EH406234 | Citrus Genome Database

Overview


Name	EH406234
Unique Name	EH406234
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	179

Libraries


Library Name	Type
AbsCOv1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Ccv1_Contig14256	contig	Ccv1_Contig14256:9..187.	BLAST: Citrus Unigene V1 Contigs to TAIR9

Homology

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BLAST of EH406234 vs. ExPASy Swiss-Prot
Match: M030_ARATH (Uncharacterized mitochondrial protein AtMg00030 OS=Arabidopsis thaliana GN=AtMg00030 PE=4 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 2.992e-28
Identity = 55/56 (98.21%), Postives = 55/56 (98.21%), Query Frame = -1

Query:    3 MFQFAKFEKSKERRLATELGYGFPIGDPWITDGISPWPFASESVLPSQCPGIHPMH 170
            MFQFAKF KSKERRLATELGYGFPIGDPWITDGISPWPFASESVLPSQCPGIHPMH
Sbjct:    1 MFQFAKFSKSKERRLATELGYGFPIGDPWITDGISPWPFASESVLPSQCPGIHPMH 56

The following BLAST results are available for this feature:

BLAST of EH406234 vs. ExPASy Swiss-Prot

BLAST of EH406234 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1


Match Name	E-value	Identity	Description
M030_ARATH	2.992e-28	98.21	Uncharacterized mitochondrial protein AtMg00030 OS...	[more]

Properties


Property Name	Value
Genbank description	KN0AAB2DD05ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EH406234 ID=EH406234; Name=EH406234; organism=Citrus clementina; type=EST; length=179bp
GAATGCATTGGATGGATGCCCGGGCATTGAGAAGGAAGGACGCTTTCAGA
GGCGAAAGGCCATGGGGAGATACCGTCTGTGATCCATGGATCTCCGATCG
GGAAACCGTATCCAAGCTCCGTGGCTAGTCTGCGCTCTTTGGACTTTTCA
AACTTAGCGAACTGAAACATCTGAGTAGC