EH406220

Overview
NameEH406220
Unique NameEH406220
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length647
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10036 contig Ccv1_Contig10036:4..650. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EH406220 vs. ExPASy Swiss-Prot
Match: CYSK_CITLA (Cysteine synthase OS=Citrullus lanatus PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.969e-32
Identity = 72/94 (76.60%), Postives = 79/94 (84.04%), Query Frame = 2
Query:    2 GIGAGVIPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGXXXXXXIRVAKRPENAGKLIVVIFPSAGERYLSTALFESIRHEVENM 283
            GIGAG IP VLDV +LDEVI VSSEE+IET+KLLALKEGLLVGISSG      IR+AKRPENAGKLIV +FPS GERYLST LFES++ E ENM
Sbjct:  228 GIGAGFIPGVLDVNLLDEVIQVSSEESIETAKLLALKEGLLVGISSGAAAAAAIRIAKRPENAGKLIVAVFPSFGERYLSTVLFESVKRETENM 321          
BLAST of EH406220 vs. ExPASy Swiss-Prot
Match: CYSK_SOLTU (Cysteine synthase OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 6.334e-31
Identity = 68/97 (70.10%), Postives = 81/97 (83.51%), Query Frame = 2
Query:    2 GIGAGVIPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGXXXXXXIRVAKRPENAGKLIVVIFPSAGERYLSTALFESIRHEVENMPID 292
            GIGAG IP VL+V ++D+V+ VSSEE+IE +KLLALKEGLLVGISSG      I+VAKRPENAGKLIVVIFPS GERYLS+ LFE++R E ENM ++
Sbjct:  228 GIGAGFIPGVLEVNLIDDVVQVSSEESIEMAKLLALKEGLLVGISSGAAAAAAIKVAKRPENAGKLIVVIFPSFGERYLSSVLFETVRREAENMTVE 324          
BLAST of EH406220 vs. ExPASy Swiss-Prot
Match: CYSK_SPIOL (Cysteine synthase OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 5.362e-30
Identity = 66/97 (68.04%), Postives = 80/97 (82.47%), Query Frame = 2
Query:    2 GIGAGVIPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGXXXXXXIRVAKRPENAGKLIVVIFPSAGERYLSTALFESIRHEVENMPID 292
            G+GAG IP VLDV ++DEV+ +SSEE+IE +KLLALKEGLLVGISSG      I+VAKRPENAGKLIV +FPS GERYLS+ LF+S+R E E+M I+
Sbjct:  228 GLGAGFIPGVLDVNIIDEVVQISSEESIEMAKLLALKEGLLVGISSGAAAAAAIKVAKRPENAGKLIVAVFPSFGERYLSSVLFDSVRKEAESMVIE 324          
BLAST of EH406220 vs. ExPASy Swiss-Prot
Match: CYSK_MAIZE (Cysteine synthase OS=Zea mays PE=1 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 9.146e-30
Identity = 66/97 (68.04%), Postives = 79/97 (81.44%), Query Frame = 2
Query:    2 GIGAGVIPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGXXXXXXIRVAKRPENAGKLIVVIFPSAGERYLSTALFESIRHEVENMPID 292
            GIGAG IP VLDV +LDE + VSS+EAIET+K LALKEGLLVGISSG      +R+AKRPENAGKL VV+FPS GERYLS+ LF+SI+ E E+M ++
Sbjct:  228 GIGAGFIPGVLDVDLLDETLQVSSDEAIETAKALALKEGLLVGISSGAAAAAAVRLAKRPENAGKLFVVVFPSFGERYLSSVLFQSIKKEAESMVVE 324          
BLAST of EH406220 vs. ExPASy Swiss-Prot
Match: CYSKM_ARATH (Cysteine synthase, mitochondrial OS=Arabidopsis thaliana GN=OASC PE=1 SV=3)

