EH406157

Overview
NameEH406157
Unique NameEH406157
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length501
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig157 contig Ccv1_Contig157:192..692. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EH406157 vs. ExPASy Swiss-Prot
Match: RL24_PRUAV (60S ribosomal protein L24 OS=Prunus avium GN=RPL24 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.945e-22
Identity = 51/54 (94.44%), Postives = 52/54 (96.30%), Query Frame = 3
Query:    3 KQHKKDIAAEAVKKKRRATKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAAL 164
            KQHKKDIA EAVKK+RR TKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAAL
Sbjct:   59 KQHKKDIAQEAVKKRRRTTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAAL 112          

HSP 2 Score: 23.8682 bits (50), Expect = 2.945e-22
Identity = 7/18 (38.89%), Postives = 13/18 (72.22%), Query Frame = 2
Query:  272 GCRPEGPQARRWWWKAVN 325
            G +P+GP+   W W+A++
Sbjct:  149 GAQPKGPKLGGWRWQALS 166          
BLAST of EH406157 vs. ExPASy Swiss-Prot
Match: RL24_CICAR (60S ribosomal protein L24 OS=Cicer arietinum GN=RPL24 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 9.897e-21
Identity = 50/54 (92.59%), Postives = 52/54 (96.30%), Query Frame = 3
Query:    3 KQHKKDIAAEAVKKKRRATKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAAL 164
            KQHKKD A EAVKK+RRATKKPYSRSIVGATLEVIQK+RTEKPEVRDAAREAAL
Sbjct:   59 KQHKKDAAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRTEKPEVRDAAREAAL 112          
BLAST of EH406157 vs. ExPASy Swiss-Prot
Match: RL242_ARATH (60S ribosomal protein L24-2 OS=Arabidopsis thaliana GN=RPL24B PE=2 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 8.379e-20
Identity = 48/54 (88.89%), Postives = 51/54 (94.44%), Query Frame = 3
Query:    3 KQHKKDIAAEAVKKKRRATKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAAL 164
            KQHKKD A EAVK++RRATKKPYSRSIVGATLEVIQK+R EKPEVRDAAREAAL
Sbjct:   59 KQHKKDAAQEAVKRRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAAL 112          
BLAST of EH406157 vs. ExPASy Swiss-Prot
Match: RL241_ARATH (60S ribosomal protein L24-1 OS=Arabidopsis thaliana GN=RPL24A PE=1 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 8.379e-20
Identity = 48/54 (88.89%), Postives = 51/54 (94.44%), Query Frame = 3
Query:    3 KQHKKDIAAEAVKKKRRATKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAAL 164
            KQHKKD A EAVK++RRATKKPYSRSIVGATLEVIQK+R EKPEVRDAAREAAL
Sbjct:   59 KQHKKDAAQEAVKRRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAAL 112          
BLAST of EH406157 vs. ExPASy Swiss-Prot
Match: RL24_HORVU (60S ribosomal protein L24 OS=Hordeum vulgare GN=RPL24 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.094e-19
Identity = 48/54 (88.89%), Postives = 50/54 (92.59%), Query Frame = 3
Query:    3 KQHKKDIAAEAVKKKRRATKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAAL 164
            KQHKKDI AEA KK+RR TKKPYSRSIVGATLEVIQK+R EKPEVRDAAREAAL
Sbjct:   59 KQHKKDIHAEAAKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAAL 112          
The following BLAST results are available for this feature:
BLAST of EH406157 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RL24_PRUAV2.945e-2294.4460S ribosomal protein L24 OS=Prunus avium GN=RPL24... [more]
RL24_CICAR9.897e-2192.5960S ribosomal protein L24 OS=Cicer arietinum GN=RP... [more]
RL242_ARATH8.379e-2088.8960S ribosomal protein L24-2 OS=Arabidopsis thalian... [more]
RL241_ARATH8.379e-2088.8960S ribosomal protein L24-1 OS=Arabidopsis thalian... [more]
RL24_HORVU1.094e-1988.8960S ribosomal protein L24 OS=Hordeum vulgare GN=RP... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAB1AG01ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EH406157 ID=EH406157; Name=EH406157; organism=Citrus clementina; type=EST; length=501bp
GGAAACAGCACAAGAAGGACATTGCTGCTGAGGCGGTTAAGAAGAAGCGT
CGTGCCACTAAGAAGCCCTATTCAAGATCTATAGTTGGTGCCACCTTGGA
AGTTATCCAGAAGAGAAGAACTGAGAAGCCAGAAGTCCGAGATGCTGCAC
GGGAGGCTGCACTTCGTGAAATTAAGGAGAGGATCAAGAAGACTAAGGAT
GAAAAGAAGGCAAAGAAAGCGGAGACGATGTCCAAGTCACAGAAGTCTCA
AGTCAAAAGTAGCGTGCCTAAGGGTGCCGCCCCGAAGGGCCCCAAGCTAG
GCGGTGGTGGTGGAAAGCGGTGAATTGCTTAGTCTTTTCAAATCTGCGGA
TGAGTATAAACAATTAGAACTTAATTTCATGTTTCTTGTATGGATTGATC
AATCATGTAGACCAGATTTTTTTGTGGTTTTTGTTTATGGTTTTGCGTTG
GGAGTTAATTTGCCTTTTACTTAATTGAATCAAAGTTTTCTCAAGCATCA
A
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