FC868552

Overview
NameFC868552
Unique NameFC868552
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length643
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9383 contig Ccv1_Contig9383:26..668. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868552 vs. ExPASy Swiss-Prot
Match: IDND_VITVI (L-idonate 5-dehydrogenase OS=Vitis vinifera GN=GSVIVT00012394001 PE=1 SV=2)

HSP 1 Score: 332.798 bits (852), Expect = 9.200e-91
Identity = 162/209 (77.51%), Postives = 181/209 (86.60%), Query Frame = 1
Query:   25 MGKGGMSQGE---KEDGEEVNMAAWLMGVNTLKIQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGA 642
            MGKGG S+     KE GEE NMAAWL+G+ TLKIQP  LPSLGPYDV VR+KAVG+CGSDVH  KT+R A+F+VK+PMVIGHECAG+IE+VGSEVK LV GDRVALEPGISC +C  C+ G+YNLC E K  GSPP +G LANQVVHP++LCFKLPDNVSLEEGAMCEPLSVG+HACRRAN+GPETNVLIMGSGPIGLVTML ARAFGA
Sbjct:    1 MGKGGNSEDAVSGKEHGEE-NMAAWLLGIKTLKIQPYILPSLGPYDVKVRIKAVGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKNLVAGDRVALEPGISCNRCSLCRNGQYNLCREMKFFGSPPTNGSLANQVVHPSNLCFKLPDNVSLEEGAMCEPLSVGIHACRRANVGPETNVLIMGSGPIGLVTMLAARAFGA 208          
BLAST of FC868552 vs. ExPASy Swiss-Prot
Match: DHSO_MOUSE (Sorbitol dehydrogenase OS=Mus musculus GN=Sord PE=1 SV=3)

HSP 1 Score: 201.445 bits (511), Expect = 3.199e-51
Identity = 96/189 (50.79%), Postives = 132/189 (69.84%), Query Frame = 1
Query:   76 NMAAWLMGVNTLKIQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGA 642
            N++  + G   ++++   +P LGP DVL++M +VG+CGSDVH+ +  R+ DFVVK+PMV+GHE AG + KVG  VK L PGDRVA+EPG+     +YCK GRYNL P      +PP  G L     H AD C+KLPD+V+ EEGA+ EPLSVG++ACRR ++     VL+ G+GP+G+VT+L A+A GA
Sbjct:    9 NLSLVVHGPGDIRLENYPIPELGPNDVLLKMHSVGICGSDVHYWEHGRIGDFVVKKPMVLGHEAAGTVTKVGELVKHLKPGDRVAIEPGVPREVDEYCKIGRYNLTPTIFFCATPPDDGNLCRFYKHNADFCYKLPDSVTFEEGALIEPLSVGIYACRRGSVSLGNKVLVCGAGPVGMVTLLVAKAMGA 197          
BLAST of FC868552 vs. ExPASy Swiss-Prot
Match: DHSO_RAT (Sorbitol dehydrogenase OS=Rattus norvegicus GN=Sord PE=1 SV=4)

