EH406208

Overview
NameEH406208
Unique NameEH406208
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length729
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10014 contig Ccv1_Contig10014:30..758. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EH406208 vs. ExPASy Swiss-Prot
Match: UBC7_ARATH (Ubiquitin-conjugating enzyme E2 7 OS=Arabidopsis thaliana GN=UBC7 PE=2 SV=1)

HSP 1 Score: 270.781 bits (691), Expect = 5.343e-72
Identity = 122/151 (80.79%), Postives = 134/151 (88.74%), Query Frame = 3
Query:   66 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDESPANIDAAKEWRERKDEFKKKVSRCVRKSLEM 518
            DLCK+PVDGFSAGLVDE N+FEWSV+IIGPPDTLYEGGFFNAIMTFP NYP SPPTVRFTS+MWHPNVY DG+VCISILHPPGDDP+GYELA+ERWTPVHTVE            PNDESPAN++AAKEWR+++DEFKKKVSRCVRKS EM
Sbjct:   15 DLCKHPVDGFSAGLVDEKNIFEWSVTIIGPPDTLYEGGFFNAIMTFPQNYPNSPPTVRFTSDMWHPNVYSDGRVCISILHPPGDDPSGYELASERWTPVHTVESIMLSIISMLSGPNDESPANVEAAKEWRDKRDEFKKKVSRCVRKSQEM 165          
BLAST of EH406208 vs. ExPASy Swiss-Prot
Match: UBC13_ARATH (Ubiquitin-conjugating enzyme E2 13 OS=Arabidopsis thaliana GN=UBC13 PE=2 SV=1)

HSP 1 Score: 268.855 bits (686), Expect = 2.030e-71
Identity = 121/151 (80.13%), Postives = 134/151 (88.74%), Query Frame = 3
Query:   66 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDESPANIDAAKEWRERKDEFKKKVSRCVRKSLEM 518
            DLCK+PVDGFSAGLVDE N+FEWSV+IIGPPDTLYEGGFF AIM+FP NYP SPPTVRFTS++WHPNVYPDG+VCISILHPPGDDP+GYELA+ERWTPVHTVE            PNDESPAN++AAKEWRE++DEFKKKVSRCVRKS EM
Sbjct:   15 DLCKHPVDGFSAGLVDEKNIFEWSVTIIGPPDTLYEGGFFYAIMSFPQNYPNSPPTVRFTSDIWHPNVYPDGRVCISILHPPGDDPSGYELASERWTPVHTVESIMLSIISMLSGPNDESPANVEAAKEWREKRDEFKKKVSRCVRKSQEM 165          
BLAST of EH406208 vs. ExPASy Swiss-Prot
Match: UBC14_ARATH (Ubiquitin-conjugating enzyme E2 14 OS=Arabidopsis thaliana GN=UBC14 PE=2 SV=1)

HSP 1 Score: 266.929 bits (681), Expect = 7.715e-71
Identity = 121/152 (79.61%), Postives = 133/152 (87.50%), Query Frame = 3
Query:   66 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDESPANIDAAKEWRERKDEFKKKVSRCVRKSLEML 521
            DLCK PVDGFSAGLVDE NVF+WSVSI+GPPDTLYEGGFFNAIM+FP+NYPVSPPTV FTSEMWHPNVY DGKVCISILHPPGDDP+GYELA+ERWTPVHTVE            PNDESPAN++AAKEWR+ + EF+KKVSRCVR+S EML
Sbjct:   16 DLCKKPVDGFSAGLVDEKNVFQWSVSIMGPPDTLYEGGFFNAIMSFPENYPVSPPTVTFTSEMWHPNVYSDGKVCISILHPPGDDPHGYELASERWTPVHTVESIVLSIISMLSGPNDESPANVEAAKEWRDNRAEFRKKVSRCVRRSQEML 167          
BLAST of EH406208 vs. ExPASy Swiss-Prot
Match: UBC7_WHEAT (Ubiquitin-conjugating enzyme E2 7 OS=Triticum aestivum GN=UBC7 PE=2 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 7.733e-63
Identity = 111/147 (75.51%), Postives = 123/147 (83.67%), Query Frame = 3
Query:   81 PVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDESPANIDAAKEWRERKDEFKKKVSRCVRKSLEML 521
            P  GF  G VD+SNVFEW V+IIGPP+TLY+GG+FNAIM+FP NYP SPPTVRFTSEMWHPNVYPDG+VCISI HPPGDDPNGYELA+ERWTPVHTVE            PNDESPANI+AAK+WRE++DEFKKKV R VRKS EML
Sbjct:   23 PSMGFQLGFVDDSNVFEWQVTIIGPPETLYDGGYFNAIMSFPQNYPNSPPTVRFTSEMWHPNVYPDGRVCISI-HPPGDDPNGYELASERWTPVHTVESIVLSIISMLSSPNDESPANIEAAKDWREKQDEFKKKVRRAVRKSQEML 168          
BLAST of EH406208 vs. ExPASy Swiss-Prot
Match: UBC15_SCHPO (Ubiquitin-conjugating enzyme E2 15 OS=Schizosaccharomyces pombe GN=ubc15 PE=2 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.462e-53
Identity = 94/152 (61.84%), Postives = 117/152 (76.97%), Query Frame = 3
Query:   66 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDESPANIDAAKEWRERKDEFKKKVSRCVRKSLEML 521
            ++ KNP  GFS GLVD+ ++FEW V IIGP DTLYEGGFF+A ++FP +YP+ PP ++FT+E+WHPNV+P+G+VCISILHPPGDD  GYE A ERW PVH+ E            PNDESPANIDAAKE+RE   EFKK+V R VR+S+EM+
Sbjct:   16 EIQKNPPQGFSVGLVDDKSIFEWEVMIIGPEDTLYEGGFFHATLSFPQDYPLMPPKMKFTTEIWHPNVHPNGEVCISILHPPGDDKYGYEDAGERWLPVHSPETILISVISMLSSPNDESPANIDAAKEFRENPQEFKKRVRRLVRRSIEMI 167          
BLAST of EH406208 vs. ExPASy Swiss-Prot
Match: UB2G1_RAT (Ubiquitin-conjugating enzyme E2 G1 OS=Rattus norvegicus GN=Ube2g1 PE=2 SV=3)

