EH406215

Overview
NameEH406215
Unique NameEH406215
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length562
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13369 contig Ccv1_Contig13369:632..1193. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EH406215 vs. ExPASy Swiss-Prot
Match: FBRL2_ARATH (rRNA 2'-O-methyltransferase fibrillarin 2 OS=Arabidopsis thaliana GN=FIB2 PE=1 SV=2)

HSP 1 Score: 228.794 bits (582), Expect = 1.424e-59
Identity = 114/120 (95.00%), Postives = 117/120 (97.50%), Query Frame = 2
Query:    2 AKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVVGGYRMPKKQKA*T 361
            AKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLK+GGHFVISIKANCIDSTVPAEAVFQ+EVKKLQQ+QFKP EQVTLEPFERDHACVVGGYRMPKK KA T
Sbjct:  199 AKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKSGGHFVISIKANCIDSTVPAEAVFQTEVKKLQQEQFKPAEQVTLEPFERDHACVVGGYRMPKKPKAAT 318          
BLAST of EH406215 vs. ExPASy Swiss-Prot
Match: FBRL1_ARATH (rRNA 2'-O-methyltransferase fibrillarin 1 OS=Arabidopsis thaliana GN=FIB1 PE=1 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 1.575e-58
Identity = 112/117 (95.73%), Postives = 114/117 (97.44%), Query Frame = 2
Query:    2 AKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVVGGYRMPKKQK 352
            AKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNAS+FLK GGHFVISIKANCIDSTV AEAVFQSEVKKLQQ+QFKP EQVTLEPFERDHACVVGGYRMPKKQK
Sbjct:  188 AKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASFFLKTGGHFVISIKANCIDSTVAAEAVFQSEVKKLQQEQFKPAEQVTLEPFERDHACVVGGYRMPKKQK 304          
BLAST of EH406215 vs. ExPASy Swiss-Prot
Match: FBLL1_MOUSE (rRNA/tRNA 2'-O-methyltransferase fibrillarin-like protein 1 OS=Mus musculus GN=Fbll1 PE=2 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 2.358e-46
Identity = 89/117 (76.07%), Postives = 102/117 (87.18%), Query Frame = 2
Query:    2 AKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVVGGYRMPKKQK 352
            AKKRTN+IP++EDARHP KYRML+GMVDVIF+DVAQPDQ+RI+ALNA  FL+ GGHF+ISIKANCIDST  AEAVF SEV+KLQQ+  KP EQ+TLEP+ERDHA VVG YR P K K
Sbjct:  198 AKKRTNIIPVLEDARHPLKYRMLIGMVDVIFADVAQPDQSRIVALNAHTFLRNGGHFLISIKANCIDSTASAEAVFASEVRKLQQENLKPQEQLTLEPYERDHAVVVGVYRPPPKSK 314          
BLAST of EH406215 vs. ExPASy Swiss-Prot
Match: FBRL_XENLA (rRNA 2'-O-methyltransferase fibrillarin OS=Xenopus laevis GN=fbl PE=2 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 3.080e-46
Identity = 90/117 (76.92%), Postives = 101/117 (86.32%), Query Frame = 2
Query:    2 AKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVVGGYRMPKKQK 352
            AKKRTN+IP+IEDARHP KYR+LVGMVDV+F+DVAQPDQ RI+ALNA  FLK GGHFVISIKANCIDST   EAVF +EVKK+QQ+  KP EQ+TLEP+ERDHA VVG YR P KQK
Sbjct:  206 AKKRTNIIPVIEDARHPHKYRILVGMVDVVFADVAQPDQTRIVALNAHNFLKNGGHFVISIKANCIDSTAAPEAVFAAEVKKMQQENMKPQEQLTLEPYERDHAVVVGIYRPPPKQK 322          
BLAST of EH406215 vs. ExPASy Swiss-Prot
Match: FBRL_DROER (rRNA 2'-O-methyltransferase fibrillarin OS=Drosophila erecta GN=Fib PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 3.080e-46
Identity = 91/116 (78.45%), Postives = 100/116 (86.21%), Query Frame = 2
Query:    2 AKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVVGGYRMPKKQ 349
            AKKRTN+IPIIEDARHP KYRMLVGMVD IF+DVAQPDQ RI+ALNA +FLK GGHFVISIKA+CIDST   EAVF SEVKK+Q D+ KP EQ+TLEP+ERDHA VVG YR P KQ
Sbjct:  230 AKKRTNIIPIIEDARHPHKYRMLVGMVDTIFADVAQPDQGRIVALNAQHFLKNGGHFVISIKASCIDSTAQPEAVFASEVKKMQADKLKPQEQLTLEPYERDHAVVVGVYRPPPKQ 345          
BLAST of EH406215 vs. ExPASy Swiss-Prot
Match: FBRL_RAT (rRNA 2'-O-methyltransferase fibrillarin OS=Rattus norvegicus GN=Fbl PE=1 SV=2)

