FC868505

Overview
NameFC868505
Unique NameFC868505
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length676
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9441 contig Ccv1_Contig9441:57..730. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868505 vs. ExPASy Swiss-Prot
Match: TIF3B_ARATH (Protein TIFY 3B OS=Arabidopsis thaliana GN=TIFY3B PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 8.957e-31
Identity = 78/177 (44.07%), Postives = 104/177 (58.76%), Query Frame = 2
Query:  122 DEVKPKAEAGMEVDDKKKHEVALNDAGSAAGLDLLGNEVFNNTIRATAIPTSGVNATDLAPTQLTIFYGGKVCVFDAIPADKVREIMLIAASSATVTNTSDMKTDNTNCPTSSPVLTRSPSLQSTASALASPRAQSYPVQRNLLCKLQAELPMARRHSLQRFFEKRRDRLVSKNPYP 652
            DE +   E G  V D       +   GS         E   N +R+T I T+      + P QLTIF+GG V VFD +P++KV+EI+ IAA +    N++ +       P SSP L R+PS  ST++ +ASP AQ +P+Q    C+  A+LP+ARRHSLQRF EKRRDRLV+KNPYP
Sbjct:    6 DEPRASVEGGCGVADGDGGAAEIGGTGSV--------EKSINEVRSTEIQTA---EPTVPPNQLTIFFGGSVTVFDGLPSEKVQEILRIAAKAMETKNSTSIS------PVSSPALNRAPSFSSTSN-VASPAAQPFPIQPISFCRSTADLPIARRHSLQRFLEKRRDRLVNKNPYP 164          
BLAST of FC868505 vs. ExPASy Swiss-Prot
Match: TIF3A_ARATH (Protein TIFY 3A OS=Arabidopsis thaliana GN=TIFY3A PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.175e-14
Identity = 61/180 (33.89%), Postives = 87/180 (48.33%), Query Frame = 2
Query:  119 VDEVKPKAEAGMEVDDKKKHEVALNDA---GSAAGLDLLGNEVFNNTIRATAIPTSGVNATDLAPTQLTIFYGGKVCVFDAIPADKVREIMLIAASSATVTNTSDMKTDNTNCPTSSPVLTRSPSLQSTASALASPRAQSYPVQRNLLCKLQAELPMARRHSLQRFFEKRRDRLVSKNPY 649
            V E+   A AG +  +      ALN A    + A L +         +      ++  + + + P+QLTI +GG   VFD IPA+KV+EI+ IAA++          T+  N  + +P L R+ S  S AS +A              C   A++P+ARR SLQRFFEKRR R V   PY
Sbjct:   65 VQEIIRIAFAGKQTKNVTGINPALNRALSFSTVADLPIARRRSLQRFLEKRRDRSTKPDGSMILPSQLTIIFGGSFSVFDGIPAEKVQEILHIAAAAKA--------TETINLTSINPALKRAISF-SNASTVA--------------CVSTADVPIARRRSLQRFFEKRRHRFVHTKPY 221          
BLAST of FC868505 vs. ExPASy Swiss-Prot
Match: TI10B_ARATH (Protein TIFY 10B OS=Arabidopsis thaliana GN=TIFY10B PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.781e-13
Identity = 49/124 (39.52%), Postives = 67/124 (54.03%), Query Frame = 2
Query:  311 LTIFYGGKVCVFDAIPADKVREIMLIAASSATVTNTSDMKTDNTNCPTSSPVLTRSPSLQSTASALASPR--AQSYPVQRNLLCKLQAELPMARRHSLQRFFEKRRDRLVSKNPYPVQIRAKAS 676
            LTIFYGG+V VFD   A+K +E++ +A   +  + T      N N    S        + S+ + + SP   A   P+Q N    L  ELP+ARR SL RF EKR+DR+ SK PY +   A+AS
Sbjct:  120 LTIFYGGRVMVFDDFSAEKAKEVIDLANKGSAKSFTCFTAEVNNNHSAYS-----QKEIASSPNPVCSPAKTAAQEPIQPNP-ASLACELPIARRASLHRFLEKRKDRITSKAPYQIDGSAEAS 237          
BLAST of FC868505 vs. ExPASy Swiss-Prot
Match: TI11A_ARATH (Protein TIFY 11A OS=Arabidopsis thaliana GN=TIFY11A PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.709e-11
Identity = 47/123 (38.21%), Postives = 63/123 (51.22%), Query Frame = 2
Query:  305 TQLTIFYGGKVCVFDAIPADKVREIMLIAASSATVT--NTSDMKTDNTNCPTSSPVLTRSPSLQSTASALASPRAQSYPVQRNLLCKLQAELPMARRHSLQRFFEKRRDRLVSKNPYPVQIRA 667
            +QLTIF+GGKV V++  P DK +EIM +A  +  VT  N      D  N   SS VL   P L          + Q    ++N + +      +ARR SL RFF KR+DR V++ PY V   A
Sbjct:   97 SQLTIFFGGKVLVYNEFPVDKAKEIMEVAKQAKPVTEINIQTPINDENNNNKSSMVL---PDLNEPTDNNHLTKEQQQQQEQNQIVE-----RIARRASLHRFFAKRKDRAVARAPYQVNQNA 211          
The following BLAST results are available for this feature:
BLAST of FC868505 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
TIF3B_ARATH8.957e-3144.07Protein TIFY 3B OS=Arabidopsis thaliana GN=TIFY3B ... [more]
TIF3A_ARATH1.175e-1433.89Protein TIFY 3A OS=Arabidopsis thaliana GN=TIFY3A ... [more]
TI10B_ARATH3.781e-1339.52Protein TIFY 10B OS=Arabidopsis thaliana GN=TIFY10... [more]
TI11A_ARATH2.709e-1138.21Protein TIFY 11A OS=Arabidopsis thaliana GN=TIFY11... [more]
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Properties
Property NameValue
Genbank descriptionC31001C02EF AbioticL1 Citrus clementina cDNA clone C31001C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868505 ID=FC868505; Name=FC868505; organism=Citrus clementina; type=EST; length=676bp
AAGCAAAGGCGAGGAAGCTGCGCGAGAAAATTAGAAAAATTGAAAAAAAA
ATTAGGAGAAGAAGAGGAAGGAGCCTGGAAATTTCTCGAGTTTAATTCAA
ATGGAGGAATTTGGGACTGTTGATGAAGTGAAGCCGAAGGCTGAGGCCGG
AATGGAAGTAGACGATAAGAAGAAGCATGAGGTTGCTCTAAACGACGCCG
GATCTGCTGCAGGGCTTGATTTGTTGGGGAACGAGGTGTTTAACAACACC
ATCAGGGCCACGGCAATCCCAACTTCTGGAGTGAATGCCACGGACCTTGC
TCCAACTCAGCTTACGATCTTCTATGGTGGAAAAGTGTGTGTATTTGATG
CAATTCCGGCAGACAAGGTTCGTGAAATTATGCTTATTGCTGCCTCTTCT
GCCACTGTTACTAACACAAGCGACATGAAGACGGACAATACCAACTGTCC
TACCTCTTCACCAGTTCTAACAAGGTCTCCTTCACTGCAAAGCACTGCAA
GTGCTTTGGCATCACCTCGGGCACAATCATATCCTGTTCAAAGGAATCTC
CTCTGTAAATTGCAAGCTGAACTACCAATGGCAAGGAGGCATTCCCTTCA
GCGATTTTTCGAGAAGCGACGTGACAGGCTGGTGAGCAAGAATCCATATC
CTGTTCAAATCAGAGCAAAAGCTTCT
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