG08	qHCSE.C_sunki/Rubidoux.LG08.R.CscalS2	QTL	-	-	284 cM
Citrus-C_sunki/Rubidoux-F1-Rubidoux-2020.LG09	qHCSE.C_sunki/Rubidoux.LG09.R.CscalS5	QTL	-	-	5.1 cM
Citrus-C_sunki/Rubidoux-F1-Rubidoux-2020.LG09	qHCSE.C_sunki/Rubidoux.LG09.R.CscalS5.2	QTL	-	-	136.41 cM
Citrus-C_sunki/Rubidoux-F1-Rubidoux-2020.LG09	qHCSE.C_sunki/Rubidoux.LG09.R.CscalS2	QTL	-	-	327.91 cM
Citrus-C_sunki/Rubidoux-F1-Rubidoux-2020.LG09	qHCSE.C_sunki/Rubidoux.LG09.R.CscalS7	QTL	-	-	342 cM

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