FC868536

Overview
NameFC868536
Unique NameFC868536
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length686
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10208 contig Ccv1_Contig10208:413..1098. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868536 vs. ExPASy Swiss-Prot
Match: GME1_ORYSJ (GDP-mannose 3,5-epimerase 1 OS=Oryza sativa subsp. japonica GN=GME-1 PE=1 SV=1)

HSP 1 Score: 459.529 bits (1181), Expect = 7.317e-129
Identity = 217/228 (95.18%), Postives = 225/228 (98.68%), Query Frame = 1
Query:    1 IQSNHSVIMYNNTMISFNMLEASRISGVKRFFYASSACIYPEFKQLETNVSLKESDAWPAEPQDAYGLEKLASEELCKHYTKDFGIECRVGRFHNIYGPFGTWKGGREKAPAAFCRKALTSTDKFEMWGDGLQTRSFTFIDECVEGVLRLTKSDFREPVNIGSDEMVSMNEMAEIVLSFEDKKLPIHHIPGPEGVRGRNSDNTLIKEKLGWAPSMKXKDGLRITYFWI 684
            IQSNHSVIMYNNTMISFNMLEA+RI+GVKRFFYASSACIYPEFKQLETNVSLKESDAWPAEPQDAYGLEKLA+EELCKHYTKDFGIECRVGRFHNIYGPFGTWKGGREKAPAAFCRKA TSTD+FEMWGDGLQTRSFTFIDECVEGVLRLTKSDFREPVNIGSDEMVSMNEMAEI+LSFED++LPIHHIPGPEGVRGRNSDNTLIKEKLGWAP+MK KDGLR TYFWI
Sbjct:  110 IQSNHSVIMYNNTMISFNMLEAARINGVKRFFYASSACIYPEFKQLETNVSLKESDAWPAEPQDAYGLEKLATEELCKHYTKDFGIECRVGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECVEGVLRLTKSDFREPVNIGSDEMVSMNEMAEIILSFEDRELPIHHIPGPEGVRGRNSDNTLIKEKLGWAPTMKLKDGLRFTYFWI 337          
BLAST of FC868536 vs. ExPASy Swiss-Prot
Match: GME1_ORYSI (GDP-mannose 3,5-epimerase 1 OS=Oryza sativa subsp. indica GN=OsI_032456 PE=2 SV=1)

HSP 1 Score: 459.529 bits (1181), Expect = 7.317e-129
Identity = 217/228 (95.18%), Postives = 225/228 (98.68%), Query Frame = 1
Query:    1 IQSNHSVIMYNNTMISFNMLEASRISGVKRFFYASSACIYPEFKQLETNVSLKESDAWPAEPQDAYGLEKLASEELCKHYTKDFGIECRVGRFHNIYGPFGTWKGGREKAPAAFCRKALTSTDKFEMWGDGLQTRSFTFIDECVEGVLRLTKSDFREPVNIGSDEMVSMNEMAEIVLSFEDKKLPIHHIPGPEGVRGRNSDNTLIKEKLGWAPSMKXKDGLRITYFWI 684
            IQSNHSVIMYNNTMISFNMLEA+RI+GVKRFFYASSACIYPEFKQLETNVSLKESDAWPAEPQDAYGLEKLA+EELCKHYTKDFGIECRVGRFHNIYGPFGTWKGGREKAPAAFCRKA TSTD+FEMWGDGLQTRSFTFIDECVEGVLRLTKSDFREPVNIGSDEMVSMNEMAEI+LSFED++LPIHHIPGPEGVRGRNSDNTLIKEKLGWAP+MK KDGLR TYFWI
Sbjct:  110 IQSNHSVIMYNNTMISFNMLEAARINGVKRFFYASSACIYPEFKQLETNVSLKESDAWPAEPQDAYGLEKLATEELCKHYTKDFGIECRVGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECVEGVLRLTKSDFREPVNIGSDEMVSMNEMAEIILSFEDRELPIHHIPGPEGVRGRNSDNTLIKEKLGWAPTMKLKDGLRFTYFWI 337          
BLAST of FC868536 vs. ExPASy Swiss-Prot
Match: GME2_ORYSJ (GDP-mannose 3,5-epimerase 2 OS=Oryza sativa subsp. japonica GN=GME-2 PE=2 SV=2)

HSP 1 Score: 457.218 bits (1175), Expect = 3.631e-128
