FC868494

Overview
NameFC868494
Unique NameFC868494
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9338 contig Ccv1_Contig9338:1..699. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868494 vs. ExPASy Swiss-Prot
Match: RFS2_ARATH (Probable galactinol--sucrose galactosyltransferase 2 OS=Arabidopsis thaliana GN=RFS2 PE=2 SV=2)

HSP 1 Score: 273.863 bits (699), Expect = 5.892e-73
Identity = 129/173 (74.57%), Postives = 145/173 (83.82%), Query Frame = 2
Query:  179 MTVAPNISISDGNLVVHGKTILTGVPDNIILTPGNGVGLVAGAFIGATASHSKSLHVFPMGVLEDLRFMCCFRFKLWWMTQRMGTCGKDVPLETQFMLVESKDNSESDQDDGPTIYTVFLPLLEGQFRSALQGNENNEIQICLESGDNAVETNQGLYLVYTHAGPNPFESISQ 697
            MT+  NIS+ + NLVV GKTILT +PDNIILTP  G G V+G+FIGAT   SKSLHVFP+GVLE LRFMCCFRFKLWWMTQRMG+CGKD+PLETQFML+ESKD  E + DD PT+YTVFLPLLEGQFR+ LQGNE NEI+IC ESGD AVET+QG +LVY HAG NPFE I Q
Sbjct:    1 MTITSNISVQNDNLVVQGKTILTKIPDNIILTPVTGNGFVSGSFIGATFEQSKSLHVFPIGVLEGLRFMCCFRFKLWWMTQRMGSCGKDIPLETQFMLLESKDEVEGNGDDAPTVYTVFLPLLEGQFRAVLQGNEKNEIEICFESGDKAVETSQGTHLVYVHAGTNPFEVIRQ 173          
BLAST of FC868494 vs. ExPASy Swiss-Prot
Match: RFS1_ARATH (Probable galactinol--sucrose galactosyltransferase 1 OS=Arabidopsis thaliana GN=RFS1 PE=2 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 3.716e-51
Identity = 95/173 (54.91%), Postives = 127/173 (73.41%), Query Frame = 2
Query:  179 MTVAPNISISDGNLVVHGKTILTGVPDNIILTPGNGVGLVAGAFIGATASHSKSLHVFPMGVLEDLRFMCCFRFKLWWMTQRMGTCGKDVPLETQFMLVESKDNSESDQDDGPTIYTVFLPLLEGQFRSALQGNENNEIQICLESGDNAVETNQGLYLVYTHAGPNPFESISQ 697
            MTV   IS++D +LVV G  +L GVP+N+++TP +G  L+ GAFIG T+  + S  VF +G LEDLRFMC FRFKLWWMTQRMGT GK++P ETQF++VE+   S+    D  + Y VFLP+LEG FR+ LQGNE NE++ICLESGD  V+  +G +LV+  AG +PF+ I++
Sbjct:    1 MTVGAGISVTDSDLVVLGHRVLHGVPENVLVTPASGNALIDGAFIGVTSDQTGSHRVFSLGKLEDLRFMCVFRFKLWWMTQRMGTNGKEIPCETQFLIVEANQGSDLGGRDQSSSYVVFLPILEGDFRAVLQGNEANELEICLESGDPTVDQFEGSHLVFVAAGSDPFDVITK 173          
BLAST of FC868494 vs. ExPASy Swiss-Prot
Match: RFS6_ARATH (Probable galactinol--sucrose galactosyltransferase 6 OS=Arabidopsis thaliana GN=RFS6 PE=2 SV=2)

HSP 1 Score: 199.519 bits (506), Expect = 1.412e-50
Identity = 95/178 (53.37%), Postives = 126/178 (70.79%), Query Frame = 2
Query:  179 MTVAPNISISDGNLVVHGKTILTGVPDNIILTPGNGVGLVAGAFIGATASHSKSLHVFPMGVLEDLRFMCCFRFKLWWMTQRMGTCGKDVPLETQFMLVESKDNS--ESDQDDG----PTIYTVFLPLLEGQFRSALQGNENNEIQICLESGDNAVETNQGLYLVYTHAGPNPFESIS 694
            MT+ P + ISDGNL++  +TILTGVPDN+I T  +  G V G F+GA  +  +S H+ P+G L + RFM CFRFKLWWM QRMG  G+D+P ETQF+LVES D S  ESD  +G      +YTVFLPL+EG FRS LQGN N+E+++CLESGD   + +   + +Y HAG +PF++I+
Sbjct:    1 MTIKPAVRISDGNLIIKNRTILTGVPDNVITTSASEAGPVEGVFVGAVFNKEESKHIVPIGTLRNSRFMSCFRFKLWWMAQRMGEMGRDIPYETQFLLVESNDGSHLESDGANGVECNQKVYTVFLPLIEGSFRSCLQGNVNDEVELCLESGDVDTKRSSFTHSLYIHAGTDPFQTIT 178          
BLAST of FC868494 vs. ExPASy Swiss-Prot
Match: RFS5_ARATH (Probable galactinol--sucrose galactosyltransferase 5 OS=Arabidopsis thaliana GN=RFS5 PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.194e-27
