FC868523

Overview
NameFC868523
Unique NameFC868523
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11674 contig Ccv1_Contig11674:77..770. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC868523 vs. ExPASy Swiss-Prot
Match: PGL1B_ARATH (PGR5-like protein 1B, chloroplastic OS=Arabidopsis thaliana GN=PGRL1B PE=1 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 1.493e-60
Identity = 115/146 (78.77%), Postives = 132/146 (90.41%), Query Frame = 2 
Query:  245 GRQFSVRRRSFVLPSKATTDQQGQVEGDEVVDSKILQYCSIDKKEKKSLGELEQEFLQALQAFYYEGKAVMSNEEFDNLKEELMWEGSSVVMLSSAEQKFLEASMAYVAGKPIMSDEEYDKLKQKLKMDGSEIVVEGPRCSLRSRR 682
            GR  S+RRR  +LP KA+TDQ GQV G+EV DSKIL YCSI+K EK+++GE+EQEFLQA+Q+FYYEGKA+MSNEEFDNLKEELMWEGSSVVMLSS EQ+FLEASMAYV+G PI+SDEEYDKLK KLKMDGSEIV EGPRCSLRS++
Sbjct:   34 GRSISLRRRLTLLPLKASTDQSGQVGGEEV-DSKILPYCSINKNEKRTIGEMEQEFLQAMQSFYYEGKAIMSNEEFDNLKEELMWEGSSVVMLSSDEQRFLEASMAYVSGNPILSDEEYDKLKMKLKMDGSEIVCEGPRCSLRSKK 178
[Close]
BLAST of FC868523 vs. ExPASy Swiss-Prot
Match: PGL1A_ARATH (PGR5-like protein 1A, chloroplastic OS=Arabidopsis thaliana GN=PGRL1A PE=1 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 1.950e-60
Identity = 119/192 (61.98%), Postives = 148/192 (77.08%), Query Frame = 2 
Query:  107 MASKVASGFTPQAQRVFAVPVQKPAAALVPFXXXXXXXXXXNTQFSGRQFSVRRRSFVLPSKATTDQQGQVEGDEVVDSKILQYCSIDKKEKKSLGELEQEFLQALQAFYYEGKAVMSNEEFDNLKEELMWEGSSVVMLSSAEQKFLEASMAYVAGKPIMSDEEYDKLKQKLKMDGSEIVVEGPRCSLRSRR 682
            M SK+    T  + R+F+   +KP+++  P                G+  S+RRR F+LP+KATT+Q G V GD V DS +L YCSI+K EKK++GE+EQEFLQALQ+FYY+GKA+MSNEEFDNLKEELMWEGSSVVMLSS EQ+FLEASMAYV+G PI++DEEYDKLK KLK+DGS+IV EGPRCSLRS++
Sbjct:    1 MGSKMLFSLT--SPRLFSAVSRKPSSSFSPSPPSPSSRTQWTQLSPGKSISLRRRVFLLPAKATTEQSGPVGGDNV-DSNVLPYCSINKAEKKTIGEMEQEFLQALQSFYYDGKAIMSNEEFDNLKEELMWEGSSVVMLSSDEQRFLEASMAYVSGNPILNDEEYDKLKLKLKIDGSDIVSEGPRCSLRSKK 189
The following BLAST results are available for this feature:
BLAST of FC868523 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
PGL1B_ARATH1.493e-6078.77PGR5-like protein 1B, chloroplastic OS=Arabidopsis... [more]
PGL1A_ARATH1.950e-6061.98PGR5-like protein 1A, chloroplastic OS=Arabidopsis... [more]
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Properties
Property NameValue
Genbank descriptionC31001E02EF AbioticL1 Citrus clementina cDNA clone C31001E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868523 ID=FC868523; Name=FC868523; organism=Citrus clementina; type=EST; length=694bp
TCACACAAAAAAATCTATCATCTCCATGCATCTCGCTACATCACCAGCTA
CACACTCTATTACTAGTATTTTCACCTGAAACCGAAACTACCATCTCTAT
TTTCAAATGGCTAGCAAAGTAGCCTCTGGTTTTACCCCTCAGGCTCAGCG
CGTCTTCGCTGTCCCTGTGCAAAAGCCAGCTGCAGCCTTGGTTCCTTTTT
CATCCTCTTCAAGGGCTCACTCAAATTCAAATACTCAGTTCAGTGGAAGG
CAGTTTTCTGTTCGACGCAGATCTTTTGTACTGCCCAGCAAGGCTACTAC
TGACCAACAAGGTCAGGTTGAGGGAGATGAGGTAGTCGATAGTAAAATTC
TGCAATATTGTAGCATTGACAAGAAAGAGAAAAAGTCATTGGGTGAACTA
GAACAAGAGTTTCTTCAGGCACTGCAAGCTTTCTATTACGAGGGAAAAGC
TGTTATGTCAAATGAGGAATTTGATAATCTTAAGGAAGAACTGATGTGGG
AAGGAAGCAGCGTCGTCATGCTAAGTTCTGCTGAACAAAAGTTTCTCGAA
GCTTCAATGGCTTATGTGGCTGGGAAACCTATTATGTCGGATGAAGAGTA
TGATAAATTGAAGCAGAAACTAAAGATGGATGGGAGTGAAATTGTGGTTG
AGGGTCCACGGTGCAGTCTCCGTAGCAGAAGGTTTACAGCGACC
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