EG026550

Overview
NameEG026550
Unique NameEG026550
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length617
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EG026550_ssr108 microsatellite EG026550_ssr108:108..119. BLAST: Citrus ESTs to Prunus persica proteins V1
EG026550_ssr456 microsatellite EG026550_ssr456:456..467. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig6154 contig Ccv1_Contig6154:786..1402. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of EG026550 vs. ExPASy Swiss-Prot
Match: BH066_ARATH (Transcription factor bHLH66 OS=Arabidopsis thaliana GN=BHLH66 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 5.745e-15
Identity = 50/104 (48.08%), Postives = 63/104 (60.58%), Query Frame = 1 
Query:    1 AMQYLQGKGLCLMPISLATAISTATCHSRNPIISTSXXXXXXXXXXXXXLLQSNGEGPTSPSMSVLTVQSAT----MGNGGADG----------SVKDAASVSK 270
            AMQYLQGKGLCLMPISLATAISTATCHSRNP+I  +                ++  GP+ P++S +T+QS +     GNG  +G          +VK+A SVSK
Sbjct:  261 AMQYLQGKGLCLMPISLATAISTATCHSRNPLIPGAV---------------ADVGGPSPPNLSGMTIQSTSTKMGSGNGKLNGNGVTERSSSIAVKEAVSVSK 349
[Close]
BLAST of EG026550 vs. ExPASy Swiss-Prot
Match: BH069_ARATH (Transcription factor bHLH69 OS=Arabidopsis thaliana GN=BHLH69 PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 5.377e-13
Identity = 45/91 (49.45%), Postives = 53/91 (58.24%), Query Frame = 1 
Query:    1 AMQYLQGKGLCLMPISLATAISTATCHSRNPIISTSXXXXXXXXXXXXXLLQSNGEGPTSPSMSVLTVQSATMGNGGADGSVKDAASVSKP 273
            AMQYLQGKGLCLMPISLAT ISTATC SR+P +  +                     P SP++S   V +   GNG +  +VKDA SVSKP
Sbjct:  242 AMQYLQGKGLCLMPISLATTISTATCPSRSPFVKDTGV-------------------PLSPNLSTTIVAN---GNGSSLVTVKDAPSVSKP 310
The following BLAST results are available for this feature:
BLAST of EG026550 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
BH066_ARATH5.745e-1548.08Transcription factor bHLH66 OS=Arabidopsis thalian... [more]
BH069_ARATH5.377e-1349.45Transcription factor bHLH69 OS=Arabidopsis thalian... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAB2BD05ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EG026550 ID=EG026550; Name=EG026550; organism=Citrus clementina; type=EST; length=617bp
GCCATGCAGTACTTACAAGGCAAAGGGCTTTGTCTAATGCCCATCTCACT
TGCAACTGCTATATCGACTGCCACGTGTCACTCTAGGAACCCCATCATCA
GCACCAGCAACAACAACAATAACAACGGCAATCCCCACCACAATCCTTTG
CTTCAGTCCAATGGTGAGGGCCCGACCTCACCTAGCATGTCAGTGCTGAC
TGTCCAGTCAGCAACTATGGGTAACGGTGGGGCTGACGGCTCCGTCAAAG
ATGCTGCTTCCGTTTCCAAGCCTTGATCAACGGCGTCGGCCGACTTTATG
ATGAGGCTCGTCCAAAGTCTACGAAAATAAGGCGTCACTAGATGTTGGGA
CCTTCACGACGTCGTATTTGTGTAGACTTTGTGACTGACTGAATCTAACA
AACAACAAAAAAGCAAGAAAGAAGCCAATCCCAAGAACAAAAACCTTATT
TTATGTTATTATTATTATTTTAATTTGCGGGTTAGGTTTTGTTAATTTTA
CCATTATTAAAATTTTAATTTCTCAGATGGGATATCTCCCTCTTTTTCTT
TTATTTAATATTCTCTGTCATGATTCTCTATTAAATAATTATTTATAAAA
GCCTTTAATAATTAGAC
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