FC868566

Overview
NameFC868566
Unique NameFC868566
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9356 contig Ccv1_Contig9356:1..705. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC868566 vs. ExPASy Swiss-Prot
Match: EXD1_MOUSE (Exonuclease 3'-5' domain-containing protein 1 OS=Mus musculus GN=Exd1 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.694e-14
Identity = 52/159 (32.70%), Postives = 81/159 (50.94%), Query Frame = 1 
Query:  232 ERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDA-IQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFV-----GLLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAA 690
            ++Q V+    EG ++CRHG LC +Q+A    +YL D  + G        +  LE   I KVIHDC+  S+ L  Q+GI L+NV DTQ+A  L    E     P+   +        L   PRY  + + E+ + R+  +++P+ W  RPL   +++  A
Sbjct:  153 KKQSVLSVAAEGANVCRHGKLCWLQVATNSRVYLFDIFLLGSRAFNNGLQMILEDKRILKVIHDCRWLSDCLSHQYGIMLNNVFDTQVADVLQFSMETGGFLPNCISTLQESLIRHLKVAPRY--LFFLEERQKRI--QENPEIWLTRPLPPSLLKILA 307
[Close]
BLAST of FC868566 vs. ExPASy Swiss-Prot
Match: EXD1_HUMAN (Exonuclease 3'-5' domain-containing protein 1 OS=Homo sapiens GN=EXD1 PE=2 SV=3)

HSP 1 Score: 78.5666 bits (192), Expect = 3.694e-14
Identity = 52/159 (32.70%), Postives = 83/159 (52.20%), Query Frame = 1 
Query:  232 ERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDA-IQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYIS-----FVGLLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAA 690
            ++Q V+    EG ++CRHG LC +Q+A    +YL D  + G        +  LE   I KVIHDC+  S+ L  Q+GI L+NV DTQ+A  L    E     P+   +        L   P+Y  +S+ EK +   L++++P+ W  RP++  +++  A
Sbjct:   96 KKQNVLSVAAEGANVCRHGKLCWLQVATNCRVYLFDIFLLGSRAFHNGLQMILEDKRILKVIHDCRWLSDCLSHQYGILLNNVFDTQVADVLQFSMETGGYLPNCITTLQESLIKHLQVAPKY--LSFLEKRQ--KLIQENPEVWFIRPVSPSLLKILA 250
The following BLAST results are available for this feature:
BLAST of FC868566 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
EXD1_MOUSE3.694e-1432.70Exonuclease 3'-5' domain-containing protein 1 OS=M... [more]
EXD1_HUMAN3.694e-1432.70Exonuclease 3'-5' domain-containing protein 1 OS=H... [more]
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Properties
Property NameValue
Genbank descriptionC31002A02EF AbioticL1 Citrus clementina cDNA clone C31002A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868566 ID=FC868566; Name=FC868566; organism=Citrus clementina; type=EST; length=704bp
GGAAGCCAGAATAAAAACCCTAATACGGACAATACAGAGGGGAAAAGAAA
AAAATTTTAAAAAAAATTGATCTGGTTGGATGGTCCCGATGACATGGCTT
CGTCTCCTTCTCATCAAACTCATATTCCCCTCTCTTCAGACCCTGATGGA
AAGCCCATAGATTCAGTGGTTCCAATCCATATTGTGACCAATGCTTCTCA
ACTTCCTGCTGAGTTCCTGGAACCATCTTCTGAGAGACAATTGGTCATTG
GTTTTGACTGTGAGGGAGTTGACCTTTGTCGCCATGGAAGTCTTTGTATT
ATGCAGCTAGCATTTCCAGATGCTATATATCTGGTTGACGCTATTCAGGG
TGGGGAGACGGTTGTGAAAGCCTGTAAGCCTGCACTTGAGTCTAGTTACA
TCACAAAAGTTATTCACGATTGCAAACGAGATAGTGAGGCATTATATTTT
CAATTTGGCATTAAGTTGCACAATGTTGTGGATACCCAGATTGCTTATTC
TTTAATAGAGGAGCAGGAAGGTCGGAAAAGATCACCGGATGACTACATAT
CATTTGTTGGTCTTCTCGCAGATCCACGCTATTGTGGTATATCTTATCAA
GAGAAGGAAGAGGTTCGTGTACTCCTTAGGCAGGACCCCCAGTTTTGGAC
ATACAGACCACTAACTGAACTGATGGTCCGAGCAGCTGCAGATGATGTCC
GCTT
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