HSP 1 Score: 183.726 bits (465), Expect = 5.254e-46
Identity = 90/117 (76.92%), Postives = 100/117 (85.47%), Query Frame = 2
Query:    2 AKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVVGGYRMPKKQK 352
            AKKRTN+IP+IEDARHP KYRML+ MVDVIF+DVAQPDQ RI+ALNA  FL+ GGHFVISIKANCIDST  AEAVF SEVKK+QQ+  KP EQ+TLEP+ERDHA VVG YR P K K
Sbjct:  210 AKKRTNIIPVIEDARHPHKYRMLIAMVDVIFADVAQPDQTRIVALNAHTFLRNGGHFVISIKANCIDSTASAEAVFASEVKKMQQENMKPQEQLTLEPYERDHAVVVGVYRPPPKAK 326          
BLAST of EH406215 vs. ExPASy Swiss-Prot
Match: FBRL_MOUSE (rRNA 2'-O-methyltransferase fibrillarin OS=Mus musculus GN=Fbl PE=1 SV=2)

HSP 1 Score: 183.341 bits (464), Expect = 6.862e-46
Identity = 90/117 (76.92%), Postives = 100/117 (85.47%), Query Frame = 2
Query:    2 AKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVVGGYRMPKKQK 352
            AKKRTN+IP+IEDARHP KYRML+ MVDVIF+DVAQPDQ RI+ALNA  FL+ GGHFVISIKANCIDST  AEAVF SEVKK+QQ+  KP EQ+TLEP+ERDHA VVG YR P K K
Sbjct:  210 AKKRTNIIPVIEDARHPHKYRMLIAMVDVIFADVAQPDQTRIVALNAHTFLRNGGHFVISIKANCIDSTASAEAVFASEVKKMQQENMKPQEQLTLEPYERDHAVVVGVYRPPPKVK 326          
BLAST of EH406215 vs. ExPASy Swiss-Prot
Match: FBRL_HUMAN (rRNA 2'-O-methyltransferase fibrillarin OS=Homo sapiens GN=FBL PE=1 SV=2)

