EH406265

Overview
NameEH406265
Unique NameEH406265
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length737
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9839 contig Ccv1_Contig9839:4..740. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EH406265 vs. ExPASy Swiss-Prot
Match: SYT_SYNS3 (Threonyl-tRNA synthetase OS=Synechococcus sp. (strain CC9311) GN=thrS PE=3 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 1.598e-55
Identity = 105/178 (58.99%), Postives = 135/178 (75.84%), Query Frame = 3
Query:    3 GGAFYGPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYAGDFPLWLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRAEICH-GERLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFGGELGTMKVDDFISRIKSATENR 533
            GGAFYGPKIDLKIEDA+GR WQCSTIQ+DFNLP+RF++ Y+ ++  K+RPIMIHRA+ GSLERFFG++ E+YAGDFP WL+P Q R+LPVTD  L Y  E   +LK  GIRA I   G+RL KLIR  EK KIP++AV+GAKE +    ++RSR  G+LG +  +  I+  +SA ++R
Sbjct:  426 GGAFYGPKIDLKIEDAIGRMWQCSTIQLDFNLPERFELDYIAADGSKQRPIMIHRAIFGSLERFFGIMTENYAGDFPFWLAPEQIRLLPVTDEVLGYAEEFQNQLKAAGIRASIDRSGDRLGKLIRIGEKMKIPVLAVIGAKEAEQGAASLRSRRDGDLGVITKERLIATAQSANQDR 603          
BLAST of EH406265 vs. ExPASy Swiss-Prot
Match: SYT_SYNS9 (Threonyl-tRNA synthetase OS=Synechococcus sp. (strain CC9902) GN=thrS PE=3 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 2.088e-55
Identity = 103/178 (57.87%), Postives = 133/178 (74.72%), Query Frame = 3
Query:    3 GGAFYGPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYAGDFPLWLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRAEICH-GERLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFGGELGTMKVDDFISRIKSATENR 533
            GGAFYGPKIDLKIEDA+GR WQCSTIQ+DFNLP+RF + YV ++  K++PIMIHRA+ GSLERFFG++ E+YAGDFP WL+P Q R+LPVTD    Y  +V+ +LKT GIRA I   G+RL K+IR  E+ KIP++AV+GAKE +   +++RSR  G+LG   VD  +   + A   R
Sbjct:  426 GGAFYGPKIDLKIEDAIGRMWQCSTIQLDFNLPERFGLDYVAADGSKQQPIMIHRAIFGSLERFFGIMTENYAGDFPFWLAPEQIRLLPVTDDVQPYAEQVLNQLKTAGIRATIDQSGDRLGKIIRTGEQMKIPVLAVIGAKEAEQNAISLRSRRDGDLGVTSVDALLKAAQRANAER 603          
BLAST of EH406265 vs. ExPASy Swiss-Prot
Match: SYT_SYNSC (Threonyl-tRNA synthetase OS=Synechococcus sp. (strain CC9605) GN=thrS PE=3 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 7.933e-55
Identity = 100/178 (56.18%), Postives = 133/178 (74.72%), Query Frame = 3
Query:    3 GGAFYGPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYAGDFPLWLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRAEICH-GERLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFGGELGTMKVDDFISRIKSATENR 533
            GGAFYGPKIDLKIEDA+GR WQCSTIQ+DFNLP+RF++ Y+ ++  K+RPIMIHRA+ GSLERFFG++ E+YAGD+P WL+P Q R+LPVTD    Y  +++ +L   G+RA +   G+RL KLIR  E+ KIP++AV+GAKE +   V++RSR  G+LG   V D +S  + A   R