Identity = 217/228 (95.18%), Postives = 226/228 (99.12%), Query Frame = 1
Query:    1 IQSNHSVIMYNNTMISFNMLEASRISGVKRFFYASSACIYPEFKQLETNVSLKESDAWPAEPQDAYGLEKLASEELCKHYTKDFGIECRVGRFHNIYGPFGTWKGGREKAPAAFCRKALTSTDKFEMWGDGLQTRSFTFIDECVEGVLRLTKSDFREPVNIGSDEMVSMNEMAEIVLSFEDKKLPIHHIPGPEGVRGRNSDNTLIKEKLGWAPSMKXKDGLRITYFWI 684
            IQSNHSVIMYNNTMISFNMLEA+RI+GVKRFFYASSACIYPEFKQL+T VSLKESDAWPAEPQDAYGLEKLA+EELCKHYTKDFGIECRVGRFHNIYGPFGTWKGGREKAPAAFCRKALTSTD+FEMWGDGLQTRSFTFIDECVEGVLRLTKSDFREPVNIGSDEMVSMNEMAEIVLSFE+K+LPIHHIPGPEGVRGRNSDNTLIKEKLGWAP+M+ KDGLRITYFWI
Sbjct:  103 IQSNHSVIMYNNTMISFNMLEAARINGVKRFFYASSACIYPEFKQLDTVVSLKESDAWPAEPQDAYGLEKLATEELCKHYTKDFGIECRVGRFHNIYGPFGTWKGGREKAPAAFCRKALTSTDRFEMWGDGLQTRSFTFIDECVEGVLRLTKSDFREPVNIGSDEMVSMNEMAEIVLSFENKQLPIHHIPGPEGVRGRNSDNTLIKEKLGWAPTMRLKDGLRITYFWI 330          
BLAST of FC868536 vs. ExPASy Swiss-Prot
Match: GME_ARATH (GDP-mannose 3,5-epimerase OS=Arabidopsis thaliana GN=At5g28840 PE=1 SV=1)

HSP 1 Score: 448.743 bits (1153), Expect = 1.292e-125
Identity = 212/229 (92.58%), Postives = 224/229 (97.82%), Query Frame = 1
Query:    1 IQSNHSVIMYNNTMISFNMLEASRISGVKRFFYASSACIYPEFKQLET-NVSLKESDAWPAEPQDAYGLEKLASEELCKHYTKDFGIECRVGRFHNIYGPFGTWKGGREKAPAAFCRKALTSTDKFEMWGDGLQTRSFTFIDECVEGVLRLTKSDFREPVNIGSDEMVSMNEMAEIVLSFEDKKLPIHHIPGPEGVRGRNSDNTLIKEKLGWAPSMKXKDGLRITYFWI 684
            IQSNHSVIMYNNTMISFNM+EA+RI+G+KRFFYASSACIYPEFKQLET NVSLKESDAWPAEPQDAYGLEKLA+EELCKHY KDFGIECR+GRFHNIYGPFGTWKGGREKAPAAFCRKA TSTD+FEMWGDGLQTRSFTFIDECVEGVLRLTKSDFREPVNIGSDEMVSMNEMAE+VLSFE+KKLPIHHIPGPEGVRGRNSDN LIKEKLGWAP+M+ K+GLRITYFWI
Sbjct:  108 IQSNHSVIMYNNTMISFNMIEAARINGIKRFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAYGLEKLATEELCKHYNKDFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECVEGVLRLTKSDFREPVNIGSDEMVSMNEMAEMVLSFEEKKLPIHHIPGPEGVRGRNSDNNLIKEKLGWAPNMRLKEGLRITYFWI 336          
BLAST of FC868536 vs. ExPASy Swiss-Prot
Match: YTCB_BACSU (Uncharacterized UDP-glucose epimerase ytcB OS=Bacillus subtilis GN=ytcB PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.393e-17
Identity = 63/209 (30.14%), Postives = 100/209 (47.85%), Query Frame = 1
Query:   55 MLEASRISGVKRFFYASSACIYPEFK-QLETNVSLKESDAWPAEPQDAYGLEKLASEELCKHYTKDFGIECRVGRFHNIYGPFGTWKGGREKAPAAFCR--KALTSTDKFEMWGDGLQTRSFTFIDECVEGVLRLTKSD--FREPVNIGSDEMVSMNEMAEIVLSFEDKKLPIHHIPGPEGVRGRN-SDNTLIKEKLGWAPSMKXKDGL 663