HSP 1 Score: 199.519 bits (506), Expect = 1.513e-50
Identity = 91/151 (60.26%), Postives = 113/151 (74.83%), Query Frame = 3
Query:   66 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDESPANIDAAKEWRE-RKDEFKKKVSRCVRKSLE 515
            +L KNPV+GFSAGL+D+++++ W V IIGPPDTLYEGG F A +TFP +YP+ PP ++F +E+WHPNV  +G VCISILH PG+D  GYE   ERW P+HTVE            PN +SPAN+DAAKEWRE R  EFK+KV+RCVRKS E
Sbjct:   16 ELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWREDRNGEFKRKVARCVRKSQE 166          
BLAST of EH406208 vs. ExPASy Swiss-Prot
Match: UB2G1_MOUSE (Ubiquitin-conjugating enzyme E2 G1 OS=Mus musculus GN=Ube2g1 PE=2 SV=3)

HSP 1 Score: 199.519 bits (506), Expect = 1.513e-50
Identity = 91/151 (60.26%), Postives = 113/151 (74.83%), Query Frame = 3
Query:   66 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDESPANIDAAKEWRE-RKDEFKKKVSRCVRKSLE 515
            +L KNPV+GFSAGL+D+++++ W V IIGPPDTLYEGG F A +TFP +YP+ PP ++F +E+WHPNV  +G VCISILH PG+D  GYE   ERW P+HTVE            PN +SPAN+DAAKEWRE R  EFK+KV+RCVRKS E
Sbjct:   16 ELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWREDRNGEFKRKVARCVRKSQE 166          
BLAST of EH406208 vs. ExPASy Swiss-Prot
Match: UB2G1_HUMAN (Ubiquitin-conjugating enzyme E2 G1 OS=Homo sapiens GN=UBE2G1 PE=1 SV=3)