Sbjct:  426 GGAFYGPKIDLKIEDAIGRMWQCSTIQLDFNLPERFELDYIAADGSKQRPIMIHRAIFGSLERFFGIMTENYAGDYPFWLAPEQVRLLPVTDEVQPYAEQLLDQLTKAGVRATVDRSGDRLGKLIRTGEQMKIPVLAVIGAKEAEQNAVSLRSRRDGDLGVTAVSDLLSAAQMANSER 603          
BLAST of EH406265 vs. ExPASy Swiss-Prot
Match: SYT_SYNP6 (Threonyl-tRNA synthetase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=thrS PE=3 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.353e-54
Identity = 97/172 (56.40%), Postives = 134/172 (77.91%), Query Frame = 3
Query:    9 AFYGPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYAGDFPLWLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRAEI-CHGERLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFGGELGTMKVDDFISRIKSA 521
            AFYGPK+D   +DAL R+WQ  T+QVD+NLP+RFD+ YV  +  ++RP+MIHRA  GSLER  G+LIE YAGDFPLWL+P Q R+LPVT+T L+YC +V  +L+  G+R ++ C G+RL KLIRNAEK KIP+MAV+GA+E +++T+++R+R  G+LG++ V D   R+ SA
Sbjct:  428 AFYGPKLDFIFQDALDREWQLGTVQVDYNLPERFDLEYVAEDGSRQRPVMIHRAPFGSLERLIGILIEEYAGDFPLWLAPEQIRLLPVTETVLDYCQQVADQLRAIGVRVQVDCSGDRLGKLIRNAEKAKIPVMAVIGAQEAESETLSIRTRATGDLGSLTVADLTKRLSSA 599          
BLAST of EH406265 vs. ExPASy Swiss-Prot
Match: SYT_SYNE7 (Threonyl-tRNA synthetase OS=Synechococcus elongatus (strain PCC 7942) GN=thrS PE=3 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.353e-54
Identity = 97/172 (56.40%), Postives = 134/172 (77.91%), Query Frame = 3
Query:    9 AFYGPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYAGDFPLWLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRAEI-CHGERLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFGGELGTMKVDDFISRIKSA 521
            AFYGPK+D   +DAL R+WQ  T+QVD+NLP+RFD+ YV  +  ++RP+MIHRA  GSLER  G+LIE YAGDFPLWL+P Q R+LPVT+T L+YC +V  +L+  G+R ++ C G+RL KLIRNAEK KIP+MAV+GA+E +++T+++R+R  G+LG++ V D   R+ SA
Sbjct:  425 AFYGPKLDFIFQDALDREWQLGTVQVDYNLPERFDLEYVAEDGSRQRPVMIHRAPFGSLERLIGILIEEYAGDFPLWLAPEQIRLLPVTETVLDYCQQVADQLRAIGVRVQVDCSGDRLGKLIRNAEKAKIPVMAVIGAQEAESETLSIRTRATGDLGSLTVADLTKRLSSA 596          
BLAST of EH406265 vs. ExPASy Swiss-Prot
Match: SYT_SYNPW (Threonyl-tRNA synthetase OS=Synechococcus sp. (strain WH7803) GN=thrS PE=3 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.767e-54
Identity = 101/178 (56.74%), Postives = 133/178 (74.72%), Query Frame = 3
Query:    3 GGAFYGPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYAGDFPLWLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRAEICH-GERLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFGGELGTMKVDDFISRIKSATENR 533
            GGAFYGPKIDLKIEDA+GR WQCSTIQ+DFNLP+RF + Y+ ++  K+RPIMIHRA+ GSLERFFG++ E+YAGD+PLWL+P Q R+LPVTD    Y   ++ +L   G+RA I   G+RL KLIR  E+ KIP++AV+GAKE +   V++RSR  G+LG + V D +   ++A   R
Sbjct:  426 GGAFYGPKIDLKIEDAIGRMWQCSTIQLDFNLPERFKLDYIAADGSKQRPIMIHRAIFGSLERFFGIMTENYAGDYPLWLAPEQVRLLPVTDEVQPYAESLLDQLTQAGVRATIDRSGDRLGKLIRTGEQMKIPVLAVIGAKEAEQNAVSLRSRRDGDLGVVAVADLLRAAQNANSQR 603          
