FC868564

Overview
NameFC868564
Unique NameFC868564
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3361 contig Ccv1_Contig3361:42..751. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868564 vs. ExPASy Swiss-Prot
Match: CD48D_ARATH (Cell division control protein 48 homolog D OS=Arabidopsis thaliana GN=CDC48D PE=1 SV=1)

HSP 1 Score: 392.889 bits (1008), Expect = 8.996e-109
Identity = 189/212 (89.15%), Postives = 202/212 (95.28%), Query Frame = 2
Query:   74 MSNQAESSDAKGTKRDFSTAILERKKAPNRLVVDEAINDDNSVVVLHPDTMEKLQFFRGDTILIKGKKRKDTVCIALADDTCEEPKIRMNKVVRSNLRVRLGDVVSVHQCADVKYGKRVHILPVDDTIEGVTGNLFDAYLKPYFTEAYRPVRKGDLFLVRGGMRSVEFKVIETDPPEYCVVAPDTEIFCEGEPVRSGDENRLDEVGYDDVGG 709
            M+NQAESSD+KGTK+DFSTAILE+KKA NRLVVDEAINDDNSVV LHPDTMEKLQ FRGDTILIKGKKRKDTVCIALAD+TC+EPKIRMNKVVRSNLRVRLGDV+SVHQC DVKYG RVHILP+DDTIEGV+GN+FDAYLKPYF EAYRPVRKGDLFLVRGGMRS+EFKVIETDP EYCVVAPDTEIFCEGEP++  DE RLDEVGYDDVGG
Sbjct:    1 MANQAESSDSKGTKKDFSTAILEKKKAANRLVVDEAINDDNSVVSLHPDTMEKLQLFRGDTILIKGKKRKDTVCIALADETCDEPKIRMNKVVRSNLRVRLGDVISVHQCPDVKYGNRVHILPLDDTIEGVSGNIFDAYLKPYFLEAYRPVRKGDLFLVRGGMRSIEFKVIETDPAEYCVVAPDTEIFCEGEPIKREDEERLDEVGYDDVGG 212          
BLAST of FC868564 vs. ExPASy Swiss-Prot
Match: CD48E_ARATH (Cell division control protein 48 homolog E OS=Arabidopsis thaliana GN=CDC48E PE=2 SV=2)

HSP 1 Score: 391.349 bits (1004), Expect = 2.617e-108
Identity = 193/212 (91.04%), Postives = 201/212 (94.81%), Query Frame = 2
Query:   74 MSNQAESSDAKGTKRDFSTAILERKKAPNRLVVDEAINDDNSVVVLHPDTMEKLQFFRGDTILIKGKKRKDTVCIALADDTCEEPKIRMNKVVRSNLRVRLGDVVSVHQCADVKYGKRVHILPVDDTIEGVTGNLFDAYLKPYFTEAYRPVRKGDLFLVRGGMRSVEFKVIETDPPEYCVVAPDTEIFCEGEPVRSGDENRLDEVGYDDVGG 709
            MSN+ ESSD+K TK+DFSTAILERKK+PNRLVVDEAINDDNSVV LHP TMEKLQ FRGDTILIKGKKRKDTVCIALAD+TCEEPKIRMNKVVRSNLRVRLGDV+SVHQC DVKYGKRVHILPVDDT+EGVTGNLFDAYLKPYF EAYRPVRKGDLFLVRGGMRSVEFKVIETDP EYCVVAPDTEIFCEGEPV+  DE RLDEVGYDDVGG
Sbjct:    1 MSNEPESSDSK-TKKDFSTAILERKKSPNRLVVDEAINDDNSVVSLHPTTMEKLQLFRGDTILIKGKKRKDTVCIALADETCEEPKIRMNKVVRSNLRVRLGDVISVHQCPDVKYGKRVHILPVDDTVEGVTGNLFDAYLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPAEYCVVAPDTEIFCEGEPVKREDEERLDEVGYDDVGG 211          
BLAST of FC868564 vs. ExPASy Swiss-Prot
Match: CD48A_ARATH (Cell division control protein 48 homolog A OS=Arabidopsis thaliana GN=CDC48A PE=1 SV=1)