Identity = 64/172 (37.21%), Postives = 100/172 (58.14%), Query Frame = 2
Query:  203 ISDGNLVVHGKTILTGVPDNIILTPG------NGVGL--VAGAFIGATAS-HSKSLHVFPMGVLEDLRFMCCFRFKLWWMTQRMGTCGKDVPLETQFMLVESKDNSESDQDDGPTIYTVFLPLLEGQFRSALQGNENNEIQICLESGDNAVETNQGLYLVYTHAGPNPFESI 691
            + D  L+ +G+ +LT VP N+ LT        +GV L   AG+FIG       KS HV  +G L+++RFM  FRFK+WW T  +G+ G+D+  ETQ ++++   +           Y + LPLLEG FRS+ Q  E++++ +C+ESG   V  ++   +VY HAG +PF+ +
Sbjct:   24 LEDSTLLANGQVVLTDVPVNVTLTSSPYLVDKDGVPLDVSAGSFIGFNLDGEPKSHHVASIGKLKNIRFMSIFRFKVWWTTHWVGSNGRDIENETQIIILDQSGSDSGPGSGSGRPYVLLLPLLEGSFRSSFQSGEDDDVAVCVESGSTEVTGSEFRQIVYVHAGDDPFKLV 195          
BLAST of FC868494 vs. ExPASy Swiss-Prot
Match: RFS_ORYSJ (Galactinol--sucrose galactosyltransferase OS=Oryza sativa subsp. japonica GN=RFS PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.089e-26
Identity = 67/175 (38.29%), Postives = 95/175 (54.29%), Query Frame = 2
Query:  191 PNISISDGNLVVHGKTILTGVPDNIILTPGNGV-------GLVAGAFIGATASHSKSLHVFPMGVLEDLRFMCCFRFKLWWMTQRMGTCGKDVPLETQFMLVESKDNSESDQDDGPTIYTVFLPLLEGQFRSALQ-GNENNEIQICLESGDNAVETNQGLYLVYTHAGPNPFESI 691
            P  ++   +L V G   L  VP NI LTP + +          AG+F+G  A  +K  HV P+G L D RFM  FRFK+WW T  +GT G+DV  ETQ M+++      S    GP  Y + LP++EG FR+ L+ G   + + + LESG + V  +     VY HAG +PF+ +
Sbjct:   26 PRFTLKGKDLAVDGHPFLLDVPANIRLTPASTLVPNSDVPAAAAGSFLGFDAPAAKDRHVVPIGKLRDTRFMSIFRFKVWWTTHWVGTNGRDVENETQMMILDQSGTKSS--PTGPRPYVLLLPIVEGPFRACLESGKAEDYVHMVLESGSSTVRGSVFRSAVYLHAGDDPFDLV 198          
BLAST of FC868494 vs. ExPASy Swiss-Prot
Match: RFS_PEA (Galactinol--sucrose galactosyltransferase OS=Pisum sativum GN=RFS PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.058e-17
Identity = 56/192 (29.17%), Postives = 90/192 (46.88%), Query Frame = 2
Query:  188 APNISIS---DGNLVVHGKTILTGVPDNIILTP-------------------GNGVGLVAGAFIGATASHSKSLHVFPMGVLEDLRFMCCFRFKLWWMTQRMGTCGKDVPLETQFMLVESKDNSESDQDDGPTIYTVFLPLLEGQFRSALQGNENNEIQICLESGDNAVETNQGLYLVYTHAGPNPFESISQ 697
            +P +SIS     N +V+G   LT VP NI  T                     N      G F+G   + +KS HV P+G L+ ++F   FRFK+WW T  +GT G ++  ETQ ++++   +           Y + LP+LE  FR++LQ   N+ + + +ESG   V  +     +Y H   +P+  + +
Sbjct:   24 SPLLSISLDQSRNFLVNGHPFLTQVPPNITTTTTSTPSPFLDFKSNKDTIANNNNTLQQQGCFVGFNTTEAKSHHVVPLGKLKGIKFTSIFRFKVWWTTHWVGTNGHELQHETQILILDKNISLGRP-------YVLLLPILENSFRTSLQPGLNDYVDMSVESGSTHVTGSTFKACLYLHLSNDPYRLVKE 208          
BLAST of FC868494 vs. ExPASy Swiss-Prot
Match: RFS4_ARATH (Probable galactinol--sucrose galactosyltransferase 4 OS=Arabidopsis thaliana GN=RFS4 PE=2 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 6.621e-16
Identity = 53/193 (27.46%), Postives = 85/193 (44.04%), Query Frame = 2
Query:  173 SKMTVAPN-ISISDGNLVVHGKT-ILTGVPDNIILTPGNGVGLVA----------------GAFIGATASHSKSLHVFPMGVLEDLRFMCCFRFKLWWMTQRMGTCGKDVPLETQFMLVESKDNSESDQDDGPTIYTVFLPLLEGQFRSALQGNENNEIQICLESGDNAVETNQGLYLVYTHAGPNPFESISQ 697
