EG026621

Overview
NameEG026621
Unique NameEG026621
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length558
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4062 contig Ccv1_Contig4062:537..1094. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EG026621 vs. ExPASy Swiss-Prot
Match: CHI2_PEA (Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=2)

HSP 1 Score: 187.578 bits (475), Expect = 3.544e-47
Identity = 83/130 (63.85%), Postives = 103/130 (79.23%), Query Frame = 3
Query:    3 NCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPYGLNLMAQSM 392
            N NY +CG A+GVDLLNNPDL+ATDPV+SFK+A+WFWMT Q PKPSCH+VI   W PS+ +  AGRLPGYG  TNIINGG+ECG+G +  V++RIGF+  +C  FGI  GDNLDCY+QRP+G +L   S+
Sbjct:  187 NYNYGQCGRAIGVDLLNNPDLVATDPVISFKTALWFWMTPQSPKPSCHDVITGGWTPSSADRAAGRLPGYGTVTNIINGGLECGRGQDSRVQDRIGFYKRYCDIFGIGYGDNLDCYSQRPFGSSLPLSSI 316          
BLAST of EG026621 vs. ExPASy Swiss-Prot
Match: CHI2_TOBAC (Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 7.895e-47
Identity = 81/130 (62.31%), Postives = 102/130 (78.46%), Query Frame = 3
Query:    3 NCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPYGLNLMAQSM 392
            N NY  CG A+GVDLLNNPDL+ATDPV+SFKSA+WFWMT Q PKPSCH+VII  W+PS+ +  A RLPG+G+ TNIINGG+ECG+G +  V++RIGF+  +C   G+ PGDNLDC NQR +G  L+  +M
Sbjct:  195 NYNYGPCGRAIGVDLLNNPDLVATDPVISFKSALWFWMTPQSPKPSCHDVIIGRWQPSSADRAANRLPGFGVITNIINGGLECGRGTDSRVQDRIGFYRRYCSILGVSPGDNLDCGNQRSFGNGLLVDTM 324          
BLAST of EG026621 vs. ExPASy Swiss-Prot
Match: CHI1_TOBAC (Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1 SV=2)

HSP 1 Score: 186.422 bits (472), Expect = 7.895e-47
Identity = 82/130 (63.08%), Postives = 102/130 (78.46%), Query Frame = 3
Query:    3 NCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPYGLNLMAQSM 392
            N NY  CG A+GVDLLNNPDL+ATDPV+SFKSA+WFWMT Q PKPSCH+VII  W+PSA +  A RLPG+G+ TNIINGG+ECG+G +  V++RIGF+  +C   G+ PGDNLDC NQR +G  L+  +M
Sbjct:  200 NYNYGPCGRAIGVDLLNNPDLVATDPVISFKSALWFWMTPQSPKPSCHDVIIGRWQPSAGDRAANRLPGFGVITNIINGGLECGRGTDSRVQDRIGFYRRYCSILGVSPGDNLDCGNQRSFGNGLLVDTM 329          
BLAST of EG026621 vs. ExPASy Swiss-Prot
Match: CHI1_SOLTU (Endochitinase 1 (Fragment) OS=Solanum tuberosum GN=CHTB1 PE=2 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 1.759e-46
Identity = 80/130 (61.54%), Postives = 100/130 (76.92%), Query Frame = 3
Query:    3 NCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPYGLNLMAQSM 392
            N NY  CG A+GVDLLNNPDL+ATD V+SFKSAIWFWMT Q PKPSCH+VI   W+PS ++  A R+PG+G+ TNIINGG+ECG G +  V++RIGF+  +CG  G+ PGDNLDC NQR +G  L+  +M
Sbjct:  189 NYNYGPCGRAIGVDLLNNPDLVATDSVISFKSAIWFWMTPQSPKPSCHDVITGRWQPSGVDQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGDNLDCGNQRSFGNGLLVDTM 318          