HSP 1 Score: 386.726 bits (992), Expect = 6.447e-107
Identity = 191/212 (90.09%), Postives = 200/212 (94.34%), Query Frame = 2
Query:   74 MSNQAESSDAKGTKRDFSTAILERKKAPNRLVVDEAINDDNSVVVLHPDTMEKLQFFRGDTILIKGKKRKDTVCIALADDTCEEPKIRMNKVVRSNLRVRLGDVVSVHQCADVKYGKRVHILPVDDTIEGVTGNLFDAYLKPYFTEAYRPVRKGDLFLVRGGMRSVEFKVIETDPPEYCVVAPDTEIFCEGEPVRSGDENRLDEVGYDDVGG 709
            MS  AESSD+K +K+DFSTAILERKK+PNRLVVDEAINDDNSVV LHP TMEKLQ FRGDTILIKGKKRKDTVCIALAD+TCEEPKIRMNKVVRSNLRVRLGDV+SVHQC DVKYGKRVHILPVDDT+EGVTGNLFDAYLKPYF EAYRPVRKGDLFLVRGGMRSVEFKVIETDP EYCVVAPDTEIFCEGEPV+  DE RLD+VGYDDVGG
Sbjct:    1 MSTPAESSDSK-SKKDFSTAILERKKSPNRLVVDEAINDDNSVVSLHPATMEKLQLFRGDTILIKGKKRKDTVCIALADETCEEPKIRMNKVVRSNLRVRLGDVISVHQCPDVKYGKRVHILPVDDTVEGVTGNLFDAYLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPAEYCVVAPDTEIFCEGEPVKREDEERLDDVGYDDVGG 211          
BLAST of FC868564 vs. ExPASy Swiss-Prot
Match: CDC48_SOYBN (Cell division cycle protein 48 homolog OS=Glycine max GN=CDC48 PE=2 SV=1)

HSP 1 Score: 386.341 bits (991), Expect = 8.420e-107
Identity = 186/212 (87.74%), Postives = 197/212 (92.92%), Query Frame = 2
Query:   74 MSNQAESSDAKGTKRDFSTAILERKKAPNRLVVDEAINDDNSVVVLHPDTMEKLQFFRGDTILIKGKKRKDTVCIALADDTCEEPKIRMNKVVRSNLRVRLGDVVSVHQCADVKYGKRVHILPVDDTIEGVTGNLFDAYLKPYFTEAYRPVRKGDLFLVRGGMRSVEFKVIETDPPEYCVVAPDTEIFCEGEPVRSGDENRLDEVGYDDVGG 709
            MS Q ESSD K  K+DFSTAILERKK+PNRLVVDEA+NDDNSVV +HP TMEKLQ FRGDTILIKGKKRKDT+CIALAD+ CEEPKIRMNKVVRSNLRVRLGDVVSVHQC DVKYGKRVHILP+DDTIEGVTGNLFDA+LKPYF EAYRPVRKGDLFLVRGGMRSVEFKV+ETDP EYCVVAPDTEIFCEGEP++  DE RLDEVGYDDVGG
Sbjct:    1 MSQQGESSDPKSGKKDFSTAILERKKSPNRLVVDEAVNDDNSVVTMHPQTMEKLQLFRGDTILIKGKKRKDTICIALADENCEEPKIRMNKVVRSNLRVRLGDVVSVHQCPDVKYGKRVHILPIDDTIEGVTGNLFDAFLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVVETDPGEYCVVAPDTEIFCEGEPLKREDEERLDEVGYDDVGG 212          
BLAST of FC868564 vs. ExPASy Swiss-Prot
Match: CDC48_CAPAN (Cell division cycle protein 48 homolog OS=Capsicum annuum GN=CAFP PE=2 SV=1)