HSP 1 Score: 199.519 bits (506), Expect = 1.513e-50
Identity = 91/151 (60.26%), Postives = 113/151 (74.83%), Query Frame = 3
Query:   66 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDESPANIDAAKEWRE-RKDEFKKKVSRCVRKSLE 515
            +L KNPV+GFSAGL+D+++++ W V IIGPPDTLYEGG F A +TFP +YP+ PP ++F +E+WHPNV  +G VCISILH PG+D  GYE   ERW P+HTVE            PN +SPAN+DAAKEWRE R  EFK+KV+RCVRKS E
Sbjct:   16 ELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWREDRNGEFKRKVARCVRKSQE 166          
BLAST of EH406208 vs. ExPASy Swiss-Prot
Match: UB2G1_MACFA (Ubiquitin-conjugating enzyme E2 G1 OS=Macaca fascicularis GN=UBE2G1 PE=2 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 9.805e-50
Identity = 90/151 (59.60%), Postives = 112/151 (74.17%), Query Frame = 3
Query:   66 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDESPANIDAAKEWRE-RKDEFKKKVSRCVRKSLE 515
            +L KNPV+GFSAGL+D+++++ W V IIGPPDTLYEGG F A +TFP +YP+ PP ++F +E+WHPNV  +G VCISILH PG+D  GYE    RW P+HTVE            PN +SPAN+DAAKEWRE R  EFK+KV+RCVRKS E
Sbjct:   16 ELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEGRWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWREDRNGEFKRKVARCVRKSQE 166          
BLAST of EH406208 vs. ExPASy Swiss-Prot
Match: UBC7_CAEEL (Probable ubiquitin-conjugating enzyme E2 7 OS=Caenorhabditis elegans GN=ubc-7 PE=1 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 2.184e-49
Identity = 90/150 (60.00%), Postives = 110/150 (73.33%), Query Frame = 3
Query:   66 DLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXXPNDESPANIDAAKEWRERKDEFKKKVSRCVRKSLE 515
            D+ + PVDGFSAGLVD++++++W V +IGPPDTLYEGGFF AI+ FP +YP  PP ++F SE+WHPN+  +G VCISILH PGDD  GYE   ERW PVHTVE            PN ESPAN+DAAK  RE   EFKKKV++CVR+S E
Sbjct:   14 DMRRVPVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPKMKFISEIWHPNIDKEGNVCISILHDPGDDKWGYERPEERWLPVHTVETILLSVISMLTDPNFESPANVDAAKMQRENYAEFKKKVAQCVRRSQE 163          
The following BLAST results are available for this feature:
BLAST of EH406208 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 159
Match NameE-valueIdentityDescription
UBC7_ARATH5.343e-7280.79Ubiquitin-conjugating enzyme E2 7 OS=Arabidopsis t... [more]
UBC13_ARATH2.030e-7180.13Ubiquitin-conjugating enzyme E2 13 OS=Arabidopsis ... [more]
UBC14_ARATH7.715e-7179.61Ubiquitin-conjugating enzyme E2 14 OS=Arabidopsis ... [more]
UBC7_WHEAT7.733e-6375.51Ubiquitin-conjugating enzyme E2 7 OS=Triticum aest... [more]
UBC15_SCHPO1.462e-5361.84Ubiquitin-conjugating enzyme E2 15 OS=Schizosaccha... [more]
UB2G1_RAT1.513e-5060.26Ubiquitin-conjugating enzyme E2 G1 OS=Rattus norve... [more]
UB2G1_MOUSE1.513e-5060.26Ubiquitin-conjugating enzyme E2 G1 OS=Mus musculus... [more]
UB2G1_HUMAN1.513e-5060.26Ubiquitin-conjugating enzyme E2 G1 OS=Homo sapiens... [more]
UB2G1_MACFA9.805e-5059.60Ubiquitin-conjugating enzyme E2 G1 OS=Macaca fasci... [more]
UBC7_CAEEL2.184e-4960.00Probable ubiquitin-conjugating enzyme E2 7 OS=Caen... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1CG09ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EH406208 ID=EH406208; Name=EH406208; organism=Citrus clementina; type=EST; length=729bp
GTTCTCTCTAATATTTTTCAATGGCGAAGTCTCAGGCTAGTCTCCTCCTT
CAGAAGCAGCTCAAAGATCTTTGTAAGAACCCAGTTGATGGATTCTCTGC
TGGGTTGGTGGATGAGAGCAATGTCTTTGAATGGAGTGTGTCCATTATTG
GACCCCCTGATACTTTATATGAGGGGGGATTCTTCAATGCCATAATGACT
TTTCCTGATAATTACCCTGTGAGTCCTCCAACTGTGAGGTTTACATCAGA
GATGTGGCATCCTAATGTTTACCCTGACGGAAAGGTTTGCATTTCAATTC
TTCATCCCCCGGGTGATGATCCAAATGGCTATGAGCTTGCAACCGAACGG
TGGACTCCCGTACATACGGTTGAGAGCATAGTTTTAAGTATTATCTCAAT
GCTTTCCAGCCCAAATGACGAATCTCCTGCAAACATTGATGCTGCGAAAG
AATGGAGAGAAAGAAAGGATGAATTTAAGAAGAAAGTTAGTCGCTGTGTT
AGAAAATCACTAGAAATGTTGAGTTGATTTTCCGATTGCTTGCTGCAATG
CATCTCTGTCTAGGAGCATCATGCCTTTCTTCATTGGAAAAAGGGATTGG
TGGTCATCGGACAATAAATTGCAGCTTGTAGAACTAAAATTAAGTTTTTT
TTTTTTTTTTTTCTTGTTTCTCAATCCTTTATAACCTCGACTTTTCTTTT
TGCAATTCTTAAAACTTGTGCTAGTTTGA
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