EH406240

Overview
NameEH406240
Unique NameEH406240
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length759
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10104 contig Ccv1_Contig10104:4..762. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EH406240 vs. ExPASy Swiss-Prot
Match: P2R3C_XENTR (Serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit gamma OS=Xenopus tropicalis GN=ppp2r3c PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 6.212e-42
Identity = 86/186 (46.24%), Postives = 119/186 (63.98%), Query Frame = 2
Query:    2 EEVTDTEQAENWFSLTSAQRVCDMFIALDKDANGTLSKQELREYADGTLTEIFIERVFDEHVRRGKSGGGNAREMDFDSFLDFVLALENKDTPEGLTYLFRSLDLQERGYLTTADIHSLFRDVHQKWIEGGNYELCIEDVRDEIWDMVKPADPLRITLADLLSCKQGGTVASMLIDVRGFWAHDNR 559
            E+++   Q  NWFS  SA RV   ++ LDKD NG LSK+EL  Y  GTLT +F++RVF E +           EMD+ ++LDFVLALEN+  P  L Y+F+ LD++ +G L    ++  FR + ++    G   +  +DV+DEI+DMVKP DPLRITL DL+   QG TV S+LID+ GFW ++NR
Sbjct:  253 EDLSKESQESNWFSAPSALRVYGQYLNLDKDHNGMLSKEELSRYGTGTLTCVFLDRVFQECLTYDG-------EMDYKTYLDFVLALENRKEPAALQYIFKLLDIENKGSLNVFSLNFFFRAIQEQMKIHGQEAVSFQDVKDEIFDMVKPKDPLRITLQDLIQSSQGDTVCSILIDLNGFWTYENR 431          
BLAST of EH406240 vs. ExPASy Swiss-Prot
Match: P2R3C_DANRE (Serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit gamma OS=Danio rerio GN=ppp2r3c PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.807e-41
Identity = 84/186 (45.16%), Postives = 120/186 (64.52%), Query Frame = 2
Query:    2 EEVTDTEQAENWFSLTSAQRVCDMFIALDKDANGTLSKQELREYADGTLTEIFIERVFDEHVRRGKSGGGNAREMDFDSFLDFVLALENKDTPEGLTYLFRSLDLQERGYLTTADIHSLFRDVHQKWIEGGNYELCIEDVRDEIWDMVKPADPLRITLADLLSCKQGGTVASMLIDVRGFWAHDNR 559
            EE++   Q  NWFS  SA RV   ++ LDKD NG LSK+EL  Y  GTLT +F++RV+   +           EMD+ ++LDFVLALEN+  P  L Y+F+ LD++ +GYL    ++  FR + ++    G   +  +DV+DEI+DMVKP DP +ITL DL++  QG TV+S+LID+ GFW ++NR
Sbjct:  261 EELSKESQESNWFSAPSALRVYGQYLNLDKDHNGMLSKEELSRYGTGTLTSVFLDRVYQACLTYDG-------EMDYKTYLDFVLALENRKEPAALQYIFKLLDMENKGYLNVFALNYFFRAIQEQMKIHGQEPVSFQDVKDEIFDMVKPKDPYKITLQDLVNSGQGDTVSSILIDLNGFWTYENR 439          
BLAST of EH406240 vs. ExPASy Swiss-Prot
Match: P2R3C_RAT (Serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit gamma OS=Rattus norvegicus GN=Ppp2r3c PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 3.083e-41
Identity = 83/186 (44.62%), Postives = 119/186 (63.98%), Query Frame = 2
Query:    2 EEVTDTEQAENWFSLTSAQRVCDMFIALDKDANGTLSKQELREYADGTLTEIFIERVFDEHVRRGKSGGGNAREMDFDSFLDFVLALENKDTPEGLTYLFRSLDLQERGYLTTADIHSLFRDVHQKWIEGGNYELCIEDVRDEIWDMVKPADPLRITLADLLSCKQGGTVASMLIDVRGFWAHDNR 559