HSP 1 Score: 200.675 bits (509), Expect = 5.456e-51
Identity = 96/189 (50.79%), Postives = 132/189 (69.84%), Query Frame = 1
Query:   76 NMAAWLMGVNTLKIQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGA 642
            N++  + G   ++++   +P LGP DVL++M +VG+CGSDVH+ +  R+ DFVVK+PMV+GHE AG + KVG  VK L PGDRVA+EPG+     ++CK GRYNL P      +PP  G L     H AD C+KLPD+V+ EEGA+ EPLSVG++ACRR ++     VL+ G+GPIG+VT+L A+A GA
Sbjct:    9 NLSLVVHGPGDIRLENYPIPELGPNDVLLKMHSVGICGSDVHYWEHGRIGDFVVKKPMVLGHEAAGTVTKVGPMVKHLKPGDRVAIEPGVPREIDEFCKIGRYNLTPSIFFCATPPDDGNLCRFYKHSADFCYKLPDSVTFEEGALIEPLSVGIYACRRGSVSLGNKVLVCGAGPIGIVTLLVAKAMGA 197          
BLAST of FC868552 vs. ExPASy Swiss-Prot
Match: DHSO_PONAB (Sorbitol dehydrogenase OS=Pongo abelii GN=SORD PE=2 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 2.073e-50
Identity = 97/189 (51.32%), Postives = 130/189 (68.78%), Query Frame = 1
Query:   76 NMAAWLMGVNTLKIQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGA 642
            N++  + G   L+++   +P  GP +VL+RM +VG+CGSDVH+ +  R+ +F+VK+PMV+GHE +G +EKVGS VK L PGDRVA+EPG      ++CK GRYNL P      +PP  G L     H A  C+KLPDNV+ EEGAM EPLSVG+HACRR  +     VL+ G+GPIG+VT+L A+A GA
Sbjct:    9 NLSLVVHGPGDLRLENYPIPEPGPNEVLLRMHSVGICGSDVHYWEDGRIGNFIVKKPMVLGHEASGTVEKVGSLVKHLKPGDRVAIEPGAPRENDEFCKIGRYNLSPSIFFCATPPDDGNLCRFYKHNAAFCYKLPDNVTFEEGAMIEPLSVGIHACRRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGA 197          
BLAST of FC868552 vs. ExPASy Swiss-Prot
Match: DHSO_MACFA (Sorbitol dehydrogenase OS=Macaca fascicularis GN=SORD PE=2 SV=3)

HSP 1 Score: 198.749 bits (504), Expect = 2.073e-50
Identity = 95/189 (50.26%), Postives = 131/189 (69.31%), Query Frame = 1
Query:   76 NMAAWLMGVNTLKIQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGA 642
            N++  + G   L+++   +P  GP +VL+RM +VG+CGSDVH+ +  R+ +F+VK+PMV+GHE +G +EKVGS VK L PGDRVA+EPG+     ++CK GRYNL P      +PP  G L     H A  C+KLPDNV+ EEGA+ EPLSVG+HACRR  +     VL+ G+GPIG+V++L A+A GA
Sbjct:    9 NLSLVVHGPGDLRLENYPIPEPGPNEVLLRMHSVGICGSDVHYWEEGRIGNFIVKKPMVLGHEASGTVEKVGSLVKHLKPGDRVAIEPGVPRENDEFCKSGRYNLSPSIFFCATPPDDGNLCRFYKHNAAFCYKLPDNVTFEEGALIEPLSVGIHACRRGGVTLGHRVLVCGAGPIGVVSLLVAKAMGA 197          
BLAST of FC868552 vs. ExPASy Swiss-Prot
Match: DHSO_HUMAN (Sorbitol dehydrogenase OS=Homo sapiens GN=SORD PE=1 SV=3)

HSP 1 Score: 198.749 bits (504), Expect = 2.073e-50
Identity = 96/189 (50.79%), Postives = 130/189 (68.78%), Query Frame = 1
Query:   76 NMAAWLMGVNTLKIQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGA 642
            N++  + G   L+++   +P  GP +VL+RM +VG+CGSDVH+ +  R+ +F+VK+PMV+GHE +G +EKVGS VK L PGDRVA+EPG      ++CK GRYNL P      +PP  G L     H A  C+KLPDNV+ EEGA+ EPLSVG+HACRR  +     VL+ G+GPIG+VT+L A+A GA
Sbjct:    9 NLSLVVHGPGDLRLENYPIPEPGPNEVLLRMHSVGICGSDVHYWEYGRIGNFIVKKPMVLGHEASGTVEKVGSSVKHLKPGDRVAIEPGAPRENDEFCKMGRYNLSPSIFFCATPPDDGNLCRFYKHNAAFCYKLPDNVTFEEGALIEPLSVGIHACRRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGA 197          
BLAST of FC868552 vs. ExPASy Swiss-Prot
Match: DHSO_BOVIN (Sorbitol dehydrogenase OS=Bos taurus GN=SORD PE=2 SV=3)

