FC868501

Overview
NameFC868501
Unique NameFC868501
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length630
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9340 contig Ccv1_Contig9340:1..630. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868501 vs. ExPASy Swiss-Prot
Match: COL2_ARATH (Zinc finger protein CONSTANS-LIKE 2 OS=Arabidopsis thaliana GN=COL2 PE=1 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 7.605e-34
Identity = 70/111 (63.06%), Postives = 78/111 (70.27%), Query Frame = 1
Query:  130 MMKEEXXXXXXXXXXWARVCDTCRAAACTVYCKADMAYLCSACDSRVHVANRVAFRHERVFVCESCEQAPAAFXXXXXXXXXXXXXXXEIHSANPLARRHQRVPILPISGS 462
            M+KEE          WAR CDTCR+AACTVYC+AD AYLC+ CD+RVH ANRVA RHERV VC+SCE APAAF               EIHSANPLARRHQRVPILP+S +
Sbjct:    1 MLKEESNESGT----WARACDTCRSAACTVYCEADSAYLCTTCDARVHAANRVASRHERVRVCQSCESAPAAFLCKADAASLCTACDAEIHSANPLARRHQRVPILPLSAN 107          
BLAST of FC868501 vs. ExPASy Swiss-Prot
Match: COL1_ARATH (Zinc finger protein CONSTANS-LIKE 1 OS=Arabidopsis thaliana GN=COL1 PE=1 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.213e-33
Identity = 66/98 (67.35%), Postives = 75/98 (76.53%), Query Frame = 1
Query:  175 WARVCDTCRAAACTVYCKADMAYLCSACDSRVHVANRVAFRHERVFVCESCEQAPAAFXXXXXXXXXXXXXXXEIHSANPLARRHQRVPILPISGSVY 468
            WA+ CDTCR+AACTVYC+AD AYLCS+CD++VH ANR+A RHERV VC+SCE+APAAF               EIHSANPLARRHQRVPILPIS   Y
Sbjct:    8 WAQACDTCRSAACTVYCRADSAYLCSSCDAQVHAANRLASRHERVRVCQSCERAPAAFFCKADAASLCTTCDSEIHSANPLARRHQRVPILPISEYSY 105          
BLAST of FC868501 vs. ExPASy Swiss-Prot
Match: CONS_ARATH (Zinc finger protein CONSTANS OS=Arabidopsis thaliana GN=CO PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.434e-32
Identity = 68/117 (58.12%), Postives = 79/117 (67.52%), Query Frame = 1
Query:  130 MMKEEXXXXXXXXXXWARVCDTCRAAACTVYCKADMAYLCSACDSRVHVANRVAFRHERVFVCESCEQAPAAFXXXXXXXXXXXXXXXEIHSANPLARRHQRVPILPISGSVYGGRT 480
            M+K+E           AR CDTCR+ ACTVYC AD AYLC +CD++VH ANRVA RH+RV VCESCE+APAAF               E+HSANPLARRHQRVPILPISG+ +   T
Sbjct:    1 MLKQESNDIGSGENNRARPCDTCRSNACTVYCHADSAYLCMSCDAQVHSANRVASRHKRVRVCESCERAPAAFLCEADDASLCTACDSEVHSANPLARRHQRVPILPISGNSFSSMT 117          
BLAST of FC868501 vs. ExPASy Swiss-Prot
Match: COL3_ARATH (Zinc finger protein CONSTANS-LIKE 3 OS=Arabidopsis thaliana GN=COL3 PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 8.428e-25
Identity = 54/123 (43.90%), Postives = 74/123 (60.16%), Query Frame = 1
Query:  178 ARVCDTCRAAACTVYCKADMAYLCSACDSRVHVANRVAFRHERVFVCESCEQAPAAFXXXXXXXXXXXXXXXEIHSANPLARRHQRVPILPISGSVYGGRTGATPXXXXXXXXXXXXAASWLL 546
            +R+CD+C++ A T++C+AD A+LC  CD ++H AN++A RHERV++CE CEQAPA                 +IHSANPL+RRH+RVPI P   +V G    A+              ASWLL
Sbjct:    5 SRLCDSCKSTAATLFCRADAAFLCGDCDGKIHTANKLASRHERVWLCEVCEQAPAHVTCKADAAALCVTCDRDIHSANPLSRRHERVPITPFYDAV-GPAKSASSSVNFVDEDGGDVTASWLL 126          
BLAST of FC868501 vs. ExPASy Swiss-Prot
Match: COL4_ARATH (Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis thaliana GN=COL4 PE=2 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 2.711e-23
Identity = 47/96 (48.96%), Postives = 65/96 (67.71%), Query Frame = 1
Query:  178 ARVCDTCRAAACTVYCKADMAYLCSACDSRVHVANRVAFRHERVFVCESCEQAPAAFXXXXXXXXXXXXXXXEIHSANPLARRHQRVPILPISGSV 465