            EE++   Q  NWFS  SA RV   ++ LDKD NG LSK+EL  Y   T+T +F++RVF E +           EMD+ ++LDFVLALEN+  P  L Y+F+ LD++ +GYL    ++  FR + +     G   +  +DV+DEI+DMVKP DPL+I+L DL++  QG TV ++LID+ GFW ++NR
Sbjct:  258 EELSKESQETNWFSAPSALRVYGQYLNLDKDHNGMLSKEELSRYGTATMTNVFLDRVFQECLTYDG-------EMDYKTYLDFVLALENRKEPAALQYIFKLLDIENKGYLNVFSLNYFFRAIQELMKIHGQDPVSFQDVKDEIFDMVKPKDPLKISLQDLINSNQGDTVTTILIDLNGFWTYENR 436          
BLAST of EH406240 vs. ExPASy Swiss-Prot
Match: P2R3C_MOUSE (Serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit gamma OS=Mus musculus GN=Ppp2r3c PE=1 SV=2)

HSP 1 Score: 168.703 bits (426), Expect = 3.083e-41
Identity = 83/186 (44.62%), Postives = 119/186 (63.98%), Query Frame = 2
Query:    2 EEVTDTEQAENWFSLTSAQRVCDMFIALDKDANGTLSKQELREYADGTLTEIFIERVFDEHVRRGKSGGGNAREMDFDSFLDFVLALENKDTPEGLTYLFRSLDLQERGYLTTADIHSLFRDVHQKWIEGGNYELCIEDVRDEIWDMVKPADPLRITLADLLSCKQGGTVASMLIDVRGFWAHDNR 559
            EE++   Q  NWFS  SA RV   ++ LDKD NG LSK+EL  Y   T+T +F++RVF E +           EMD+ ++LDFVLALEN+  P  L Y+F+ LD++ +GYL    ++  FR + +     G   +  +DV+DEI+DMVKP DPL+I+L DL++  QG TV ++LID+ GFW ++NR
Sbjct:  258 EELSKESQETNWFSAPSALRVYGQYLNLDKDHNGMLSKEELSRYGTATMTNVFLDRVFQECLTYDG-------EMDYKTYLDFVLALENRKEPAALQYIFKLLDIENKGYLNVFSLNYFFRAIQELMKIHGQDPVSFQDVKDEIFDMVKPKDPLKISLQDLINSNQGDTVTTILIDLNGFWTYENR 436          
BLAST of EH406240 vs. ExPASy Swiss-Prot
Match: P2R3C_HUMAN (Serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit gamma OS=Homo sapiens GN=PPP2R3C PE=1 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 3.083e-41
Identity = 83/186 (44.62%), Postives = 119/186 (63.98%), Query Frame = 2
Query:    2 EEVTDTEQAENWFSLTSAQRVCDMFIALDKDANGTLSKQELREYADGTLTEIFIERVFDEHVRRGKSGGGNAREMDFDSFLDFVLALENKDTPEGLTYLFRSLDLQERGYLTTADIHSLFRDVHQKWIEGGNYELCIEDVRDEIWDMVKPADPLRITLADLLSCKQGGTVASMLIDVRGFWAHDNR 559
            EE++   Q  NWFS  SA RV   ++ LDKD NG LSK+EL  Y   T+T +F++RVF E +           EMD+ ++LDFVLALEN+  P  L Y+F+ LD++ +GYL    ++  FR + +     G   +  +DV+DEI+DMVKP DPL+I+L DL++  QG TV ++LID+ GFW ++NR
Sbjct:  258 EELSKESQETNWFSAPSALRVYGQYLNLDKDHNGMLSKEELSRYGTATMTNVFLDRVFQECLTYDG-------EMDYKTYLDFVLALENRKEPAALQYIFKLLDIENKGYLNVFSLNYFFRAIQELMKIHGQDPVSFQDVKDEIFDMVKPKDPLKISLQDLINSNQGDTVTTILIDLNGFWTYENR 436          
BLAST of EH406240 vs. ExPASy Swiss-Prot
Match: P2R3C_BOVIN (Serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit gamma OS=Bos taurus GN=PPP2R3C PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 3.083e-41
Identity = 83/186 (44.62%), Postives = 119/186 (63.98%), Query Frame = 2
