EH406283

Overview
NameEH406283
Unique NameEH406283
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length448
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EH406283_ssr370 microsatellite EH406283_ssr370:370..387. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9898 contig Ccv1_Contig9898:6..453. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EH406283 vs. ExPASy Swiss-Prot
Match: CIPK8_ARATH (CBL-interacting serine/threonine-protein kinase 8 OS=Arabidopsis thaliana GN=CIPK8 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.456e-21
Identity = 46/65 (70.77%), Postives = 55/65 (84.62%), Query Frame = 3
Query:    3 HFSVILEVFEVAPTFFMVDIQKAAGDAAEYLKFYKNFCSNLEDIIWKPPNESTKAKITNSKSKKR 197
            HFSVILEVF+VAP+  MVDIQ AAGDA EYLKFYK FCS L+DIIWKPP+ S + ++T +KSK+R
Sbjct:  381 HFSVILEVFKVAPSILMVDIQNAAGDAEEYLKFYKTFCSKLDDIIWKPPDASMRNRVTKAKSKRR 445          
BLAST of EH406283 vs. ExPASy Swiss-Prot
Match: CIPK8_ORYSJ (CBL-interacting protein kinase 8 OS=Oryza sativa subsp. japonica GN=CIPK8 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 5.016e-14
Identity = 31/58 (53.45%), Postives = 47/58 (81.03%), Query Frame = 3
Query:    3 HFSVILEVFEVAPTFFMVDIQKAAGDAAEYLKFYKNFCSNLEDIIWKPPNESTKAKIT 176
            H +V+LE+FEVAP+ FM+++Q+AAGD ++Y KF  N+CS L+DIIW  P E +K++I+
Sbjct:  384 HLAVMLEIFEVAPSIFMIELQRAAGDTSDYNKFINNYCSKLDDIIWNFPIEKSKSRIS 441          
BLAST of EH406283 vs. ExPASy Swiss-Prot
Match: CIPKO_ORYSJ (CBL-interacting protein kinase 24 OS=Oryza sativa subsp. japonica GN=CIPK24 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.906e-13
Identity = 31/56 (55.36%), Postives = 43/56 (76.79%), Query Frame = 3
Query:    6 FSVILEVFEVAPTFFMVDIQKAAGDAAEYLKFYKNFCSNLEDIIWKPPNESTKAKI 173
            F+V+L+VFEVAP+ FMVD++K AGD  EY +FYKN C+ +E IIW+P   S K+ +
Sbjct:  392 FAVVLQVFEVAPSLFMVDVRKVAGDTLEYHRFYKNLCNKMESIIWRPIEVSAKSAL 447          
BLAST of EH406283 vs. ExPASy Swiss-Prot
Match: CIPKO_ARATH (CBL-interacting serine/threonine-protein kinase 24 OS=Arabidopsis thaliana GN=CIPK24 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.046e-11
Identity = 29/55 (52.73%), Postives = 42/55 (76.36%), Query Frame = 3
Query:    9 SVILEVFEVAPTFFMVDIQKAAGDAAEYLKFYKNFCSNLEDIIWKPPNESTKAKI 173
            +V++E++EVAP+ FMVD++KAAG+  EY KFYK  CS LE+IIW+      K++I
Sbjct:  386 AVVIEIYEVAPSLFMVDVRKAAGETLEYHKFYKKLCSKLENIIWRATEGIPKSEI 440          
The following BLAST results are available for this feature:
BLAST of EH406283 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
CIPK8_ARATH1.456e-2170.77CBL-interacting serine/threonine-protein kinase 8 ... [more]
CIPK8_ORYSJ5.016e-1453.45CBL-interacting protein kinase 8 OS=Oryza sativa s... [more]
CIPKO_ORYSJ1.906e-1355.36CBL-interacting protein kinase 24 OS=Oryza sativa ... [more]
CIPKO_ARATH1.046e-1152.73CBL-interacting serine/threonine-protein kinase 24... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAB2DB09ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EH406283 ID=EH406283; Name=EH406283; organism=Citrus clementina; type=EST; length=448bp
CTCATTTCTCAGTTATACTGGAAGTTTTTGAAGTGGCTCCCACATTTTTT
ATGGTTGACATTCAGAAAGCAGCTGGAGATGCTGCTGAATATCTGAAGTT
CTACAAGAACTTTTGCAGTAATCTTGAGGATATCATCTGGAAGCCGCCTA
ATGAATCAACTAAAGCAAAGATCACCAACTCAAAGAGTAAAAAGCGTTGA
TTTCTCTGTCGCCAATTAGAGTTTGACGCTCAAGTTATTAAACATAAATT
AGGGAAAAAGAAAAAGAAAACATAAAAATATTATTGTTTTGTATGGTTAG
TGTTTGTAACAACTGACAATAATACTTTATGAGATTAGATGAGTATATAT
ACTTTATGAGATTAGATGAATATATATATATATATATCTGTAACTAACTG
TTACTTTCAGAAAGAAAATTAGTCAAATCATGAAATCATAGTTCTTCG
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