HSP 1 Score: 378.637 bits (971), Expect = 1.756e-104
Identity = 185/212 (87.26%), Postives = 198/212 (93.40%), Query Frame = 2
Query:   74 MSNQAESSDAKGTKRDFSTAILERKKAPNRLVVDEAINDDNSVVVLHPDTMEKLQFFRGDTILIKGKKRKDTVCIALADDTCEEPKIRMNKVVRSNLRVRLGDVVSVHQCADVKYGKRVHILPVDDTIEGVTGNLFDAYLKPYFTEAYRPVRKGDLFLVRGGMRSVEFKVIETDPPEYCVVAPDTEIFCEGEPVRSGDENRLDEVGYDDVGG 709
            M++QAESSD+K  K+DFSTAILERKKA NRLVVDEA+NDDNSVV LHP TMEKLQ FRGDTILIKGKKRKDTV IALAD+TC+EPKIRMNKVVRSNLRVRLGDVVSVHQC DVKYGKRVHILP+DDTIEG+TG+LFDA+LKPYF EAYRP+RKGD FLVRGGMRSVEFKVIETDP EYCVVAPDTEIFCEGEPV+  DE RLDEVGYDDVGG
Sbjct:    1 MTDQAESSDSKNAKKDFSTAILERKKAANRLVVDEAVNDDNSVVALHPATMEKLQLFRGDTILIKGKKRKDTVVIALADETCDEPKIRMNKVVRSNLRVRLGDVVSVHQCPDVKYGKRVHILPIDDTIEGLTGDLFDAFLKPYFLEAYRPLRKGDNFLVRGGMRSVEFKVIETDPGEYCVVAPDTEIFCEGEPVKREDEERLDEVGYDDVGG 212          
BLAST of FC868564 vs. ExPASy Swiss-Prot
Match: TERA_RAT (Transitional endoplasmic reticulum ATPase OS=Rattus norvegicus GN=Vcp PE=1 SV=3)

HSP 1 Score: 311.612 bits (797), Expect = 2.636e-84
Identity = 144/209 (68.90%), Postives = 177/209 (84.69%), Query Frame = 2
Query:   86 AESSDAKGTKRDFSTAILERKKAPNRLVVDEAINDDNSVVVLHPDTMEKLQFFRGDTILIKGKKRKDTVCIALADDTCEEPKIRMNKVVRSNLRVRLGDVVSVHQCADVKYGKRVHILPVDDTIEGVTGNLFDAYLKPYFTEAYRPVRKGDLFLVRGGMRSVEFKVIETDPPEYCVVAPDTEIFCEGEPV-RSGDENRLDEVGYDDVGG 709
            A  +D+KG   D STAIL++K  PNRL+VDEAIN+DNSVV L    M++LQ FRGDT+L+KGKKR++ VCI L+DDTC + KIRMN+VVR+NLRVRLGDV+S+  C DVKYGKR+H+LP+DDT+EG+TGNLF+ YLKPYF EAYRP+RKGD+FLVRGGMR+VEFKV+ETDP  YC+VAPDT I CEGEP+ R  +E  L+EVGYDD+GG
Sbjct:    2 ASGADSKGD--DLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKREDEEESLNEVGYDDIGG 208          
BLAST of FC868564 vs. ExPASy Swiss-Prot
Match: TERA_MOUSE (Transitional endoplasmic reticulum ATPase OS=Mus musculus GN=Vcp PE=1 SV=4)

HSP 1 Score: 311.612 bits (797), Expect = 2.636e-84
Identity = 144/209 (68.90%), Postives = 177/209 (84.69%), Query Frame = 2
Query:   86 AESSDAKGTKRDFSTAILERKKAPNRLVVDEAINDDNSVVVLHPDTMEKLQFFRGDTILIKGKKRKDTVCIALADDTCEEPKIRMNKVVRSNLRVRLGDVVSVHQCADVKYGKRVHILPVDDTIEGVTGNLFDAYLKPYFTEAYRPVRKGDLFLVRGGMRSVEFKVIETDPPEYCVVAPDTEIFCEGEPV-RSGDENRLDEVGYDDVGG 709
            A  +D+KG   D STAIL++K  PNRL+VDEAIN+DNSVV L    M++LQ FRGDT+L+KGKKR++ VCI L+DDTC + KIRMN+VVR+NLRVRLGDV+S+  C DVKYGKR+H+LP+DDT+EG+TGNLF+ YLKPYF EAYRP+RKGD+FLVRGGMR+VEFKV+ETDP  YC+VAPDT I CEGEP+ R  +E  L+EVGYDD+GG
Sbjct:    2 ASGADSKGD--DLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKREDEEESLNEVGYDDIGG 208          
BLAST of FC868564 vs. ExPASy Swiss-Prot
Match: TERA_HUMAN (Transitional endoplasmic reticulum ATPase OS=Homo sapiens GN=VCP PE=1 SV=4)