Query:    2 EEVTDTEQAENWFSLTSAQRVCDMFIALDKDANGTLSKQELREYADGTLTEIFIERVFDEHVRRGKSGGGNAREMDFDSFLDFVLALENKDTPEGLTYLFRSLDLQERGYLTTADIHSLFRDVHQKWIEGGNYELCIEDVRDEIWDMVKPADPLRITLADLLSCKQGGTVASMLIDVRGFWAHDNR 559
            EE++   Q  NWFS  SA RV   ++ LDKD NG LSK+EL  Y   T+T +F++RVF E +           EMD+ ++LDFVLALEN+  P  L Y+F+ LD++ +GYL    ++  FR + +     G   +  +DV+DEI+DMVKP DPL+I+L DL++  QG TV ++LID+ GFW ++NR
Sbjct:  258 EELSKESQETNWFSAPSALRVYGQYLNLDKDHNGMLSKEELSRYGTATMTNVFLDRVFQECLTYDG-------EMDYKTYLDFVLALENRKEPAALQYIFKLLDIENKGYLNVFSLNYFFRAIQELMKIHGQDPVSFQDVKDEIFDMVKPKDPLKISLQDLINSNQGDTVTTILIDLNGFWTYENR 436          
BLAST of EH406240 vs. ExPASy Swiss-Prot
Match: P2R3A_MOUSE (Serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit alpha OS=Mus musculus GN=Ppp2r3a PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.221e-13
Identity = 49/182 (26.92%), Postives = 84/182 (46.15%), Query Frame = 2
Query:   14 DTEQAENWFSLTSAQRVCDMFIALDKDANGTLSKQELREYADGTLTEIFIERVFDEHVRRGKSGGGNAREMDFDSFLDFVLALENKDTPEGLTYLFRSLDLQERGYLTTADIHSLFRDVHQKWIEGGNYELCIEDVRDEIWDMVKPADPLRITLADLLSCKQGGTVASMLIDVRGFWAHDNR 559
            D  +  ++FS      +   F  LD D + T+ + +L  + DG ++   I+R+F   V R +       ++ +  F+ F+L+ E+K TP    Y FR +DL   G L+  ++   + +  Q+    G   L   D+  ++ D+V P  P RITL DL  C   G       +V  + A + R
Sbjct:  246 DINRMTSFFSYEHFYVIYCKFWELDLDRDLTIDRSDLARHGDGAISSRMIDRIFSGAVTRARLPR-KVGKLSYADFVWFLLSEEDKTTPTSTEYWFRCMDLDGDGALSMFELEFFYEEQAQRMAARGVEPLPFHDLARQVLDLVAPRCPGRITLRDLKQCGLAGEFFDAFFNVDKYLAREQR 426          
BLAST of EH406240 vs. ExPASy Swiss-Prot
Match: P2R3A_HUMAN (Serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit alpha OS=Homo sapiens GN=PPP2R3A PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.082e-13
Identity = 51/186 (27.42%), Postives = 87/186 (46.77%), Query Frame = 2
Query:    2 EEVTDTEQAENWFSLTSAQRVCDMFIALDKDANGTLSKQELREYADGTLTEIFIERVFDEHVRRGKSGGGNAREMDFDSFLDFVLALENKDTPEGLTYLFRSLDLQERGYLTTADIHSLFRDVHQKWIEGGNYELCIEDVRDEIWDMVKPADPLRITLADLLSCKQGGTVASMLIDVRGFWAHDNR 559
            EE  D  Q  ++FS      +   F  LD D +  +S+ +L  Y D   +   IER+F   V RGK+     R M +  F+ F+++ E+K  P  + Y FR +D+   G L+  ++   + +  ++    G   L   D+  ++ D+VKPA   +ITL DL  C+          ++  +  H+ R
Sbjct:  883 EEEEDINQITDYFSYEHFYVIYCKFWELDTDHDLYISQADLSRYNDQASSSRIIERIFSGAVTRGKTIQKEGR-MSYADFVWFLISEEDKRNPTSIEYWFRCMDVDGDGVLSMYELEYFYEEQCERMEAMGIEPLPFHDLLCQMLDLVKPAVDGKITLRDLKRCRMAHIFYDTFFNLEKYLDHEQR 1067          
BLAST of EH406240 vs. ExPASy Swiss-Prot
Match: P2R3B_HUMAN (Serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit beta OS=Homo sapiens GN=PPP2R3B PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.949e-11
