EH406239

Overview
NameEH406239
Unique NameEH406239
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14328 contig Ccv1_Contig14328:456..1171. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EH406239 vs. ExPASy Swiss-Prot
Match: RM02_ORYSJ (60S ribosomal protein L2, mitochondrial OS=Oryza sativa subsp. japonica GN=RPL2 PE=2 SV=2)

HSP 1 Score: 195.282 bits (495), Expect = 2.764e-49
Identity = 94/126 (74.60%), Postives = 108/126 (85.71%), Query Frame = 2
Query:    5 GTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYK 382
            GT +H+IE +PGQG KL RAAGT AKI+KEP S  CLVRLPSG EKLID+RCRATIG VSNP+HGA+KLRKAGQSRW GRRP+VRGVAMNPVDHPHGGGEGR+K     GR S++PWGKP K+G++
Sbjct:  372 GTWVHDIECHPGQGAKLARAAGTYAKIIKEPASQ-CLVRLPSGVEKLIDSRCRATIGIVSNPNHGARKLRKAGQSRWSGRRPIVRGVAMNPVDHPHGGGEGRTKG----GRPSVSPWGKPTKAGFR 492          
BLAST of EH406239 vs. ExPASy Swiss-Prot
Match: RM02_ORYSI (60S ribosomal protein L2, mitochondrial OS=Oryza sativa subsp. indica GN=RPL2 PE=2 SV=2)

HSP 1 Score: 195.282 bits (495), Expect = 2.764e-49
Identity = 94/126 (74.60%), Postives = 108/126 (85.71%), Query Frame = 2
Query:    5 GTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYK 382
            GT +H+IE +PGQG KL RAAGT AKI+KEP S  CLVRLPSG EKLID+RCRATIG VSNP+HGA+KLRKAGQSRW GRRP+VRGVAMNPVDHPHGGGEGR+K     GR S++PWGKP K+G++
Sbjct:  372 GTWVHDIECHPGQGAKLARAAGTYAKIIKEPASQ-CLVRLPSGVEKLIDSRCRATIGIVSNPNHGARKLRKAGQSRWSGRRPIVRGVAMNPVDHPHGGGEGRTKG----GRPSVSPWGKPTKAGFR 492          
BLAST of EH406239 vs. ExPASy Swiss-Prot
Match: RM02_ORYSA (60S ribosomal protein L2, mitochondrial OS=Oryza sativa GN=RPL2 PE=2 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 2.764e-49
Identity = 94/126 (74.60%), Postives = 108/126 (85.71%), Query Frame = 2
Query:    5 GTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYK 382
            GT +H+IE +PGQG KL RAAGT AKI+KEP S  CLVRLPSG EKLID+RCRATIG VSNP+HGA+KLRKAGQSRW GRRP+VRGVAMNPVDHPHGGGEGR+K     GR S++PWGKP K+G++
Sbjct:  372 GTWVHDIECHPGQGAKLARAAGTYAKIIKEPASQ-CLVRLPSGVEKLIDSRCRATIGIVSNPNHGARKLRKAGQSRWSGRRPIVRGVAMNPVDHPHGGGEGRTKG----GRPSVSPWGKPTKAGFR 492          
BLAST of EH406239 vs. ExPASy Swiss-Prot
Match: RM02_MARPO (60S ribosomal protein L2, mitochondrial OS=Marchantia polymorpha GN=RPL2 PE=3 SV=2)

HSP 1 Score: 182.185 bits (461), Expect = 2.421e-45
Identity = 89/128 (69.53%), Postives = 103/128 (80.47%), Query Frame = 2
Query:    5 GTIIHNIEVNPGQGGKLVRAAGTSAKIL-KEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKT 385
            GT +HNIE NPGQG KL RAAGT A+I+ K   +  C+VRLPSG +KLID+RCRATIG VSN +HG +K  KAGQSRWLGRRP+VRGVAMNPVDHPHGGGEGR+K     GR S++PWGKP K G+KT
Sbjct:  371 GTWVHNIERNPGQGAKLTRAAGTFAQIIQKVENTPQCIVRLPSGVDKLIDSRCRATIGIVSNLNHGKRKFNKAGQSRWLGRRPIVRGVAMNPVDHPHGGGEGRTKG----GRPSVSPWGKPTKGGFKT 494          
BLAST of EH406239 vs. ExPASy Swiss-Prot
Match: RM02_RECAM (60S ribosomal protein L2, mitochondrial OS=Reclinomonas americana GN=RPL2 PE=3 SV=2)