            +LEA R   ++ F +AS++ +Y E + ++  N SL         P   YG+ KL  E+LC  Y + FGI   + RF  +YGP       R++   AF R  K         ++GDG Q+R FT+I +CV+G+  +        E VNIG  E  S+ ++  ++     +K  +H      G      +D +  K+ L + P+   KDGL
Sbjct:  109 LLEACREHSIQTFVFASTSSVYGEKQGKVSENTSLS--------PLSPYGVTKLTGEKLCHVYKQSFGIPIVILRFFTVYGP-------RQRPDMAFHRLIKQHLQQKPLTIFGDGQQSRDFTYISDCVKGITAVLGKPHLIGETVNIGGAERASVLKVVSLIEDISGRKATLHFSDKIAGEPSNTWADISKAKQLLHYDPATSLKDGL 302          
BLAST of FC868536 vs. ExPASy Swiss-Prot
Match: FCL1_ARATH (GDP-L-fucose synthase 1 OS=Arabidopsis thaliana GN=GER1 PE=1 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 2.872e-16
Identity = 63/230 (27.39%), Postives = 104/230 (45.22%), Query Frame = 1
Query:   34 NTMISFNMLEASRISGVKRFFYASSACIYPEF------KQLETNVSLKESDAWPAEPQDAYGLEKLASEELCKHYTKDFGIECRVGRFHNIYGPFGTWKGGREKAPAAFCRK----ALTSTDKFEMWGDGLQTRSFTFIDECVEG-VLRLTKSDFREPVNIGSDEMVSMNEMAEI---VLSFEDKKLPIHHIPGPEGVRGRNSDNTLIKEKLGWAPSMKXKDGLRITYFW 681
            N  I  N++ ++   GVK+  +  S+CIYP+F      +      SL+ ++ W       Y + K+A  + C+ Y    G +   G   N+YGP   +         A  R+     +   ++  +WG G   R F  +D+  +  V  L +    E VNIGS + V++ E+AE+   V+ FE K         P+G   +  D++ +   LGW P +  +DGL  TY W
Sbjct:   85 NLQIQTNVIHSAYEHGVKKLLFLGSSCIYPKFAPQPIPESALLTASLEPTNEW-------YAIAKIAGIKTCQAYRIQHGWDAISGMPTNLYGPNDNFHPENSHVLPALMRRFHEAKVNGAEEVVVWGTGSPLREFLHVDDLADACVFLLDRYSGLEHVNIGSGQEVTIRELAELVKEVVGFEGKL--GWDCTKPDGTPRKLMDSSKL-ASLGWTPKVSLRDGLSQTYDW 304          
BLAST of FC868536 vs. ExPASy Swiss-Prot
Match: UXS1_DANRE (UDP-glucuronic acid decarboxylase 1 OS=Danio rerio GN=uxs1 PE=2 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 3.751e-16
Identity = 65/222 (29.28%), Postives = 105/222 (47.30%), Query Frame = 1
Query:   34 NTMISFNMLEASRISGVKRFFYASSACIYPEFKQLETNVSLKESDAW----PAEPQDAYGLEKLASEELCKHYTKDFGIECRVGRFHNIYGPFGTWKGGREKAPAAFCRKALTSTDKFEMWGDGLQTRSFTFIDECVEGVLRLTKSDFREPVNIGSDEMVSMNEMAEIVLSFEDKKLPIHHIP-GPEGVRGRNSDNTLIKEKLGWAPSMKXKDGLR--ITYF 678
            NT+ + NML  ++  G  R   AS++ +Y +       V  +  D W    P  P+  Y   K  +E +C  Y K  G+E RV R  N +G       GR    + F  +AL   +   ++G G QTR+F ++ + V G++ L  S+   PVN+G+ E  ++ E A+++ S    +  I  +P   +  + R  D    K  LGW P +  ++GL   I YF
Sbjct:  177 NTIGTLNMLGLAKRVGA-RLLLASTSEVYGD-----PEVHPQNEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGSRMHMNDGR--VVSNFILQALQG-EALTVYGSGSQTRAFQYVSDLVNGLVSLMNSNISSPVNLGNPEEHTILEFAQLIKSLVASRSHIQFLPEAQDDPQRRRPDIRKAKLLLGWEPVVPLEEGLNKTIQYF 389          
BLAST of FC868536 vs. ExPASy Swiss-Prot
