EH406272

Overview
NameEH406272
Unique NameEH406272
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length515
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9543 contig Ccv1_Contig9543:21..535. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EH406272 vs. ExPASy Swiss-Prot
Match: TOM7A_ARATH (Mitochondrial import receptor subunit TOM7-1 OS=Arabidopsis thaliana GN=TOM7-1 PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.245e-21
Identity = 47/75 (62.67%), Postives = 60/75 (80.00%), Query Frame = 3
Query:   75 MGSRVTLRT---KGKGVKGAKASEEKSMVDSFKEWSTWTMKKAKVVTHYGFIPLIIIIGMNSDPKPQVYQLLSPV 290
            M S ++L+    KGKG KGA +S++KS  D  KEW+ W++KKAKVVTHYGFIPL+I +GMNSDPKP ++QLLSPV
Sbjct:    1 MESTISLKVNKGKGKGSKGASSSDDKSKFDVVKEWTNWSLKKAKVVTHYGFIPLVIFVGMNSDPKPHLFQLLSPV 75          
BLAST of EH406272 vs. ExPASy Swiss-Prot
Match: TOM7A_SOLTU (Mitochondrial import receptor subunit TOM7-1 OS=Solanum tuberosum GN=TOM7-1 PE=3 SV=3)

HSP 1 Score: 89.3521 bits (220), Expect = 1.090e-17
Identity = 45/71 (63.38%), Postives = 54/71 (76.06%), Query Frame = 3
Query:   93 LRTKGKGVKGAKASEEK----SMVDSF-KEWSTWTMKKAKVVTHYGFIPLIIIIGMNSDPKPQVYQLLSPV 290
            L+ KGK  K A A++E     ++V  F KEW TWT KKAKV+THYGFIPL+IIIGMNS+PKP + QLLSPV
Sbjct:    2 LKPKGKNTKKAAAADEDDGAVAVVGKFVKEWGTWTAKKAKVITHYGFIPLVIIIGMNSEPKPSLSQLLSPV 72          
BLAST of EH406272 vs. ExPASy Swiss-Prot
Match: TOM7B_ARATH (Mitochondrial import receptor subunit TOM7-2 OS=Arabidopsis thaliana GN=TOM7-2 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.860e-17
Identity = 42/77 (54.55%), Postives = 54/77 (70.13%), Query Frame = 3
Query:   75 MGSRVTLRTKGK-----GVKGAKASEEKSMVDSFKEWSTWTMKKAKVVTHYGFIPLIIIIGMNSDPKPQVYQLLSPV 290
            M ++ TL+ KGK     G   + +S   S    FK+W+ W+++KAKV THYGFIPLIIIIGMNSDPKP ++ LLSPV
Sbjct:    1 MAAKSTLKIKGKAKPSKGSSSSSSSSASSKYKVFKDWTNWSLQKAKVATHYGFIPLIIIIGMNSDPKPHLFHLLSPV 77          
The following BLAST results are available for this feature:
BLAST of EH406272 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
TOM7A_ARATH1.245e-2162.67Mitochondrial import receptor subunit TOM7-1 OS=Ar... [more]
TOM7A_SOLTU1.090e-1763.38Mitochondrial import receptor subunit TOM7-1 OS=So... [more]
TOM7B_ARATH1.860e-1754.55Mitochondrial import receptor subunit TOM7-2 OS=Ar... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAB2CE08ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EH406272 ID=EH406272; Name=EH406272; organism=Citrus clementina; type=EST; length=515bp
GCTCAGTCGCTAAAGCCTCCTCTCAACACAACGTTCAATCCGTTCACCGC
AGCAGGTCAAGATTTGAGGAGAAAATGGGTTCTAGAGTAACACTTAGGAC
CAAAGGCAAGGGCGTGAAGGGAGCAAAGGCATCAGAGGAGAAATCAATGG
TCGATTCTTTCAAAGAGTGGAGCACTTGGACCATGAAAAAGGCTAAAGTG
GTCACTCACTATGGATTTATTCCTCTTATCATCATTATCGGCATGAATTC
TGATCCCAAGCCCCAAGTCTATCAGCTCCTCAGCCCCGTTTGATCTCCAT
ACTTGACTCTTCCTTTTCTTTTGATGTCAAACAAAATAGTTATTATCATG
CTGTGCCTTCCTATTTGTCGAATCTACATGAATTGAATGTTTTAGGAGTT
TTGGTTTCTTGTGATCGTACTTCCTGCCTAGTTGTAAGCTTATGGATTGA
CTAGTATAAAATGTCTGGAATTTGAATTATATACCATCTCCATTGAATTG
GAGGCTTCTTTTTCA
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