HSP 1 Score: 150.984 bits (380), Expect = 5.977e-36
Identity = 72/122 (59.02%), Postives = 95/122 (77.87%), Query Frame = 2
Query:    5 GTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCK 370
            GT+IHNIE+NPG+GGK+VR+AG+SA+++ +  + FC+++LPSG  +L      ATIG +SN  +   K+ KAG+SRW+GRRP+VRGVAMNPVDHPHGGGEG  K+SG  GR S+TPW  P K
Sbjct:  138 GTMIHNIELNPGKGGKIVRSAGSSAQLISKDENGFCMLKLPSGEYRLFPNNSLATIGILSNIDNKNIKIGKAGRSRWMGRRPIVRGVAMNPVDHPHGGGEG--KTSG--GRPSVTPWSWPTK 255          
BLAST of EH406239 vs. ExPASy Swiss-Prot
Match: RL2_DICT6 (50S ribosomal protein L2 OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) GN=rplB PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 5.060e-35
Identity = 78/127 (61.42%), Postives = 91/127 (71.65%), Query Frame = 2
Query:    5 GTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKT 385
            GT+IHN+E+ PG+GG+LVRAAGT+A+IL +    +  VRLPSG  +L D  CRATIG VSN  H    L KAG+SRWLGRRP VRG AMNPVDHPHGGGEG++          LTPWGKP   GYKT
Sbjct:  138 GTLIHNLELYPGRGGQLVRAAGTAAQILGKE-GKWAYVRLPSGEIRLFDLNCRATIGQVSNVDHQNVSLGKAGRSRWLGRRPHVRGSAMNPVDHPHGGGEGKAPIG---HPSPLTPWGKP-TLGYKT 259          
BLAST of EH406239 vs. ExPASy Swiss-Prot
Match: RL2_THEPX (50S ribosomal protein L2 OS=Thermoanaerobacter sp. (strain X514) GN=rplB PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.127e-34
Identity = 78/127 (61.42%), Postives = 94/127 (74.02%), Query Frame = 2
Query:    5 GTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKT 385
            GTIIHNIE+ PG+GG+LVRAAGT+A+++ +    +  VR+PSG  +LI   CRATIG VSN  H   K+ KAG+SRWLG RP VRG AMNPVDHPHGGGEG++   G+ G   LTPWGKP   GYKT
Sbjct:  138 GTIIHNIELIPGKGGQLVRAAGTAAQLMAKE-GDYVQVRMPSGEIRLIKADCRATIGQVSNLDHENVKIGKAGRSRWLGIRPTVRGSAMNPVDHPHGGGEGKA-PIGHPG--PLTPWGKPA-LGYKT 259          
BLAST of EH406239 vs. ExPASy Swiss-Prot
Match: RL2_THEP3 (50S ribosomal protein L2 OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=rplB PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.127e-34
Identity = 78/127 (61.42%), Postives = 94/127 (74.02%), Query Frame = 2
Query:    5 GTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKT 385
            GTIIHNIE+ PG+GG+LVRAAGT+A+++ +    +  VR+PSG  +LI   CRATIG VSN  H   K+ KAG+SRWLG RP VRG AMNPVDHPHGGGEG++   G+ G   LTPWGKP   GYKT
Sbjct:  138 GTIIHNIELIPGKGGQLVRAAGTAAQLMAKE-GDYVQVRMPSGEIRLIKADCRATIGQVSNLDHENVKIGKAGRSRWLGIRPTVRGSAMNPVDHPHGGGEGKA-PIGHPG--PLTPWGKPA-LGYKT 259          
BLAST of EH406239 vs. ExPASy Swiss-Prot
Match: RL2_BACHK (50S ribosomal protein L2 OS=Bacillus thuringiensis subsp. konkukian GN=rplB PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.472e-34
Identity = 75/128 (58.59%), Postives = 95/128 (74.22%), Query Frame = 2
Query:    5 GTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCS-LTPWGKPCKSGYKT 385