HSP 1 Score: 197.593 bits (501), Expect = 4.619e-50
Identity = 96/189 (50.79%), Postives = 131/189 (69.31%), Query Frame = 1
Query:   76 NMAAWLMGVNTLKIQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGA 642
            N++  + G   L+++   +P  GP +VL++M +VG+CGSDVH+ +  R+ DFVVK+PMV+GHE +G + KVGS V+ L PGDRVA+EPG      ++CK GRYNL P      +PP  G L     H A+ C+KLPDNV+ EEGA+ EPLSVG+HACRRA +     VL+ G+GPIGLV++L A+A GA
Sbjct:    8 NLSLVVHGPGDLRLENYPIPEPGPNEVLLKMHSVGICGSDVHYWQHGRIGDFVVKKPMVLGHEASGTVVKVGSLVRHLQPGDRVAIEPGAPRETDEFCKIGRYNLSPTIFFCATPPDDGNLCRFYKHNANFCYKLPDNVTFEEGALIEPLSVGIHACRRAGVTLGNKVLVCGAGPIGLVSLLAAKAMGA 196          
BLAST of FC868552 vs. ExPASy Swiss-Prot
Match: DHSO_SHEEP (Sorbitol dehydrogenase OS=Ovis aries GN=SORD PE=1 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 8.711e-49
Identity = 95/189 (50.26%), Postives = 130/189 (68.78%), Query Frame = 1
Query:   76 NMAAWLMGVNTLKIQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGA 642
            N++  + G   L+++   +P  GP +VL++M +VG+CGSDVH+ +  R+ DFVVK+PMV+GHE +G + KVGS V+ L PGDRVA++PG      ++CK GRYNL P      +PP  G L     H A+ C+KLPDNV+ EEGA+ EPLSVG+HACRRA +     VL+ G+GPIGLV +L A+A GA
Sbjct:    7 NLSLVVHGPGDLRLENYPIPEPGPNEVLLKMHSVGICGSDVHYWQG-RIGDFVVKKPMVLGHEASGTVVKVGSLVRHLQPGDRVAIQPGAPRQTDEFCKIGRYNLSPTIFFCATPPDDGNLCRFYKHNANFCYKLPDNVTFEEGALIEPLSVGIHACRRAGVTLGNKVLVCGAGPIGLVNLLAAKAMGA 194          
BLAST of FC868552 vs. ExPASy Swiss-Prot
Match: DHSO_BACSU (Sorbitol dehydrogenase OS=Bacillus subtilis GN=gutB PE=1 SV=3)

HSP 1 Score: 187.963 bits (476), Expect = 3.660e-47
Identity = 84/187 (44.92%), Postives = 124/187 (66.31%), Query Frame = 1
Query:   82 AAWLMGVNTLKIQPLELPSLGPYDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGA 642
            AA +     +KI+ L +P +   +VL+++ AVG+CGSD+H+    R+ ++VV++P ++GHECAG I  VGS V     GDRVA+EPG++C +C+ CK GRYNLCP+ + L +PPV G     +    D  F +PD++S EE A+ EP SVG+HA  R  + P + + IMG GP+GL+ +  A+AFGA
Sbjct:   11 AAVMHNTREIKIETLPVPDINHDEVLIKVMAVGICGSDLHYYTNGRIGNYVVEKPFILGHECAGEIAAVGSSVDQFKVGDRVAVEPGVTCGRCEACKEGRYNLCPDVQFLATPPVDGAFVQYIKMRQDFVFLIPDSLSYEEAALIEPFSVGIHAAARTKLQPGSTIAIMGMGPVGLMAVAAAKAFGA 197          
BLAST of FC868552 vs. ExPASy Swiss-Prot
Match: DHSO_SCHPO (Putative sorbitol dehydrogenase OS=Schizosaccharomyces pombe GN=tms1 PE=2 SV=2)

