FC868530

Overview
NameFC868530
Unique NameFC868530
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length674
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9348 contig Ccv1_Contig9348:1..674. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC868530 vs. ExPASy Swiss-Prot
Match: 12KD_FRAAN (Auxin-repressed 12.5 kDa protein OS=Fragaria ananassa PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.085e-28
Identity = 65/121 (53.72%), Postives = 79/121 (65.29%), Query Frame = 2 
Query:   56 MLEKLWDDVVAGPQPDRGLGRLRKITTTPLAVKEGGEAESSSGKFQRSLSMXXXXXXXXXXXXXXXXXXXRKDNVWRSVFHPGSNLATRGIGAEVFDKPTHPNSPTVYDWLYSGETRSKHH 418
            +L+KLWDD+VAGPQP+RGLG LRK+   PL +K+ GE+           S                    RKDNVWRSVFHPGSNL+++ +G +VFD P  PNSPTVYDW+YSGETRSKHH
Sbjct:    3 LLDKLWDDIVAGPQPERGLGMLRKVPQ-PLNLKDEGES-----------SKITMPTTPTTPVTPTTPISARKDNVWRSVFHPGSNLSSKTMGNQVFDSP-QPNSPTVYDWMYSGETRSKHH 110
The following BLAST results are available for this feature:
BLAST of FC868530 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
12KD_FRAAN1.085e-2853.72Auxin-repressed 12.5 kDa protein OS=Fragaria anana... [more]
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Properties
Property NameValue
Genbank descriptionC31001E10EF AbioticL1 Citrus clementina cDNA clone C31001E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868530 ID=FC868530; Name=FC868530; organism=Citrus clementina; type=EST; length=674bp
GACTGAAGAAGAGGTTAAAGATTTCGAAACTAGCAGCTAAATTGTAAATT
TAAAGATGCTAGAGAAGCTTTGGGACGATGTTGTGGCAGGGCCTCAGCCT
GATCGTGGCCTTGGCAGGCTGAGGAAAATCACCACAACACCCTTAGCAGT
CAAAGAGGGTGGTGAGGCGGAGTCGTCGTCGGGCAAGTTCCAGAGGTCTC
TGTCAATGCCAGCGAGTCCAGGGGCACCGTCGACGCCAGTGACGCCGACG
ACGCCGCTGTCGGCGCGTAAGGACAACGTGTGGAGGAGCGTGTTTCACCC
CGGTAGCAACCTTGCTACTAGGGGTATCGGTGCAGAGGTCTTTGACAAGC
CCACACATCCTAACTCTCCCACTGTTTATGACTGGCTTTACAGTGGGGAG
ACTAGGAGCAAGCATCATCACTGAGTGGATGATACGCTCCAGCGATGTAA
ATGAATGTGATGGGTCACCAACTCACCGGATGAGTTGCCTGTAGTCTGTA
GATAGTGTCGTTTCGTTTTGGATTTCGCAACGTGTCCTTGTCGTTTTGTT
AATGCTATTTGTATTACGTGTCCTTCCTATCTAAAGTTTGGTTTTAAAAT
GCTGCTGACTAAAAGTAAACTAAAGACTGTGATGTTTTTATATCATATAA
TTTAATAATTGTATGTGATGTGAG
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