            GT++HNIE+ PG+GG+LVR+AGTSA++L +    + LVRL SG  +L+ + CRAT+G V N SH   K+ KAG+SRWLG+RP VRG  MNPVDHPHGGGEGRS      GR S ++PWGKP   G+KT
Sbjct:  138 GTVVHNIELKPGRGGQLVRSAGTSAQVLGKE-GKYVLVRLTSGEVRLVLSACRATVGQVGNESHELIKIGKAGRSRWLGKRPTVRGSVMNPVDHPHGGGEGRSPI----GRKSPMSPWGKP-TLGFKT 259          
BLAST of EH406239 vs. ExPASy Swiss-Prot
Match: RL2_BACCZ (50S ribosomal protein L2 OS=Bacillus cereus (strain ZK / E33L) GN=rplB PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.472e-34
Identity = 75/128 (58.59%), Postives = 95/128 (74.22%), Query Frame = 2
Query:    5 GTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCS-LTPWGKPCKSGYKT 385
            GT++HNIE+ PG+GG+LVR+AGTSA++L +    + LVRL SG  +L+ + CRAT+G V N SH   K+ KAG+SRWLG+RP VRG  MNPVDHPHGGGEGRS      GR S ++PWGKP   G+KT
Sbjct:  138 GTVVHNIELKPGRGGQLVRSAGTSAQVLGKE-GKYVLVRLTSGEVRLVLSACRATVGQVGNESHELIKIGKAGRSRWLGKRPTVRGSVMNPVDHPHGGGEGRSPI----GRKSPMSPWGKP-TLGFKT 259          
The following BLAST results are available for this feature:
BLAST of EH406239 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RM02_ORYSJ2.764e-4974.6060S ribosomal protein L2, mitochondrial OS=Oryza s... [more]
RM02_ORYSI2.764e-4974.6060S ribosomal protein L2, mitochondrial OS=Oryza s... [more]
RM02_ORYSA2.764e-4974.6060S ribosomal protein L2, mitochondrial OS=Oryza s... [more]
RM02_MARPO2.421e-4569.5360S ribosomal protein L2, mitochondrial OS=Marchan... [more]
RM02_RECAM5.977e-3659.0260S ribosomal protein L2, mitochondrial OS=Reclino... [more]
RL2_DICT65.060e-3561.4250S ribosomal protein L2 OS=Dictyoglomus thermophi... [more]
RL2_THEPX1.127e-3461.4250S ribosomal protein L2 OS=Thermoanaerobacter sp.... [more]
RL2_THEP31.127e-3461.4250S ribosomal protein L2 OS=Thermoanaerobacter pse... [more]
RL2_BACHK1.472e-3458.5950S ribosomal protein L2 OS=Bacillus thuringiensis... [more]
RL2_BACCZ1.472e-3458.5950S ribosomal protein L2 OS=Bacillus cereus (strai... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2BB03ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EH406239 ID=EH406239; Name=EH406239; organism=Citrus clementina; type=EST; length=716bp
GCGGGGGACCATCATTCACAACATTGAGGTAAACCCAGGACAAGGTGGCA
AGCTAGTTAGAGCTGCGGGGACGTCAGCCAAGATTTTGAAAGAACCCACT
TCAAGCTTCTGTTTAGTAAGACTACCTTCTGGTAATGAGAAACTGATTGA
CACTAGATGTCGAGCCACCATTGGTACAGTGTCTAACCCCAGCCATGGAG
CTAAGAAGCTTAGGAAGGCTGGTCAGAGCCGTTGGTTGGGTCGAAGACCT
GTGGTTAGAGGAGTAGCCATGAATCCAGTTGATCATCCTCATGGTGGAGG
TGAGGGACGAAGCAAAAGTAGTGGTAACCATGGACGGTGTTCACTTACAC
CTTGGGGCAAGCCTTGCAAGTCTGGGTATAAAACTGCATCTCCTAAGAAG
AAAAAGAAATTAGCCTTCTGATAATATTGTCCTTTTGTGCTAGTGAGCAT
TTTTAGTATTGTTACATTATTTTGTTTTCTTTGCAGTTAGTTTTTATCCA
GTTTTAACCGATCAATAATGAAACTGAAGTTTAACTTCCGATTGAACTTA
TTGTCATCTAGTTTTACTCTTCTGTCATTTCAATTTAGCATGATTCAAGA
TGCTGCATTCTGTGCCTGGAACTTGTAACCGGGAAAGAGAGGTAATATGG
GTTAGAATATAGATTTTGTGTTTTGCTTTGTCAGGTTTAGAGATACTCTG
TTCTTTTTCATTTGTA
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