HSP 1 Score: 311.612 bits (797), Expect = 2.636e-84
Identity = 144/209 (68.90%), Postives = 177/209 (84.69%), Query Frame = 2
Query:   86 AESSDAKGTKRDFSTAILERKKAPNRLVVDEAINDDNSVVVLHPDTMEKLQFFRGDTILIKGKKRKDTVCIALADDTCEEPKIRMNKVVRSNLRVRLGDVVSVHQCADVKYGKRVHILPVDDTIEGVTGNLFDAYLKPYFTEAYRPVRKGDLFLVRGGMRSVEFKVIETDPPEYCVVAPDTEIFCEGEPV-RSGDENRLDEVGYDDVGG 709
            A  +D+KG   D STAIL++K  PNRL+VDEAIN+DNSVV L    M++LQ FRGDT+L+KGKKR++ VCI L+DDTC + KIRMN+VVR+NLRVRLGDV+S+  C DVKYGKR+H+LP+DDT+EG+TGNLF+ YLKPYF EAYRP+RKGD+FLVRGGMR+VEFKV+ETDP  YC+VAPDT I CEGEP+ R  +E  L+EVGYDD+GG
Sbjct:    2 ASGADSKGD--DLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKREDEEESLNEVGYDDIGG 208          
BLAST of FC868564 vs. ExPASy Swiss-Prot
Match: TERA_PIG (Transitional endoplasmic reticulum ATPase OS=Sus scrofa GN=VCP PE=1 SV=5)

HSP 1 Score: 309.686 bits (792), Expect = 1.002e-83
Identity = 143/209 (68.42%), Postives = 176/209 (84.21%), Query Frame = 2
Query:   86 AESSDAKGTKRDFSTAILERKKAPNRLVVDEAINDDNSVVVLHPDTMEKLQFFRGDTILIKGKKRKDTVCIALADDTCEEPKIRMNKVVRSNLRVRLGDVVSVHQCADVKYGKRVHILPVDDTIEGVTGNLFDAYLKPYFTEAYRPVRKGDLFLVRGGMRSVEFKVIETDPPEYCVVAPDTEIFCEGEPV-RSGDENRLDEVGYDDVGG 709
            A  +D+KG   D STAIL++K  PNRL+VDEAIN+DNSVV L    M++LQ FRGDT+L+KGKKR++ VCI L+DDTC + KIRMN+VVR+NLRV LGDV+S+  C DVKYGKR+H+LP+DDT+EG+TGNLF+ YLKPYF EAYRP+RKGD+FLVRGGMR+VEFKV+ETDP  YC+VAPDT I CEGEP+ R  +E  L+EVGYDD+GG
Sbjct:    2 ASGADSKGD--DLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVHLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKREDEEESLNEVGYDDIGG 208          
BLAST of FC868564 vs. ExPASy Swiss-Prot
Match: TERA_BOVIN (Transitional endoplasmic reticulum ATPase OS=Bos taurus GN=VCP PE=1 SV=1)