HSP 1 Score: 130.183 bits (326), Expect = 9.146e-30
Identity = 68/94 (72.34%), Postives = 76/94 (80.85%), Query Frame = 2
Query:    2 GIGAGVIPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGXXXXXXIRVAKRPENAGKLIVVIFPSAGERYLSTALFESIRHEVENM 283
            GIGAG IP  LD  ++DEVI +SSEEAIET+K LALKEGL+VGISSG      I+VAKRPENAGKLI V+FPS GERYLST LF+SIR EVE M
Sbjct:  333 GIGAGFIPKNLDQKIMDEVIAISSEEAIETAKQLALKEGLMVGISSGAAAAAAIKVAKRPENAGKLIAVVFPSFGERYLSTPLFQSIREEVEKM 426          
BLAST of EH406220 vs. ExPASy Swiss-Prot
Match: CYSKP_ARATH (Cysteine synthase, chloroplastic/chromoplastic OS=Arabidopsis thaliana GN=OASB PE=1 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 2.661e-29
Identity = 67/94 (71.28%), Postives = 76/94 (80.85%), Query Frame = 2
Query:    2 GIGAGVIPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGXXXXXXIRVAKRPENAGKLIVVIFPSAGERYLSTALFESIRHEVENM 283
            GIGAG +P  LD+A++DE I +SSEEAIETSK LAL+EGLLVGISSG      I+VAKRPENAGKLI V+FPS GERYLST LF+SIR E E M
Sbjct:  295 GIGAGFVPKNLDLAIVDEYIAISSEEAIETSKQLALQEGLLVGISSGAAAAAAIQVAKRPENAGKLIAVVFPSFGERYLSTQLFQSIREECEQM 388          
BLAST of EH406220 vs. ExPASy Swiss-Prot
Match: CYSK2_ORYSJ (Cysteine synthase OS=Oryza sativa subsp. japonica GN=RCS3 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.661e-29
Identity = 66/94 (70.21%), Postives = 76/94 (80.85%), Query Frame = 2
Query:    2 GIGAGVIPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGXXXXXXIRVAKRPENAGKLIVVIFPSAGERYLSTALFESIRHEVENM 283
            GIGAG +P VLDV +LDEV+ VSS+EAI  +K LALKEGLLVGISSG      IRVA+RPEN GKL+VV+FPS GERYLS+ LFESI+ E ENM
Sbjct:  228 GIGAGFVPGVLDVNLLDEVVQVSSDEAISMAKQLALKEGLLVGISSGAAAVAAIRVAQRPENKGKLVVVVFPSFGERYLSSVLFESIKREAENM 321          
BLAST of EH406220 vs. ExPASy Swiss-Prot
Match: CYSKP_SPIOL (Cysteine synthase, chloroplastic/chromoplastic OS=Spinacia oleracea GN=CYSK PE=1 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 2.253e-28
Identity = 62/94 (65.96%), Postives = 75/94 (79.79%), Query Frame = 2
Query:    2 GIGAGVIPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGXXXXXXIRVAKRPENAGKLIVVIFPSAGERYLSTALFESIRHEVENM 283
            G+GAG +P  LD+ ++DEVI VSSEEA+E +K LA+KEGLLVGISSG      +R+ KRPENAGKLI V+FPS GERYLS+ LF+SIR E ENM
Sbjct:  287 GLGAGFVPSNLDLGVMDEVIEVSSEEAVEMAKQLAMKEGLLVGISSGAAAAAAVRIGKRPENAGKLIAVVFPSFGERYLSSILFQSIREECENM 380          
BLAST of EH406220 vs. ExPASy Swiss-Prot
Match: CYSK_WHEAT (Cysteine synthase OS=Triticum aestivum GN=CYS1 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 6.554e-28
Identity = 64/97 (65.98%), Postives = 77/97 (79.38%), Query Frame = 2
Query:    2 GIGAGVIPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGXXXXXXIRVAKRPENAGKLIVVIFPSAGERYLSTALFESIRHEVENMPID 292