Match: FCL2_ORYSJ (Putative GDP-L-fucose synthase 2 OS=Oryza sativa subsp. japonica GN=Os06g0652300 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.899e-16
Identity = 64/221 (28.96%), Postives = 106/221 (47.96%), Query Frame = 1
Query:   34 NTMISFNMLEASRISG-VKRFFYASSACIYPEFKQLETNVSLKESDAWPAEPQDAYGLEKLASEELCKHYTKDFGIECRVGRFHNIYGPFGTWKGGREKAPAA----FCRKALTSTDKFEMWGDGLQTRSFTFIDECVEGVLRL-TKSDFREPVNIGSDEMVSMNEMAEIVLSFED-KKLPIHHIPGPEGVRGRNSDNTLIKEKLGWAPSMKXKDGLRITY 675
            N  I+ N+++A+R  G V++    +S+ IYP      T  S   +   PAE  + Y + K+A  ++C+    ++G++      +N+YGP   +         A    F R  L    +  +WG G   R FT +D+  E V+ L  +    E VN+GS E V++ E+AE V      + +       PEGV  R  D+  ++ KLGW P +  +DG++  Y
Sbjct:  114 NLRITVNVVDAARRCGSVRKLLVLASSTIYPADAPQPTPESALLTGP-PAEGSEWYAIPKIAGIKMCQAVRAEYGLDAIAAAPNNLYGPRHPFPPEHSHVIPALIRRFHRAKLEGAGEVAVWGSGAAAREFTHVDDLAEAVVVLMERYSGEEHVNVGSGEEVTVRELAEAVRGVVGYEGVVAWDAARPEGVARRVVDSGRMR-KLGWEPRVALRDGIQDLY 332          
BLAST of FC868536 vs. ExPASy Swiss-Prot
Match: UXS1_RAT (UDP-glucuronic acid decarboxylase 1 OS=Rattus norvegicus GN=Uxs1 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.862e-15
Identity = 64/222 (28.83%), Postives = 104/222 (46.85%), Query Frame = 1
Query:   34 NTMISFNMLEASRISGVKRFFYASSACIYPEFKQLETNVSLKESDAW----PAEPQDAYGLEKLASEELCKHYTKDFGIECRVGRFHNIYGPFGTWKGGREKAPAAFCRKALTSTDKFEMWGDGLQTRSFTFIDECVEGVLRLTKSDFREPVNIGSDEMVSMNEMAEIVLSFEDKKLPIHHI-PGPEGVRGRNSDNTLIKEKLGWAPSMKXKDGLR--ITYF 678
            NT+ + NML  ++  G  R   AS++ +Y +       V  +  D W    P  P+  Y   K  +E +C  Y K  G+E RV R  N +GP      GR    + F  +AL   +   ++G G QTR+F ++ + V G++ L  S+   PVN+G+ E  ++ E A+++ +       I  +    +  + R  D    K  LGW P +  ++GL   I YF
Sbjct:  179 NTIGTLNMLGLAKRVGA-RLLLASTSEVYGD-----PEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMNDGR--VVSNFILQALQG-EPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNVSSPVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIHYF 391          
BLAST of FC868536 vs. ExPASy Swiss-Prot
Match: UXS1_PONAB (UDP-glucuronic acid decarboxylase 1 OS=Pongo abelii GN=UXS1 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.862e-15
Identity = 64/222 (28.83%), Postives = 104/222 (46.85%), Query Frame = 1
Query:   34 NTMISFNMLEASRISGVKRFFYASSACIYPEFKQLETNVSLKESDAW----PAEPQDAYGLEKLASEELCKHYTKDFGIECRVGRFHNIYGPFGTWKGGREKAPAAFCRKALTSTDKFEMWGDGLQTRSFTFIDECVEGVLRLTKSDFREPVNIGSDEMVSMNEMAEIVLSFEDKKLPIHHI-PGPEGVRGRNSDNTLIKEKLGWAPSMKXKDGLR--ITYF 678
