EH406288

Overview
NameEH406288
Unique NameEH406288
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length500
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9903 contig Ccv1_Contig9903:6..505. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of EH406288 vs. ExPASy Swiss-Prot
Match: HMCS_ARATH (Hydroxymethylglutaryl-CoA synthase OS=Arabidopsis thaliana GN=HMGS PE=2 SV=2)

HSP 1 Score: 130.954 bits (328), Expect = 3.070e-30
Identity = 66/92 (71.74%), Postives = 75/92 (81.52%), Query Frame = 3 
Query:   15 PFSLSNILSVMNVAGKLKSRHEFPPEKFVEVMKLMEHRYGAKDFVTSKDS--SLLAPGTYYLTEVDSMYRRFYAKKPADATTCENGSLANGH 284
            PFS+SNI SVM+V GKLK+RHE+ PEKFVE MKLMEHRYGAKDFVT+K+    LLAPGTYYL EVDS+YRRFY KK       E+GS+ANGH
Sbjct:  376 PFSISNIASVMDVGGKLKARHEYAPEKFVETMKLMEHRYGAKDFVTTKEGIIDLLAPGTYYLKEVDSLYRRFYGKKG------EDGSVANGH 461
The following BLAST results are available for this feature:
BLAST of EH406288 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
HMCS_ARATH3.070e-3071.74Hydroxymethylglutaryl-CoA synthase OS=Arabidopsis ... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAB2DC03ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EH406288 ID=EH406288; Name=EH406288; organism=Citrus clementina; type=EST; length=500bp
GTGAAGGTCATCATCCCTTCAGCTTGTCAAACATCCTATCTGTTATGAAT
GTTGCAGGGAAGTTGAAATCAAGGCATGAGTTTCCCCCAGAGAAGTTTGT
GGAAGTCATGAAGCTAATGGAGCATAGATATGGAGCCAAAGACTTTGTAA
CAAGCAAAGACAGTAGCCTTTTGGCTCCAGGAACATACTATCTCACTGAA
GTTGACTCCATGTACCGGAGATTCTATGCCAAGAAGCCTGCAGATGCTAC
CACCTGCGAGAATGGGTCACTTGCAAATGGTCACTAAGGGTGATCAAATT
ATTATTTGTATCGCCAGAATTTGATTCATCCTGTTCAATTGTTGTTTTTA
ATTAAGCAGATTGGTGTTGCCAGTACTTAAAAAATATCCGTGCCTTGAGT
TTGTGATGCAAAAGCAAATAGTAGTTGTTCGTCTGCAGGCATGCGATCAG
TGGTGAATTGTTTTCTTTGTAATAAAAGTTTCCGAAATGCCTTGATTTAA
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