BLAST of EG026621 vs. ExPASy Swiss-Prot
Match: CHIC_SOLLC (Basic 30 kDa endochitinase OS=Solanum lycopersicum GN=CHI9 PE=1 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 3.918e-46
Identity = 80/130 (61.54%), Postives = 99/130 (76.15%), Query Frame = 3
Query:    3 NCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPYGLNLMAQSM 392
            N NY  CG A+GVDLLNNPDL+ATDPV+SFKSAIWFWMT Q PKPSCH+VI   W+PS  +  A R+PG+G+ TNIINGG+ECG G +  V++RIGF+  +CG  G+ PG+NLDC NQR +G  L+   M
Sbjct:  193 NYNYGPCGRAIGVDLLNNPDLVATDPVISFKSAIWFWMTPQSPKPSCHDVITGRWQPSGADQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGENLDCGNQRSFGNGLLVDIM 322          
BLAST of EG026621 vs. ExPASy Swiss-Prot
Match: CHI1_THECC (Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 3.918e-46
Identity = 83/130 (63.85%), Postives = 96/130 (73.85%), Query Frame = 3
Query:    3 NCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPYGLNLMAQSM 392
            N NY +CG A+GVDLLNNPDLLATDP +SFKSA WFWMT Q PKPSCH+VII  W PS  +  AGR+PG+GL TNIINGG+ECGQG N  V +RIGF+  +C   G+  G+NLDCYNQR Y       SM
Sbjct:  192 NYNYGQCGRAIGVDLLNNPDLLATDPTISFKSAFWFWMTPQSPKPSCHDVIIGAWSPSGSDQAAGRVPGFGLITNIINGGLECGQGWNAKVEDRIGFYKRYCDTLGVGYGNNLDCYNQRSYNNGPSVDSM 321          
BLAST of EG026621 vs. ExPASy Swiss-Prot
Match: CHIT_SOLTU (Endochitinase OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.140e-45
Identity = 79/130 (60.77%), Postives = 102/130 (78.46%), Query Frame = 3
Query:    3 NCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPYGLNLMAQSM 392
            N NY  CG A+GVDLLNNPDL+ATDPV+SFK+A+WFWMT Q PKPSCH+VII  W PS+ +  A RLPG+G+ TNIINGG+ECG+G ++ V++RIGF+  +C   G+ PGDNLDC NQR +G  L+  ++
Sbjct:  199 NYNYGPCGRAIGVDLLNNPDLVATDPVISFKTALWFWMTPQSPKPSCHDVIIGRWNPSSADRAANRLPGFGVITNIINGGLECGRGTDNRVQDRIGFYRRYCSILGVTPGDNLDCVNQRWFGNALLVDTL 328          
BLAST of EG026621 vs. ExPASy Swiss-Prot
Match: CHI1_GOSHI (Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.140e-45
Identity = 80/130 (61.54%), Postives = 98/130 (75.38%), Query Frame = 3
Query:    3 NCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPYGLNLMAQSM 392
            N NY +CG A+GVDLLNNPDLL++DP +SFKSA WFWMT Q PKPSCH VII  W PS+ +  AGR+PGYG+ TNIINGG+ECG+G N  V +RIGF+  +C   G+  G+NLDCYNQ P+G  +   SM
Sbjct:  195 NYNYGQCGRAIGVDLLNNPDLLSSDPTISFKSAFWFWMTPQSPKPSCHNVIIGAWSPSSSDRAAGRVPGYGVITNIINGGLECGKGWNAQVEDRIGFYKRYCDILGVSYGNNLDCYNQSPFGNGVSVDSM 324          
BLAST of EG026621 vs. ExPASy Swiss-Prot
Match: CHI3_SOLTU (Endochitinase 3 (Fragment) OS=Solanum tuberosum GN=CHTB3 PE=2 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 1.489e-45
Identity = 79/130 (60.77%), Postives = 99/130 (76.15%), Query Frame = 3
Query:    3 NCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPYGLNLMAQSM 392