            +++CD+C++A   +YC+ D A+LC +CDS+VH AN++A RH RV++CE CEQAPA                 +IHSANPLARRH+RVP+ P   SV
Sbjct:    3 SKLCDSCKSATAALYCRPDAAFLCLSCDSKVHAANKLASRHARVWMCEVCEQAPAHVTCKADAAALCVTCDRDIHSANPLARRHERVPVTPFYDSV 98          
BLAST of FC868501 vs. ExPASy Swiss-Prot
Match: COL5_ARATH (Zinc finger protein CONSTANS-LIKE 5 OS=Arabidopsis thaliana GN=COL5 PE=2 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 4.051e-19
Identity = 44/89 (49.44%), Postives = 55/89 (61.80%), Query Frame = 1
Query:  178 ARVCDTCRAAACTVYCKADMAYLCSACDSRVHVANRVAFRHERVFVCESCEQAPAAFXXXXXXXXXXXXXXXEIHSANPLARRHQRVPI 444
            AR CD C++    V+C+ D A+LC ACD+R+H       RHERV+VCE CEQAPAA                +IHSANPLA RH+RVP+
Sbjct:   19 ARSCDACKSVTAAVFCRVDSAFLCIACDTRIHSFT----RHERVWVCEVCEQAPAAVTCKADAAALCVSCDADIHSANPLASRHERVPV 103          
BLAST of FC868501 vs. ExPASy Swiss-Prot
Match: COL13_ARATH (Zinc finger protein CONSTANS-LIKE 13 OS=Arabidopsis thaliana GN=COL13 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.381e-11
Identity = 33/93 (35.48%), Postives = 51/93 (54.84%), Query Frame = 1
Query:  181 RVCDTCRAAACTVYCKADMAYLCSACDSRVHVANRVAFRHERVFVCESCEQAPAAFXXXXXXXXXXXXXXXEIHSANPLARRHQRVPILPISG 459
            R+CD C ++   VYCKAD A LC ACD +VHVAN++  +H R  +C+SC ++P++                + H+A+  +  H R P    +G
Sbjct:   11 RLCDYCDSSVALVYCKADSAKLCLACDKQVHVANQLFAKHFRSLLCDSCNESPSSLFCETERSVLCQNCDWQHHTAS--SSLHSRRPFEGFTG 101          
The following BLAST results are available for this feature:
BLAST of FC868501 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
COL2_ARATH7.605e-3463.06Zinc finger protein CONSTANS-LIKE 2 OS=Arabidopsis... [more]
COL1_ARATH2.213e-3367.35Zinc finger protein CONSTANS-LIKE 1 OS=Arabidopsis... [more]
CONS_ARATH1.434e-3258.12Zinc finger protein CONSTANS OS=Arabidopsis thalia... [more]
COL3_ARATH8.428e-2543.90Zinc finger protein CONSTANS-LIKE 3 OS=Arabidopsis... [more]
COL4_ARATH2.711e-2348.96Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis... [more]
COL5_ARATH4.051e-1949.44Zinc finger protein CONSTANS-LIKE 5 OS=Arabidopsis... [more]
COL13_ARATH2.381e-1135.48Zinc finger protein CONSTANS-LIKE 13 OS=Arabidopsi... [more]
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Properties
Property NameValue
Genbank descriptionC31001B08EF AbioticL1 Citrus clementina cDNA clone C31001B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868501 ID=FC868501; Name=FC868501; organism=Citrus clementina; type=EST; length=630bp
GACGCGTCAGCTCGCAAATCACAATTCACAAACAAGCTGAAACAAAACGT
CGGCGTTTAGAGTGTGAGAGAAAATTTAAAGAATTAAAAAAAAAAAGGGA
GAGAAACAAGAAAACCAACTAATTAAACGATGATGAAAGAGGAGAGCAAC
GACGGCAGTGGAGGAGGAAACAGCTGGGCACGTGTGTGTGACACTTGCAG
GGCAGCTGCATGCACGGTCTACTGCAAAGCTGATATGGCGTATCTTTGCT
CTGCATGCGACTCCAGAGTCCATGTGGCCAATCGTGTCGCCTTTAGACAT
GAGCGCGTGTTCGTGTGCGAGTCCTGCGAACAAGCCCCGGCTGCTTTCTT
ATGCAAGGCGGACGCGGCGTCGCTTTGTGCTGCATGTGACGCTGAGATTC
ACTCAGCAAACCCTCTCGCAAGGCGCCACCAGCGGGTCCCTATTCTTCCG
ATATCTGGCTCGGTGTACGGGGGAAGGACCGGCGCGACGCCGGAGGGAGA
TCATGAGGATGACCAGGACGAGGAAGAAGCGGCTTCGTGGTTGCTGTTGA
GTAATCCTGGGAAGAATTGCGGGTATGGTAATAATGGGAATAATAATGGG
TTTCTGTTTGGTGGGGAAGTTGATGAGTAC
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