HSP 1 Score: 177.948 bits (450), Expect = 3.787e-44
Identity = 82/165 (49.70%), Postives = 111/165 (67.27%), Query Frame = 1
Query:  148 YDVLVRMKAVGVCGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWQCDYCKGGRYNLCPESKGLGSPPVHGCLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGSGPIGLVTMLGARAFGA 642
            + V V +KA G+CGSDVH+ K   + DF++K+PM++GHE AGV+ +VG  V +L PGD VA+EPG  C  CDYC+ GRYNLCP  +   +PP  G L    +   D C KLP  +S+EEGA+ EP+SV VHA  R N+   + VL+MG G +GL+ M  A+A+GA
Sbjct:   30 HQVKVAIKATGICGSDVHYWKEGGIGDFILKKPMILGHESAGVVVEVGKGVSSLKPGDPVAVEPGCVCRLCDYCRSGRYNLCPHMEFAATPPYDGTLRTYYITTEDFCTKLPKQISVEEGALFEPMSVAVHAMTRGNLKCGSRVLVMGCGTVGLLMMAVAKAYGA 194          
The following BLAST results are available for this feature:
BLAST of FC868552 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 290
Match NameE-valueIdentityDescription
IDND_VITVI9.200e-9177.51L-idonate 5-dehydrogenase OS=Vitis vinifera GN=GSV... [more]
DHSO_MOUSE3.199e-5150.79Sorbitol dehydrogenase OS=Mus musculus GN=Sord PE=... [more]
DHSO_RAT5.456e-5150.79Sorbitol dehydrogenase OS=Rattus norvegicus GN=Sor... [more]
DHSO_PONAB2.073e-5051.32Sorbitol dehydrogenase OS=Pongo abelii GN=SORD PE=... [more]
DHSO_MACFA2.073e-5050.26Sorbitol dehydrogenase OS=Macaca fascicularis GN=S... [more]
DHSO_HUMAN2.073e-5050.79Sorbitol dehydrogenase OS=Homo sapiens GN=SORD PE=... [more]
DHSO_BOVIN4.619e-5050.79Sorbitol dehydrogenase OS=Bos taurus GN=SORD PE=2 ... [more]
DHSO_SHEEP8.711e-4950.26Sorbitol dehydrogenase OS=Ovis aries GN=SORD PE=1 ... [more]
DHSO_BACSU3.660e-4744.92Sorbitol dehydrogenase OS=Bacillus subtilis GN=gut... [more]
DHSO_SCHPO3.787e-4449.70Putative sorbitol dehydrogenase OS=Schizosaccharom... [more]

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Properties
Property NameValue
Genbank descriptionC31001G11EF AbioticL1 Citrus clementina cDNA clone C31001G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868552 ID=FC868552; Name=FC868552; organism=Citrus clementina; type=EST; length=643bp
TGTTTTTGAAGAGTTCAAGCAAATATGGGCAAGGGAGGGATGTCACAAGG
AGAAAAGGAAGATGGAGAAGAAGTTAACATGGCAGCTTGGCTTATGGGTG
TCAACACCCTCAAGATTCAGCCTTTGGAGCTTCCTTCTCTGGGACCTTAT
GATGTTTTAGTCAGGATGAAAGCCGTTGGTGTTTGTGGAAGTGATGTGCA
TTTTCTCAAGACCTTGAGGCTTGCCGATTTTGTAGTGAAAGAGCCTATGG
TGATCGGGCATGAGTGTGCTGGGGTCATAGAGAAGGTGGGAAGCGAGGTG
AAGACTTTGGTGCCCGGTGACCGTGTGGCCCTGGAACCAGGGATCAGCTG
CTGGCAATGTGATTACTGCAAAGGAGGTCGATACAATTTGTGTCCAGAGT
CGAAAGGTCTTGGAAGTCCGCCAGTTCATGGTTGTCTGGCTAATCAGGTG
GTGCATCCTGCAGACCTATGTTTTAAGCTGCCCGACAATGTCAGCCTGGA
GGAAGGGGCTATGTGTGAGCCCTTGAGTGTTGGTGTTCATGCCTGCCGCC
GTGCCAATATCGGTCCTGAGACAAATGTGCTTATCATGGGATCAGGGCCC
ATAGGACTTGTCACAATGCTAGGAGCTCGTGCTTTTGGAGCTC
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