HSP 1 Score: 309.686 bits (792), Expect = 1.002e-83
Identity = 143/209 (68.42%), Postives = 176/209 (84.21%), Query Frame = 2
Query:   86 AESSDAKGTKRDFSTAILERKKAPNRLVVDEAINDDNSVVVLHPDTMEKLQFFRGDTILIKGKKRKDTVCIALADDTCEEPKIRMNKVVRSNLRVRLGDVVSVHQCADVKYGKRVHILPVDDTIEGVTGNLFDAYLKPYFTEAYRPVRKGDLFLVRGGMRSVEFKVIETDPPEYCVVAPDTEIFCEGEPV-RSGDENRLDEVGYDDVGG 709
            A  +D+KG   D STAIL++K  PNRL+VDEAIN+DNSVV L    M++LQ FRGDT+L+KGKKR++ VCI L+DDTC + KIRMN+VVR+NLRV LGDV+S+  C DVKYGKR+H+LP+DDT+EG+TGNLF+ YLKPYF EAYRP+RKGD+FLVRGGMR+VEFKV+ETDP  YC+VAPDT I CEGEP+ R  +E  L+EVGYDD+GG
Sbjct:    2 ASGADSKGD--DLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVHLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKREDEEESLNEVGYDDIGG 208          
The following BLAST results are available for this feature:
BLAST of FC868564 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
CD48D_ARATH8.996e-10989.15Cell division control protein 48 homolog D OS=Arab... [more]
CD48E_ARATH2.617e-10891.04Cell division control protein 48 homolog E OS=Arab... [more]
CD48A_ARATH6.447e-10790.09Cell division control protein 48 homolog A OS=Arab... [more]
CDC48_SOYBN8.420e-10787.74Cell division cycle protein 48 homolog OS=Glycine ... [more]
CDC48_CAPAN1.756e-10487.26Cell division cycle protein 48 homolog OS=Capsicum... [more]
TERA_RAT2.636e-8468.90Transitional endoplasmic reticulum ATPase OS=Rattu... [more]
TERA_MOUSE2.636e-8468.90Transitional endoplasmic reticulum ATPase OS=Mus m... [more]
TERA_HUMAN2.636e-8468.90Transitional endoplasmic reticulum ATPase OS=Homo ... [more]
TERA_PIG1.002e-8368.42Transitional endoplasmic reticulum ATPase OS=Sus s... [more]
TERA_BOVIN1.002e-8368.42Transitional endoplasmic reticulum ATPase OS=Bos t... [more]

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Properties
Property NameValue
Genbank descriptionC31001H12EF AbioticL1 Citrus clementina cDNA clone C31001H12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868564 ID=FC868564; Name=FC868564; organism=Citrus clementina; type=EST; length=710bp
ATCATACACAAAATTCTGTTCTCTCAATTCCTCTAATCACTTTCGTTATC
TCATTCTCTTCAATCAACTAATTATGTCTAATCAAGCTGAATCCTCTGAT
GCTAAGGGGACGAAGAGGGACTTTAGTACGGCCATTTTGGAGCGAAAGAA
GGCACCGAATCGTCTCGTTGTTGATGAAGCTATTAACGATGATAACTCTG
TCGTTGTTCTTCATCCCGATACCATGGAGAAGCTCCAATTCTTCCGCGGT
GACACGATCCTCATCAAGGGAAAGAAAAGGAAAGATACCGTTTGTATTGC
CCTTGCCGACGATACATGTGAGGAACCGAAGATAAGAATGAATAAGGTCG
TGAGGTCGAACTTGAGGGTTAGACTCGGAGATGTTGTTTCTGTGCACCAG
TGCGCTGATGTCAAATACGGAAAGCGTGTGCACATATTACCTGTGGATGA
CACAATTGAAGGGGTTACTGGAAATCTCTTTGATGCATACTTGAAACCTT
ATTTCACGGAAGCTTATCGACCAGTGAGGAAGGGTGATCTATTCCTTGTT
AGAGGTGGAATGAGAAGTGTAGAGTTCAAGGTTATTGAGACTGACCCTCC
TGAATACTGTGTGGTTGCCCCTGATACTGAGATCTTCTGTGAGGGAGAGC
CAGTGAGAAGCGGAGATGAGAATCGATTAGATGAGGTTGGCTATGATGAT
GTTGGTGGGG
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