HSP 1 Score: 183.341 bits (464), Expect = 6.862e-46
Identity = 90/117 (76.92%), Postives = 100/117 (85.47%), Query Frame = 2
Query:    2 AKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVVGGYRMPKKQK 352
            AKKRTN+IP+IEDARHP KYRML+ MVDVIF+DVAQPDQ RI+ALNA  FL+ GGHFVISIKANCIDST  AEAVF SEVKK+QQ+  KP EQ+TLEP+ERDHA VVG YR P K K
Sbjct:  204 AKKRTNIIPVIEDARHPHKYRMLIAMVDVIFADVAQPDQTRIVALNAHTFLRNGGHFVISIKANCIDSTASAEAVFASEVKKMQQENMKPQEQLTLEPYERDHAVVVGVYRPPPKVK 320          
BLAST of EH406215 vs. ExPASy Swiss-Prot
Match: FBRL_DROME (rRNA 2'-O-methyltransferase fibrillarin OS=Drosophila melanogaster GN=Fib PE=1 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 6.862e-46
Identity = 90/116 (77.59%), Postives = 100/116 (86.21%), Query Frame = 2
Query:    2 AKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVVGGYRMPKKQ 349
            AKKRTN+IPIIEDARHP KYRMLVGMVD IF+DVAQPDQ RI+ALNA +FLK GGHFVISIKA+CIDST   EAVF +EVKK+Q D+ KP EQ+TLEP+ERDHA VVG YR P KQ
Sbjct:  229 AKKRTNIIPIIEDARHPHKYRMLVGMVDTIFADVAQPDQGRIVALNAQHFLKNGGHFVISIKASCIDSTAQPEAVFAAEVKKMQADKLKPQEQLTLEPYERDHAVVVGVYRPPPKQ 344          
BLAST of EH406215 vs. ExPASy Swiss-Prot
Match: FBLL1_HUMAN (rRNA/tRNA 2'-O-methyltransferase fibrillarin-like protein 1 OS=Homo sapiens GN=FBLL1 PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 5.809e-45
Identity = 88/115 (76.52%), Postives = 102/115 (88.70%), Query Frame = 2
Query:    2 AKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVVGGYR-MPK 343
            AKKRTN+IP++EDARHP KYRML+GMVDVIF+DVAQPDQ+RI+ALNA  FL+ GGHF+ISIKANCIDST  AEAVF SEV+KLQQ+  KP EQ+TLEP+ERDHA VVG YR +PK
Sbjct:  216 AKKRTNIIPVLEDARHPLKYRMLIGMVDVIFADVAQPDQSRIVALNAHTFLRNGGHFLISIKANCIDSTASAEAVFASEVRKLQQENLKPQEQLTLEPYERDHAVVVGVYRPLPK 330          
The following BLAST results are available for this feature:
BLAST of EH406215 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
FBRL2_ARATH1.424e-5995.00rRNA 2'-O-methyltransferase fibrillarin 2 OS=Arabi... [more]
FBRL1_ARATH1.575e-5895.73rRNA 2'-O-methyltransferase fibrillarin 1 OS=Arabi... [more]
FBLL1_MOUSE2.358e-4676.07rRNA/tRNA 2'-O-methyltransferase fibrillarin-like ... [more]
FBRL_XENLA3.080e-4676.92rRNA 2'-O-methyltransferase fibrillarin OS=Xenopus... [more]
FBRL_DROER3.080e-4678.45rRNA 2'-O-methyltransferase fibrillarin OS=Drosoph... [more]
FBRL_RAT5.254e-4676.92rRNA 2'-O-methyltransferase fibrillarin OS=Rattus ... [more]
FBRL_MOUSE6.862e-4676.92rRNA 2'-O-methyltransferase fibrillarin OS=Mus mus... [more]
FBRL_HUMAN6.862e-4676.92rRNA 2'-O-methyltransferase fibrillarin OS=Homo sa... [more]
FBRL_DROME6.862e-4677.59rRNA 2'-O-methyltransferase fibrillarin OS=Drosoph... [more]
FBLL1_HUMAN5.809e-4576.52rRNA/tRNA 2'-O-methyltransferase fibrillarin-like ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1CH09ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EH406215 ID=EH406215; Name=EH406215; organism=Citrus clementina; type=EST; length=562bp
GGCAAAGAAGAGAACTAATGTTATACCCATAATTGAAGATGCTAGACATC
CTGCCAAGTACCGTATGTTGGTCGGTATGGTAGATGTAATATTTTCTGAC
GTTGCCCAACCGGATCAGGCGAGGATTTTAGCCCTGAATGCATCATATTT
TCTCAAAGCTGGAGGTCATTTTGTTATTTCTATCAAGGCAAACTGCATAG
ATTCCACTGTTCCTGCTGAGGCAGTGTTCCAGAGTGAAGTTAAGAAGCTG
CAACAGGATCAGTTCAAACCCTTTGAGCAAGTGACACTCGAGCCCTTTGA
GCGAGATCACGCCTGTGTTGTTGGTGGCTACCGTATGCCAAAGAAACAGA
AGGCTTAGACCATCATCGGACATCCACCATTTTGTTGTATCCAAACATTA
ATGCTGGAGTCGTTGATTTTGTAGTAGCTAGCTGGGATGAACAATTTTGT
GCTATCTGACCTTGTTATGTTTTATTGAGATTCTTTGCGTGGAACCTCAT
TGTGAAAATGCTTGTTAAAACCCTTTGATCATGTAGCGAAATCTCAATCG
TTCGTCCTGTTT
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