Identity = 46/186 (24.73%), Postives = 83/186 (44.62%), Query Frame = 2
Query:    2 EEVTDTEQAENWFSLTSAQRVCDMFIALDKDANGTLSKQELREYADGTLTEIFIERVFDEHVRRGKSGGGNAREMDFDSFLDFVLALENKDTPEGLTYLFRSLDLQERGYLTTADIHSLFRDVHQKWIEGGNYELCIEDVRDEIWDMVKPADPLRITLADLLSCKQGGTVASMLIDVRGFWAHDNR 559
            EE  D  Q   +FS      +   F  LD D +  +   +L  + D  L+   I+R+F   V RG+      + + +  F+ F+++ E+K TP  + Y FR +DL   G L+  ++   + +  ++        L  +D   ++ D+VKP    +ITL DL  CK          ++  +  H+ +
Sbjct:  299 EEEADINQLTEFFSYEHFYVIYCKFWELDTDHDLLIDADDLARHNDHALSTKMIDRIFSGAVTRGRKVQKEGK-ISYADFVWFLISEEDKKTPTSIEYWFRCMDLDGDGALSMFELEYFYEEQCRRLDSMAIEALPFQDCLCQMLDLVKPRTEGKITLQDLKRCKLANVFFDTFFNIEKYLDHEQK 483          
The following BLAST results are available for this feature:
BLAST of EH406240 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
P2R3C_XENTR6.212e-4246.24Serine/threonine-protein phosphatase 2A regulatory... [more]
P2R3C_DANRE1.807e-4145.16Serine/threonine-protein phosphatase 2A regulatory... [more]
P2R3C_RAT3.083e-4144.62Serine/threonine-protein phosphatase 2A regulatory... [more]
P2R3C_MOUSE3.083e-4144.62Serine/threonine-protein phosphatase 2A regulatory... [more]
P2R3C_HUMAN3.083e-4144.62Serine/threonine-protein phosphatase 2A regulatory... [more]
P2R3C_BOVIN3.083e-4144.62Serine/threonine-protein phosphatase 2A regulatory... [more]
P2R3A_MOUSE1.221e-1326.92Serine/threonine-protein phosphatase 2A regulatory... [more]
P2R3A_HUMAN2.082e-1327.42Serine/threonine-protein phosphatase 2A regulatory... [more]
P2R3B_HUMAN1.949e-1124.73Serine/threonine-protein phosphatase 2A regulatory... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAB2AF04ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EH406240 ID=EH406240; Name=EH406240; organism=Citrus clementina; type=EST; length=759bp
GGAAGAAGTTACTGACACTGAACAAGCTGAAAATTGGTTTTCTTTGACAT
CTGCACAACGCGTATGCGACATGTTTATTGCCCTTGATAAGGATGCAAAT
GGGACGTTGAGCAAGCAGGAGCTTCGAGAATATGCAGATGGGACACTGAC
AGAAATTTTCATTGAGAGGGTATTTGATGAGCATGTCCGACGTGGCAAAA
GTGGAGGAGGAAATGCTAGGGAGATGGACTTCGACAGTTTCCTTGACTTT
GTTCTGGCCTTAGAAAATAAAGATACTCCAGAAGGGTTAACATATTTATT
TCGCAGTCTTGATCTTCAGGAACGGGGATATCTCACTACAGCTGATATTC
ACTCTCTTTTCAGGGACGTGCATCAGAAATGGATTGAGGGTGGGAACTAT
GAACTATGCATTGAGGATGTAAGGGATGAAATCTGGGATATGGTCAAACC
AGCTGACCCACTAAGGATTACTTTGGCCGATCTGCTTTCTTGTAAACAGG
GTGGGACTGTAGCTAGCATGCTTATAGACGTTCGTGGCTTCTGGGCTCAT
GACAATAGAGAAAATCTTCTCCAGGAAGATGAAGAACCTGAAGAAGAATG
ACTGGCTTGTGTATGATTTAAAGGATGTGTTTGTACTAACAAAAGACTGC
TGTCTGAAGCTGATGTATTTTGTTTTGTGTTTATGTATCTCTAAATGAAT
ATCTAGTACTCGAATCTGTATGTTCTCAATGTGTAGAAGAAAGTAGCAGG
AACTTGGAC
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