            +K  + PN  ++S+G+L     T IL  VP N+  TP +   +                  G F+G T           +G  ED  F+  FRFK+WW T  +G  G D+  ETQ+++++  +            Y   +P +EG FR++L   E   + IC ESG   V+ +    + Y H   NP+  + +
Sbjct:   25 TKPILQPNSFNLSEGSLCAKDSTPILFDVPQNVTFTPFSSHSISTDAPLPILLRVQANAHKGGFLGFTKESPSDRLTNSLGRFEDREFLSLFRFKMWWSTAWIGKSGSDLQAETQWVMLKIPEIDS---------YVAIIPTIEGAFRASLTPGEKGNVLICAESGSTKVKESSFKSIAYIHICDNPYNLMKE 208          
BLAST of FC868494 vs. ExPASy Swiss-Prot
Match: STSYN_PEA (Stachyose synthase OS=Pisum sativum GN=STS1 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.852e-13
Identity = 40/132 (30.30%), Postives = 64/132 (48.48%), Query Frame = 2
Query:  302 GAFIGATASHSKSLHVFPMGVLEDLRFMCCFRFKLWWMTQRMGTCGKDVPLETQFMLVESKDNSESDQDDGPTIYTVFLPLLEGQFRSALQGNENNEIQICLESGDNAVETNQGLYLVYTHAGPNPFESISQ 697
            G F G +        +  +G      F+  FRFK WW TQ +G  G D+ +ETQ++L+E  +            Y V +P++E  FRSAL    N+ ++I  ESG   V+ +    + Y H   NP++ + +
Sbjct:   72 GGFFGFSHETPSDRLMNSIGSFNGKDFLSIFRFKTWWSTQWIGKSGSDLQMETQWILIEVPETKS---------YVVIIPIIEKCFRSALFPGFNDHVKIIAESGSTKVKESTFNSIAYVHFSENPYDLMKE 194          
The following BLAST results are available for this feature:
BLAST of FC868494 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
RFS2_ARATH5.892e-7374.57Probable galactinol--sucrose galactosyltransferase... [more]
RFS1_ARATH3.716e-5154.91Probable galactinol--sucrose galactosyltransferase... [more]
RFS6_ARATH1.412e-5053.37Probable galactinol--sucrose galactosyltransferase... [more]
RFS5_ARATH2.194e-2737.21Probable galactinol--sucrose galactosyltransferase... [more]
RFS_ORYSJ1.089e-2638.29Galactinol--sucrose galactosyltransferase OS=Oryza... [more]
RFS_PEA2.058e-1729.17Galactinol--sucrose galactosyltransferase OS=Pisum... [more]
RFS4_ARATH6.621e-1627.46Probable galactinol--sucrose galactosyltransferase... [more]
STSYN_PEA6.852e-1330.30Stachyose synthase OS=Pisum sativum GN=STS1 PE=1 S... [more]
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Properties
Property NameValue
Genbank descriptionC31001A09EF AbioticL1 Citrus clementina cDNA clone C31001A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868494 ID=FC868494; Name=FC868494; organism=Citrus clementina; type=EST; length=699bp
GACTTCATAATTGAAAGTCTCGAGCGCTTGTGCTTCGCTTTCTTTTTCTT
TCATTTTCCTCTCACAGAAGAGAGCATTCCGTTGCGACGGGGAATCTCTC
ACTATCTCTTTGGAGCTCTCAACGAAAGAGTAATTTCGTCTCCCGTCGAA
CTGATTATCCGTTCTTAGGCGCTCGAAAATGACGGTCGCCCCGAACATCT
CCATCAGTGATGGAAACTTGGTGGTTCATGGCAAGACCATATTGACTGGA
GTGCCCGACAACATTATTCTGACTCCCGGTAATGGCGTGGGGCTTGTTGC
CGGTGCTTTCATCGGTGCCACGGCTTCTCATAGCAAAAGCCTCCATGTCT
TCCCCATGGGTGTCTTAGAGGATCTCCGGTTTATGTGTTGCTTCCGATTT
AAGTTATGGTGGATGACCCAGAGGATGGGTACATGCGGAAAAGATGTACC
ACTGGAGACTCAATTCATGCTTGTGGAGAGCAAGGATAACTCTGAAAGTG
ATCAGGATGACGGCCCAACTATCTACACTGTATTCCTTCCTCTCCTTGAA
GGCCAGTTCCGTTCCGCGCTGCAAGGCAATGAAAACAATGAGATACAGAT
CTGCCTTGAGAGTGGAGATAATGCTGTTGAAACCAACCAAGGACTTTACC
TTGTCTACACACACGCTGGGCCTAATCCTTTTGAAAGTATCAGCCAAGC
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