EH406147

Overview
NameEH406147
Unique NameEH406147
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length479
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EH406147_ssr374 microsatellite EH406147_ssr374:374..385. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9900 contig Ccv1_Contig9900:4..482. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of EH406147 vs. ExPASy Swiss-Prot
Match: C72A1_CATRO (Secologanin synthase OS=Catharanthus roseus GN=CYP72A1 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 6.608e-16
Identity = 33/74 (44.59%), Postives = 59/74 (79.73%), Query Frame = 3 
Query:    6 NESRNHLASFFPFGLGPRVCVGQNLAMVEAKVVLAIIIRRFNFFLSPSYVHAPMLFISMQPQHGAHILFSRIHN 227
            N ++N++ ++ PF  GPRVC+GQN A+++AK+ LA+I++RF F ++PSYVHAP   +++QPQ G+H+++ ++ +
Sbjct:  452 NATKNNV-TYLPFSWGPRVCLGQNFALLQAKLGLAMILQRFKFDVAPSYVHAPFTILTVQPQFGSHVIYKKLES 524
The following BLAST results are available for this feature:
BLAST of EH406147 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
C72A1_CATRO6.608e-1644.59Secologanin synthase OS=Catharanthus roseus GN=CYP... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAB1AE07ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EH406147 ID=EH406147; Name=EH406147; organism=Citrus clementina; type=EST; length=479bp
GGTTCAACGAGTCTCGAAATCACTTGGCTTCATTTTTCCCATTTGGCTTG
GGCCCCAGAGTCTGCGTAGGCCAAAATTTAGCCATGGTTGAGGCCAAAGT
TGTTCTGGCTATTATTATCCGAAGATTTAATTTCTTTTTGTCGCCAAGTT
ATGTTCATGCTCCAATGCTGTTTATAAGCATGCAGCCTCAACATGGTGCC
CACATCCTGTTTAGCAGGATTCACAATTGAAAATTTATCGGCTTGCATAG
ATTTCATCGGCCCTGGACGATTCAGCTTTCATGGATTGAGTTTCAAGAGT
TTATATATGGACCCGGAATTGACAGGCCAGAGAAAGAATGGAGTATGAAT
CTACAATACTTGGTCAAAAGAAAAAATAAATAAATGTAAAATGTTGTTGT
CTTACCACCGTACACAAACGAAATCTGACGGCTGTCTATTGTTGTAGTTT
TGAATGCAATGGAACTTCATTAGATCGTC
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