EH406245

Overview
NameEH406245
Unique NameEH406245
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length509
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13293 contig Ccv1_Contig13293:563..1071. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EH406245 vs. ExPASy Swiss-Prot
Match: SYE_ARATH (Glutamyl-tRNA synthetase OS=Arabidopsis thaliana GN=At5g64050 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.053e-25
Identity = 53/73 (72.60%), Postives = 66/73 (90.41%), Query Frame = 1
Query:   13 FGKMFKRKGKSLFMPLRVLLTGKLHGPDMGASILLIHKAGTHGIVSPRAEFLTLDERFKMLRQVDWEALKKDQ 231
            FGK  KRKGKSLFMPLRVLLTGKLHGP+MG SI+LI+KAG+ GIV P+A F++++ERFK+LR++DWEAL KD+
Sbjct:  486 FGKSLKRKGKSLFMPLRVLLTGKLHGPEMGTSIVLIYKAGSPGIVVPQAGFVSMEERFKILREIDWEALNKDE 558          
BLAST of EH406245 vs. ExPASy Swiss-Prot
Match: SYE_TOBAC (Glutamyl-tRNA synthetase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 3.387e-24
Identity = 51/74 (68.92%), Postives = 62/74 (83.78%), Query Frame = 1
Query:   13 FGKMFKRKGKSLFMPLRVLLTGKLHGPDMGASILLIHKAGTHGIVSPRAEFLTLDERFKMLRQVDWEALKKDQP 234
            FGK+ KRKGKSLFMPLRVLLTGKLHGPD+GA+ +L++KAGT G V P+A F+T DERFK+LR+V WE+   D P
Sbjct:  488 FGKLLKRKGKSLFMPLRVLLTGKLHGPDIGATTVLLYKAGTSGSVVPQAGFVTFDERFKILREVQWESFSTDVP 561          
BLAST of EH406245 vs. ExPASy Swiss-Prot
Match: SYE_HORVU (Glutamyl-tRNA synthetase OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 5.777e-24
Identity = 49/73 (67.12%), Postives = 65/73 (89.04%), Query Frame = 1
Query:   13 FGKMFKRKGKSLFMPLRVLLTGKLHGPDMGASILLIHKAGTHGIVSPRAEFLTLDERFKMLRQVDWEALKKDQ 231
            FGK  KRKGKSLFMPLRVLLTGKLHGP M ++++L+HKAGT G V+P++ F++LDERFK+L++V+WE+L+K Q
Sbjct:  476 FGKTHKRKGKSLFMPLRVLLTGKLHGPAMDSTVILVHKAGTSGAVAPQSGFVSLDERFKILKEVNWESLQKQQ 548          
The following BLAST results are available for this feature:
BLAST of EH406245 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
SYE_ARATH1.053e-2572.60Glutamyl-tRNA synthetase OS=Arabidopsis thaliana G... [more]
SYE_TOBAC3.387e-2468.92Glutamyl-tRNA synthetase OS=Nicotiana tabacum PE=2... [more]
SYE_HORVU5.777e-2467.12Glutamyl-tRNA synthetase OS=Hordeum vulgare PE=2 S... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAB2AG11ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EH406245 ID=EH406245; Name=EH406245; organism=Citrus clementina; type=EST; length=509bp
GCGGGGAATGGCTTTGGGAAAATGTTTAAACGCAAGGGCAAATCACTATT
CATGCCCCTAAGGGTGTTGCTAACTGGAAAACTCCATGGCCCTGATATGG
GTGCCAGCATTCTGTTAATCCATAAAGCTGGAACCCATGGCATTGTTTCT
CCCCGGGCTGAATTTCTGACATTGGACGAGAGGTTTAAAATGCTGAGACA
AGTTGATTGGGAAGCATTAAAGAAGGATCAACCTGCCCTAGAGTCTGCTG
CTGCTACAGCAAATTGAGAATCCAACAATTTTGACCGGGCCATTAGAAGA
AACTAGAGATTTTTTTTTTTTTAAATTTAATTTGTTTGCCCTGTTTAACT
TTGAGAGACAATTTGTATGACATTAGAAGAAATTATTTTTTCTTGGTGTT
ATTGAGAAATAAGGTTTTTACTAGCTAGCTATAAGTGTGAGAACCCAGTG
TAATGAACAAATGTACTTGCAACATATATGAATCAAATGAAATGATCGAT
CCAATCGGT
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