FC868532

Overview
NameFC868532
Unique NameFC868532
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length724
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9349 contig Ccv1_Contig9349:1..725. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868532 vs. ExPASy Swiss-Prot
Match: AFC3_ARATH (Serine/threonine-protein kinase AFC3 OS=Arabidopsis thaliana GN=AFC3 PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 6.164e-23
Identity = 45/109 (41.28%), Postives = 58/109 (53.21%), Query Frame = 3
Query:  210 MEQERTTKRRRLAWDVAPSEAEVENALGFNNLNEKTEVKSVGFVKSDVDSE*FL*AQRALVVGHEGATAAAAKHVSPPRRDDDREGHYVFNLGEYLTPRYKILSKMGEG 536
            M++ER  KR R+ WD AP+E E                                 A+RA++ GH     +  + +SPP RDDDR+GHYVF+L + LTPRYKILSKMGEG
Sbjct:    9 MDKERVRKRPRMTWDEAPAEPE---------------------------------AKRAVIKGH----GSDGRILSPPLRDDDRDGHYVFSLRDNLTPRYKILSKMGEG 80          

HSP 2 Score: 38.1206 bits (87), Expect = 6.164e-23
Identity = 17/22 (77.27%), Postives = 21/22 (95.45%), Query Frame = 1
Query:  658 TQERVAIKVVRSIRKYRDAAMI 723
            T+E VAIK++RSI+KYRDAAMI
Sbjct:   93 TKEYVAIKIIRSIKKYRDAAMI 114          

HSP 3 Score: 32.3426 bits (72), Expect = 6.164e-23
Identity = 12/12 (100.00%), Postives = 12/12 (100.00%), Query Frame = 2
Query:  620 GTFGRVLECWDR 655
            GTFGRVLECWDR
Sbjct:   80 GTFGRVLECWDR 91          
BLAST of FC868532 vs. ExPASy Swiss-Prot
Match: AFC2_ARATH (Serine/threonine-protein kinase AFC2 OS=Arabidopsis thaliana GN=AFC2 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 1.975e-18
Identity = 43/105 (40.95%), Postives = 56/105 (53.33%), Query Frame = 3
Query:  222 RTTKRRRLAWDVAPSEAEVENALGFNNLNEKTEVKSVGFVKSDVDSE*FL*AQRALVVGHEGATAAAAKHVSPPRRDDDREGHYVFNLGEYLTPRYKILSKMGEG 536
            R  KR RL WDV P   + +  +G     E   + S  F  S   S+       +L V         A++ SPP R+DD++GHY+F LG+ LTPRYKI SKMGEG
Sbjct:   17 RPRKRARLGWDVLPQATKAQ--VGMFCGQEIGNISS--FASSGAPSD----NSSSLCV------KGVARNGSPPWREDDKDGHYIFELGDDLTPRYKIYSKMGEG 107          

HSP 2 Score: 33.113 bits (74), Expect = 1.975e-18
Identity = 13/21 (61.90%), Postives = 19/21 (90.48%), Query Frame = 1
Query:  661 QERVAIKVVRSIRKYRDAAMI 723
            +E VA+K+VR ++KYR+AAMI
Sbjct:  121 KEMVAVKIVRGVKKYREAAMI 141          

HSP 3 Score: 32.7278 bits (73), Expect = 1.975e-18
Identity = 11/17 (64.71%), Postives = 15/17 (88.24%), Query Frame = 2
Query:  620 GTFGRVLECWDRQHRSV 670
            GTFG+VLECWDR+ + +
Sbjct:  107 GTFGQVLECWDRERKEM 123          
The following BLAST results are available for this feature:
BLAST of FC868532 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
AFC3_ARATH6.164e-2341.28Serine/threonine-protein kinase AFC3 OS=Arabidopsi... [more]
AFC2_ARATH1.975e-1840.95Serine/threonine-protein kinase AFC2 OS=Arabidopsi... [more]
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Properties
Property NameValue
Genbank descriptionC31001E12EF AbioticL1 Citrus clementina cDNA clone C31001E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868532 ID=FC868532; Name=FC868532; organism=Citrus clementina; type=EST; length=724bp
TGAAGCGCGAAAATCCAATCGTCACGTACGCCCAAAATATTCCCCCAATG
CATAGGAACCCTAATTTCCGAATGCCACCGTCATATCATCTCTCGCACTC
TTATAATTCTGTTCGAATTTTCTACTAATATTCAAAACTATTGAGGAGTT
TTGTGCTGCAGATACTTAGGTTAAAAATCATACAAAGGAATAATAAATAG
CAAACGATGATGGAGCAGGAGCGAACCACTAAACGACGTCGGCTCGCTTG
GGACGTGGCGCCATCGGAGGCAGAGGTCGAAAACGCTCTAGGGTTTAATA
ATTTGAATGAGAAAACCGAAGTAAAAAGTGTGGGTTTCGTTAAATCTGAC
GTGGATTCGGAATGATTTTTATAGGCGCAACGGGCTCTGGTGGTGGGCCA
TGAAGGGGCTACGGCGGCGGCTGCAAAACACGTGTCGCCGCCGAGAAGGG
ACGATGATCGTGAGGGACATTACGTTTTTAATCTCGGCGAATATCTCACC
CCCAGATATAAAATACTTAGCAAAATGGGTGAAGGTTAGCTGTCGAGTCC
CATGCTGTCTACGAGATCTTATGTTTTTGTGATACTGCTTGTCCCATTGA
GCAACTTGCTAGTATTGTAGGCACATTTGGCCGTGTTTTGGAATGTTGGG
ACCGTCAACACAGGAGCGTGTGGCAATCAAGGTAGTCAGAAGTATACGCA
AGTACCGTGATGCTGCAATGATTG
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