            NT+ + NML  ++  G  R   AS++ +Y +       V  +  D W    P  P+  Y   K  +E +C  Y K  G+E RV R  N +GP      GR    + F  +AL   +   ++G G QTR+F ++ + V G++ L  S+   PVN+G+ E  ++ E A+++ +       I  +    +  + R  D    K  LGW P +  ++GL   I YF
Sbjct:  179 NTIGTLNMLGLAKRVGA-RLLLASTSEVYGD-----PEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMNDGR--VVSNFILQALQG-EPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNVSSPVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIHYF 391          
The following BLAST results are available for this feature:
BLAST of FC868536 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
GME1_ORYSJ7.317e-12995.18GDP-mannose 3,5-epimerase 1 OS=Oryza sativa subsp.... [more]
GME1_ORYSI7.317e-12995.18GDP-mannose 3,5-epimerase 1 OS=Oryza sativa subsp.... [more]
GME2_ORYSJ3.631e-12895.18GDP-mannose 3,5-epimerase 2 OS=Oryza sativa subsp.... [more]
GME_ARATH1.292e-12592.58GDP-mannose 3,5-epimerase OS=Arabidopsis thaliana ... [more]
YTCB_BACSU3.393e-1730.14Uncharacterized UDP-glucose epimerase ytcB OS=Baci... [more]
FCL1_ARATH2.872e-1627.39GDP-L-fucose synthase 1 OS=Arabidopsis thaliana GN... [more]
UXS1_DANRE3.751e-1629.28UDP-glucuronic acid decarboxylase 1 OS=Danio rerio... [more]
FCL2_ORYSJ4.899e-1628.96Putative GDP-L-fucose synthase 2 OS=Oryza sativa s... [more]
UXS1_RAT1.862e-1528.83UDP-glucuronic acid decarboxylase 1 OS=Rattus norv... [more]
UXS1_PONAB1.862e-1528.83UDP-glucuronic acid decarboxylase 1 OS=Pongo abeli... [more]

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Properties
Property NameValue
Genbank descriptionC31001F05EF AbioticL1 Citrus clementina cDNA clone C31001F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868536 ID=FC868536; Name=FC868536; organism=Citrus clementina; type=EST; length=686bp
ATTCAGTCCAACCACTCTGTCATCATGTATAACAATACCATGATCAGCTT
CAACATGCTTGAGGCTTCTAGGATCAGTGGAGTAAAGAGGTTTTTCTATG
CCTCTAGTGCCTGCATCTATCCCGAATTTAAGCAGCTGGAAACTAACGTA
AGCTTGAAGGAGTCTGATGCCTGGCCCGCTGAGCCTCAAGATGCTTATGG
CTTGGAGAAGCTTGCAAGTGAGGAGTTGTGTAAGCACTACACGAAAGACT
TTGGAATTGAGTGTCGTGTTGGAAGATTCCACAATATTTATGGGCCTTTT
GGAACATGGAAAGGTGGAAGGGAAAAAGCTCCTGCTGCTTTTTGCCGAAA
GGCTCTTACTTCAACTGACAAGTTTGAGATGTGGGGAGATGGACTTCAAA
CTCGATCTTTCACCTTCATTGATGAATGTGTTGAAGGTGTGCTCAGATTG
ACGAAGTCAGACTTCCGTGAGCCAGTGAACATTGGTAGTGATGAGATGGT
TAGCATGAACGAGATGGCTGAGATTGTTCTTAGCTTTGAGGACAAGAAGC
TACCTATCCACCACATTCCTGGCCCTGAGGGTGTCCGTGGTCGTAATTCA
GACAACACACTGATCAAAGAGAAGCTTGGTTGGGCACCATCCATGAAGNT
GAAGGATGGGCTGAGAATTACGTATTTCTGGATCAG
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