            N NY  CG A+GVDLLNNPDL+ATD V+SFKSAIWFWMT Q PKPSCH+VI   W+PS  +  A R+PG+G+ TNIINGG+ECG G +  V++RIGF+  +CG  G+ PGDNLDC NQR +G  L+  ++
Sbjct:  189 NYNYGPCGRAIGVDLLNNPDLVATDSVISFKSAIWFWMTPQSPKPSCHDVITGRWQPSGADQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGDNLDCGNQRSFGNGLLVDTV 318          
BLAST of EG026621 vs. ExPASy Swiss-Prot
Match: CHIB_ARATH (Basic endochitinase B OS=Arabidopsis thaliana GN=CHI-B PE=1 SV=3)

HSP 1 Score: 181.8 bits (460), Expect = 1.945e-45
Identity = 79/121 (65.29%), Postives = 96/121 (79.34%), Query Frame = 3
Query:    3 NCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPY 365
            N NY  CG A+GVDLLNNPDL+A D V++FK+AIWFWMTAQPPKPSCH VI  +W+PS  +  AGRLPGYG+ TNIINGG+ECG+G +  V +RIGF+  +C  FG+ PG NLDCYNQR +
Sbjct:  206 NYNYGLCGRAIGVDLLNNPDLVANDAVIAFKAAIWFWMTAQPPKPSCHAVIAGQWQPSDADRAAGRLPGYGVITNIINGGLECGRGQDGRVADRIGFYQRYCNIFGVNPGGNLDCYNQRSF 326          
The following BLAST results are available for this feature:
BLAST of EG026621 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHI2_PEA3.544e-4763.85Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=... [more]
CHI2_TOBAC7.895e-4762.31Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1... [more]
CHI1_TOBAC7.895e-4763.08Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1... [more]
CHI1_SOLTU1.759e-4661.54Endochitinase 1 (Fragment) OS=Solanum tuberosum GN... [more]
CHIC_SOLLC3.918e-4661.54Basic 30 kDa endochitinase OS=Solanum lycopersicum... [more]
CHI1_THECC3.918e-4663.85Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 S... [more]
CHIT_SOLTU1.140e-4560.77Endochitinase OS=Solanum tuberosum PE=2 SV=1[more]
CHI1_GOSHI1.140e-4561.54Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1[more]
CHI3_SOLTU1.489e-4560.77Endochitinase 3 (Fragment) OS=Solanum tuberosum GN... [more]
CHIB_ARATH1.945e-4565.29Basic endochitinase B OS=Arabidopsis thaliana GN=C... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAB3DA06ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EG026621 ID=EG026621; Name=EG026621; organism=Citrus clementina; type=EST; length=558bp
GGAATTGCAATTACTTAAGGTGCGGAGAAGCCTTGGGGGTGGACTTGTTG
AACAATCCAGACCTTCTTGCCACTGATCCAGTACTATCATTCAAGTCAGC
AATCTGGTTCTGGATGACTGCACAGCCACCAAAGCCATCGTGCCACGAAG
TCATTATCGACGAATGGAAACCATCAGCAATTGAAGTAAACGCCGGCCGG
CTTCCGGGATACGGTCTAACCACAAATATAATCAACGGTGGAATTGAATG
TGGCCAAGGTGGGAATGACGCTGTACGCAACCGTATTGGGTTCTTTACCA
CTTTCTGTGGCAAGTTTGGGATTCAGCCTGGTGACAATCTTGATTGCTAC
AACCAACGGCCTTATGGCCTTAATCTGATGGCACAATCTATGTGATCATC
ATGATCAAGGTTTTAGTAAAATAAGCTTAATAAAAGCTACTTAATAAAAA
CTTTAGATGTCACAGTTGTAGGTGGACAACTAAATTATTCGTTTGTTACG
CTCTTATTGCAAGTAATTTAAATAAGACTGATCCAACATGGATCAATGAG
TCTTCTCC
back to top