BLAST of EH406265 vs. ExPASy Swiss-Prot
Match: SYT_SYNPX (Threonyl-tRNA synthetase OS=Synechococcus sp. (strain WH8102) GN=thrS PE=3 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 3.014e-54
Identity = 102/178 (57.30%), Postives = 131/178 (73.60%), Query Frame = 3
Query:    3 GGAFYGPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYAGDFPLWLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRAEICH-GERLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFGGELGTMKVDDFISRIKSATENR 533
            GGAFYGPKIDLKIEDA+GR WQCSTIQ+DFNLP+RF + YV ++  K+RPIMIHRA+ GSLERFFG++ E+YAGD+P WL+P Q R+LPVTD    Y   ++ +L   G+RA I   G+RL KLIR  E+ KIP++AV+GAKE +   V++RSR  G+LG   V D +   +SA   R
Sbjct:  426 GGAFYGPKIDLKIEDAIGRMWQCSTIQLDFNLPERFKLDYVAADGSKQRPIMIHRAIFGSLERFFGIMTENYAGDYPFWLAPEQVRLLPVTDEVQPYAESLLDQLTQAGVRATIDRSGDRLGKLIRTGEQMKIPVLAVIGAKEAEQNAVSLRSRRDGDLGVAAVADLLRAAESANSQR 603          
BLAST of EH406265 vs. ExPASy Swiss-Prot
Match: SYT_SULSY (Threonyl-tRNA synthetase OS=Sulfurihydrogenibium sp. (strain YO3AOP1) GN=thrS PE=3 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.496e-53
Identity = 99/178 (55.62%), Postives = 129/178 (72.47%), Query Frame = 3
Query:    3 GGAFYGPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYAGDFPLWLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRAEI-CHGERLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFGGELGTMKVDDFISRIKSATENR 533
            GGAFYGPKID+KI+DA+GR WQCSTIQ DFNLP+RFD+ Y+  +++K RP MIHRA+ GS+ERF GVL+EHYAG  P+WLSP+Q +++P+ D  LEY   V +KL  N IR E+    ER+ K IR+AE QKIP M VVG KE +  TV VR +      T+ +D+F+S+IK    N+
Sbjct:  463 GGAFYGPKIDVKIKDAIGRLWQCSTIQFDFNLPERFDMYYIGEDNQKHRPYMIHRAIFGSIERFIGVLLEHYAGFLPVWLSPVQVKIIPIADKHLEYAETVKQKLLENDIRVELDDRNERMNKKIRDAELQKIPFMLVVGDKEAETGTVAVREKGKQGSQTLSIDEFVSKIKEIISNK 640          
BLAST of EH406265 vs. ExPASy Swiss-Prot
Match: SYT_GEOSL (Threonyl-tRNA synthetase OS=Geobacter sulfurreducens GN=thrS PE=3 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 3.333e-53
Identity = 98/168 (58.33%), Postives = 128/168 (76.19%), Query Frame = 3
Query:    6 GAFYGPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYAGDFPLWLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRAE-ICHGERLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFGGELGTMKVDDFIS 506
            GAFYGPKID+K+ D+L RKWQC+TIQ DF LP+RFD+ YVD++ E+KRP+M+HR +LGS+ERF GVLIEH+AG+FPLWLSP+QA VL VTD Q  Y  +V + L+TNG+R +     E+L   IR A+ QKIP M V+G KEV++ TVT R R G  L  MK ++F++
Sbjct:  459 GAFYGPKIDIKLRDSLDRKWQCATIQCDFTLPERFDLTYVDADGERKRPVMVHRVILGSIERFIGVLIEHFAGNFPLWLSPVQAIVLTVTDNQQPYAAQVFETLRTNGVRVQKDFRNEKLGFKIREAQLQKIPYMLVIGDKEVESGTVTPRFRDGSNLAAMKPEEFVA 626          
BLAST of EH406265 vs. ExPASy Swiss-Prot