            GIGAG IP VLDV ++DE I VSS+E+IE +K LALKEGLLVGISSG      I+VA+RPENAGKL VV+FPS GERYLS+ LF SI+ E E+M ++
Sbjct:  229 GIGAGFIPGVLDVDIIDETIQVSSDESIEMAKSLALKEGLLVGISSGAAAAAAIKVAQRPENAGKLFVVVFPSFGERYLSSVLFHSIKKEAESMVVE 325          
BLAST of EH406220 vs. ExPASy Swiss-Prot
Match: CYSK1_ORYSJ (Cysteine synthase OS=Oryza sativa subsp. japonica GN=RCS1 PE=2 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 8.560e-28
Identity = 61/97 (62.89%), Postives = 77/97 (79.38%), Query Frame = 2
Query:    2 GIGAGVIPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGXXXXXXIRVAKRPENAGKLIVVIFPSAGERYLSTALFESIRHEVENMPID 292
            GIGAG +P VLDV +++E + VSS+EAIE +K LALKEGLLVGISSG      +R+A+RPEN GKL VV+FPS GERYLS+ LF+SI+ E ENM ++
Sbjct:  225 GIGAGFVPGVLDVDLINETVQVSSDEAIEMAKALALKEGLLVGISSGAAAAAAVRLAQRPENEGKLFVVVFPSFGERYLSSVLFQSIKKEAENMVVE 321          
The following BLAST results are available for this feature:
BLAST of EH406220 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
CYSK_CITLA1.969e-3276.60Cysteine synthase OS=Citrullus lanatus PE=2 SV=1[more]
CYSK_SOLTU6.334e-3170.10Cysteine synthase OS=Solanum tuberosum PE=2 SV=1[more]
CYSK_SPIOL5.362e-3068.04Cysteine synthase OS=Spinacia oleracea PE=1 SV=1[more]
CYSK_MAIZE9.146e-3068.04Cysteine synthase OS=Zea mays PE=1 SV=2[more]
CYSKM_ARATH9.146e-3072.34Cysteine synthase, mitochondrial OS=Arabidopsis th... [more]
CYSKP_ARATH2.661e-2971.28Cysteine synthase, chloroplastic/chromoplastic OS=... [more]
CYSK2_ORYSJ2.661e-2970.21Cysteine synthase OS=Oryza sativa subsp. japonica ... [more]
CYSKP_SPIOL2.253e-2865.96Cysteine synthase, chloroplastic/chromoplastic OS=... [more]
CYSK_WHEAT6.554e-2865.98Cysteine synthase OS=Triticum aestivum GN=CYS1 PE=... [more]
CYSK1_ORYSJ8.560e-2862.89Cysteine synthase OS=Oryza sativa subsp. japonica ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1DC09ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EH406220 ID=EH406220; Name=EH406220; organism=Citrus clementina; type=EST; length=647bp
GGGTATTGGTGCTGGTGTCATCCCTCCTGTTTTGGACGTTGCCATGCTCG
ATGAAGTTATTACAGTATCAAGTGAGGAAGCTATTGAAACTAGTAAGCTG
CTTGCCCTGAAGGAAGGTTTGCTGGTTGGAATATCTTCTGGTGCAGCAGC
GGCAGCTGCTATACGAGTAGCAAAGAGGCCTGAAAATGCAGGGAAACTCA
TTGTTGTGATTTTCCCCAGTGCTGGAGAGCGTTATCTATCCACAGCATTG
TTCGAATCCATTAGACACGAAGTGGAAAATATGCCCATTGATTAAGACGT
CACCAAGTTTAGTAAGCAGCTGCCTGAATTTGGGACAAACATCCCTGCAT
TTTCCGTATGTGCCAGCTTATATTTACTTACTCTTTATCGACTGTATTTT
AGTTCTTCTGATGCTGTGACGGCTAGATTCTAGAGAATGGAACTAAGCCT
TCAGCACAAGAAGATTCAATAAATTTTGTATGTAAAATTGCAATTTAGAC
AACCAATCTGCTAAGAAAGCAATGCATTGTAAAATAATCTCAAATTTGCT
TCCCTTTGCTAGCAAGGTTTGGACAAGTTTGACAGATAGTTGTTTGTTGT
TATTTGCAAGCAACTTAAATTCTGCAATGAAATTAAACTTTAAACGC
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