EH406153
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of EH406153 vs. ExPASy Swiss-Prot
Match: HDT2_MAIZE (Histone deacetylase HDT2 OS=Zea mays GN=HDT2 PE=1 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 4.546e-24 Identity = 55/99 (55.56%), Postives = 72/99 (72.73%), Query Frame = 3 Query: 45 PKKAESNKKRPVESASKTHVPDKKAKFVTP--QKTEERKGVSHIATPHPSKKSAKTLANSDQTKQQPRKSGSSFPCKSCNRSFTTEGGLQSHTKAKHGA 335 PKK E+ KKR E+A KT + DKKAK TP QKT +KG +H+ATPHP+K KT AN+D+ ++ KSG S PCKSC+++F +E LQ+H+KAKHGA Sbjct: 206 PKKPEAGKKRGAENALKTPLSDKKAKVATPPAQKTGGKKGATHVATPHPAK--GKTPANNDKLTEKSPKSGGSVPCKSCSKTFNSEMALQAHSKAKHGA 302
BLAST of EH406153 vs. ExPASy Swiss-Prot
Match: HDT1_SOLCH (Histone deacetylase HDT1 OS=Solanum chacoense GN=HDT1 PE=2 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 5.026e-23 Identity = 54/97 (55.67%), Postives = 65/97 (67.01%), Query Frame = 3 Query: 45 PKKAESNKKRPVESASKTHVPDKKAKFVTPQKTEERKGVSHIATPHPSKKSAKTLANSDQTKQQPRKSGSSFPCKSCNRSFTTEGGLQSHTKAKHGA 335 PKKAE K+R +SA+KT V DKKAK TPQKT+ +KG H+ATPHPSK+++KT KS S CK CNRSF +EG L SH+KAKH A Sbjct: 182 PKKAEPAKRRKADSATKTPVTDKKAKLTTPQKTDGKKGGGHVATPHPSKQASKT-----------PKSAGSHHCKPCNRSFGSEGALDSHSKAKHSA 267
BLAST of EH406153 vs. ExPASy Swiss-Prot
Match: HDT3_ARATH (Histone deacetylase HDT3 OS=Arabidopsis thaliana GN=HDT3 PE=1 SV=2) HSP 1 Score: 105.916 bits (263), Expect = 6.564e-23 Identity = 56/104 (53.85%), Postives = 68/104 (65.38%), Query Frame = 3 Query: 45 PKKAESNKKRPVE-SASKTHVPDKKAKFVTPQKTEERKGVSHIATPHPSKKSAKTLANSD----QTKQQPRKSGSSFPCKSCNRSFTTEGGLQSHTKAKHGAPA 341 PKK E KKR E ++SK +KKAKFVTPQKT+ +K H+ATPHPSK++ K +QQ KS +F CKSC R+FT+E GLQSHTKAKH A A Sbjct: 191 PKKPEEPKKRSAEPNSSKNPASNKKAKFVTPQKTDSKKPHVHVATPHPSKQAGKNSGGGSTGETSKQQQTPKSAGAFGCKSCTRTFTSEMGLQSHTKAKHSAAA 294
BLAST of EH406153 vs. ExPASy Swiss-Prot
Match: HDT1_SOYBN (Histone deacetylase HDT1 OS=Glycine max GN=HDT1 PE=2 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 1.617e-21 Identity = 52/95 (54.74%), Postives = 61/95 (64.21%), Query Frame = 3 Query: 48 KKAESNKKRPVESASKTHVPDKKAKFVTPQKTEERKGVSHIATPHPSKKSAKTLANSDQTKQQPRKSGSSFPCKSCNRSFTTEGGLQSHTKAKHG 332 KK + KKRP ESA+KT + KKAK TP+KT+ +K V H+ATPHPSKK KT + TK Q S C SC +SFT E GLQ H KAKHG Sbjct: 203 KKVDQGKKRPNESAAKTPISAKKAKTATPEKTDGKKSV-HVATPHPSKKGGKT---PNSTKGQTPNSAGQLSCASCKKSFTNEAGLQQHKKAKHG 293
BLAST of EH406153 vs. ExPASy Swiss-Prot
Match: HDT1_MAIZE (Histone deacetylase HDT1 OS=Zea mays GN=HDT1 PE=1 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 5.201e-20 Identity = 54/104 (51.92%), Postives = 72/104 (69.23%), Query Frame = 3 Query: 45 PKKAESNKKRPVESAS-KTHVPDKKAKFVTP--QKTEERKGVS-HIATPHPSKKSAKTLANSDQTKQQPR---KSGSSFPCKSCNRSFTTEGGLQSHTKAKHGA 335 PKK E KKRP ES+ KT + DKKAK TP QKT +KG + H+ATPHP+K KT+ N+D++ + P+ KSG S PCK C++SF +E LQ+H++AK GA Sbjct: 200 PKKPEVGKKRPAESSVLKTPLSDKKAKVATPSSQKTGGKKGAAVHVATPHPAK--GKTIVNNDKSVKSPKSAPKSGGSVPCKPCSKSFISETALQAHSRAKMGA 301
BLAST of EH406153 vs. ExPASy Swiss-Prot
Match: HDT3_MAIZE (Histone deacetylase HDT3 OS=Zea mays GN=HDT3 PE=2 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 2.854e-18 Identity = 51/101 (50.50%), Postives = 69/101 (68.32%), Query Frame = 3 Query: 45 PKKAESNKKRPVESAS-KTHVPDKKAKFVTP--QKTEERKGVS-HIATPHPSKKSAKTLANSDQTKQQPRKSGSS-FPCKSCNRSFTTEGGLQSHTKAKHG 332 PKK E KKR ES+ KT + DKKAK TP QKT +KG + H+ATPHP+K KT+ N+D++ + P+ + S PCKSC++SF +E Q+H+KAKHG Sbjct: 200 PKKPEVGKKRAAESSVLKTPLSDKKAKVATPSSQKTGGKKGAAVHVATPHPAK--GKTIVNNDKSVKSPKSAPKSGVPCKSCSKSFISETAPQAHSKAKHG 298
BLAST of EH406153 vs. ExPASy Swiss-Prot
Match: HDT2_ARATH (Histone deacetylase HDT2 OS=Arabidopsis thaliana GN=HDT2 PE=1 SV=2) HSP 1 Score: 68.1662 bits (165), Expect = 1.517e-11 Identity = 41/77 (53.25%), Postives = 48/77 (62.34%), Query Frame = 3 Query: 45 PKKAES-NKKRPVESASKTHVPDKKAKFV-----TPQKTEERKGVSHIATPHPSKKSAKTLANSDQTKQQPRKSGSS 257 PKK E NKKRP ES SKT V KKAK TPQKTEE+K H ATPHP+KK K+ N++Q+ P+ G S Sbjct: 200 PKKPEPINKKRPNESVSKTPVSGKKAKPAAAPASTPQKTEEKKKGGHTATPHPAKKGGKSPVNANQS---PKSGGQS 273 The following BLAST results are available for this feature:
BLAST of EH406153 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 7
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >EH406153 ID=EH406153; Name=EH406153; organism=Citrus clementina; type=EST; length=410bpback to top |