Match: SYT_CLONN (Threonyl-tRNA synthetase OS=Clostridium novyi (strain NT) GN=thrS PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 7.425e-53
Identity = 92/178 (51.69%), Postives = 127/178 (71.35%), Query Frame = 3
Query:    6 GAFYGPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYAGDFPLWLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRAEI-CHGERLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFGGELGTMKVDDFISRIKSATENRT 536
            GAFYGPKID  + D LGR WQC TIQ+DF +P+RFD+ YV ++ EK RP+M HR + GS+ERF G+L EHYAG FP WL+P+Q +++ +TD Q+EYC E+ K L  NGIR E+    E++   IR A+ QKIP M V+G KE++ +T+ VR+R  G+LG M + DF++ +K   E +T
Sbjct:  457 GAFYGPKIDFHLRDCLGRTWQCGTIQLDFQMPERFDLSYVGADGEKHRPVMAHRVIFGSIERFIGILTEHYAGAFPTWLAPVQVKIMNITDNQVEYCKEIQKVLNENGIRVELDLRNEKIGYKIREAQLQKIPYMLVLGDKEMNEKTIAVRARKQGDLGAMNLTDFVAMVKKEIEEKT 634          
The following BLAST results are available for this feature:
BLAST of EH406265 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SYT_SYNS31.598e-5558.99Threonyl-tRNA synthetase OS=Synechococcus sp. (str... [more]
SYT_SYNS92.088e-5557.87Threonyl-tRNA synthetase OS=Synechococcus sp. (str... [more]
SYT_SYNSC7.933e-5556.18Threonyl-tRNA synthetase OS=Synechococcus sp. (str... [more]
SYT_SYNP61.353e-5456.40Threonyl-tRNA synthetase OS=Synechococcus sp. (str... [more]
SYT_SYNE71.353e-5456.40Threonyl-tRNA synthetase OS=Synechococcus elongatu... [more]
SYT_SYNPW1.767e-5456.74Threonyl-tRNA synthetase OS=Synechococcus sp. (str... [more]
SYT_SYNPX3.014e-5457.30Threonyl-tRNA synthetase OS=Synechococcus sp. (str... [more]
SYT_SULSY1.496e-5355.62Threonyl-tRNA synthetase OS=Sulfurihydrogenibium s... [more]
SYT_GEOSL3.333e-5358.33Threonyl-tRNA synthetase OS=Geobacter sulfurreduce... [more]
SYT_CLONN7.425e-5351.69Threonyl-tRNA synthetase OS=Clostridium novyi (str... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2BG09ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EH406265 ID=EH406265; Name=EH406265; organism=Citrus clementina; type=EST; length=737bp
GTGGTGGTGCGTTTTATGGTCCAAAGATTGATCTTAAGATTGAGGATGCT
CTTGGAAGGAAGTGGCAGTGCTCAACCATACAGGTTGATTTCAATTTACC
ACAGCGATTTGACATTGTGTATGTTGACTCAAACTCAGAAAAGAAGCGTC
CCATCATGATCCACAGAGCAGTGCTTGGATCCTTGGAACGTTTCTTTGGA
GTTCTAATAGAGCATTATGCTGGGGATTTTCCTTTGTGGCTTTCTCCAAT
CCAAGCTCGTGTTTTACCAGTTACAGACACACAGCTTGAGTACTGTAATG
AGGTGATAAAAAAACTGAAAACTAATGGTATACGAGCTGAAATTTGCCAT
GGTGAGCGCCTGCCTAAGCTCATTAGAAATGCAGAGAAACAGAAAATTCC
ATTAATGGCAGTCGTTGGAGCTAAGGAAGTTGATGCACAAACTGTTACAG
TCAGATCTAGGTTTGGTGGAGAGCTTGGGACCATGAAAGTTGATGATTTT
ATCAGCAGAATCAAGTCTGCCACTGAAAACAGAACTACAATGTAAAGTTC
TTTGAAATTCTTAGACATGATATTTTTACAGGGATTTGAATACATACGAT
TTTCATTAGATAGCGACATTTTTTTACTCGTAAATTTATCTACTTGAGAA
ACTAAATATTTCTAATTTATGGTTGTAGCCTGTGTACAATAATTTTAGTT
TCTATTTTTCCTAATAAGCAAATAAATATCTGTTTAT
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