FC868568

Overview
NameFC868568
Unique NameFC868568
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9357 contig Ccv1_Contig9357:1..697. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868568 vs. ExPASy Swiss-Prot
Match: VRN1_ARATH (B3 domain-containing transcription factor VRN1 OS=Arabidopsis thaliana GN=VRN1 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.357e-19
Identity = 45/103 (43.69%), Postives = 66/103 (64.08%), Query Frame = 2
Query:  185 PFRFFRVILPSILEQKKLKIPKAFVGRFGYEELSSDATLKTPNGCVWQVGVTKDKGKIWLDDGWHHFVKDHSICVAYFLVFKYAKNSTFDVLIFDMTACEIDY 493
            PF F ++I  S +++K+L++P  FV +F  +ELS    L  P+G VW+VG+ K   KIW  DGW  FV  +SI + Y L+F+Y  NS F V IF+++  EI+Y
Sbjct:    4 PF-FHKLIFSSTIQEKRLRVPDKFVSKFK-DELSVAVALTVPDGHVWRVGLRKADNKIWFQDGWQEFVDRYSIRIGYLLIFRYEGNSAFSVYIFNLSHSEINY 104          
BLAST of FC868568 vs. ExPASy Swiss-Prot
Match: Y3896_ARATH (B3 domain-containing protein At3g18960 OS=Arabidopsis thaliana GN=At3g18960 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.022e-16
Identity = 42/102 (41.18%), Postives = 66/102 (64.71%), Query Frame = 2
Query:  191 RFFRVILPSILEQKKLKIPKAFVGRFGYEELSSDATLKTPNGCVWQVGVTKDKGKIWLDDGWHHFVKDHSICVAYFLVFKYAKNSTFDVLIFDMTACEIDYP 496
            +FF+++LPS ++ K +KIP  FV   G  +LS   TL+TP G    + + +   +IW  +GW  F + HSI   +FL+F+Y +NS+F V+IF+++ACE  YP
Sbjct:   29 KFFKLVLPSTMKDKMMKIPPRFVKLQG-SKLSEVVTLETPAGFKRSIKLKRIGEEIWFHEGWSEFAEAHSIEEGHFLLFEYKENSSFRVIIFNVSACETKYP 129          
BLAST of FC868568 vs. ExPASy Swiss-Prot
Match: Y4158_ARATH (B3 domain-containing protein At4g01580 OS=Arabidopsis thaliana GN=At4g01580 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.742e-16
Identity = 42/102 (41.18%), Postives = 65/102 (63.73%), Query Frame = 2
Query:  191 RFFRVILPSILEQKKLKIPKAFVGRFGYEELSSDATLKTPNGCVWQVGVTKDKGKIWLDDGWHHFVKDHSICVAYFLVFKYAKNSTFDVLIFDMTACEIDYP 496
            +FF+++LPS ++ K ++IP  FV   G  +LS   TL TP G    + + +   +IW  +GW  F + HSI   +FL+F+Y KNS+F V+IF+ +ACE +YP
Sbjct:   29 KFFKLVLPSTMKDKMMRIPPRFVKLQG-SKLSEVVTLVTPAGYKRSIKLKRIGEEIWFHEGWSEFAEAHSIEEGHFLLFEYKKNSSFRVIIFNASACETNYP 129          
BLAST of FC868568 vs. ExPASy Swiss-Prot
Match: Y1475_ARATH (B3 domain-containing protein At1g49475 OS=Arabidopsis thaliana GN=At1g49475 PE=2 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 8.648e-16
Identity = 45/122 (36.89%), Postives = 73/122 (59.84%), Query Frame = 2
Query:  191 RFFRVILPSILEQKKLKIPKAFVGRFGYEELSSDATLKTPNGCVWQVGVTKDKGKIWLDDGWHHFVKDHSICVAYFLVFKYAKNSTFDVLIFDMTACEIDYPYHRGQPNKEEQNSIHDDEMQ 556
            +F ++IL S + +K +K+P  FV RFG  +L+ + TL+TP G    + + +   ++W + GW  F + HS+   +FL F Y  +S F V+IFD++A EI+YP      N+EE   + DD+ Q
Sbjct:   33 KFIKIILLSRIIEKMMKVPARFV-RFG-PKLTDNVTLQTPVGFKRSIRIKRIGDEVWFEKGWSEFAEAHSLSDGHFLFFHYEGDSCFRVVIFDVSASEIEYPLDDTDDNREE---VMDDDEQ 149          
BLAST of FC868568 vs. ExPASy Swiss-Prot
Match: Y3123_ORYSJ (B3 domain-containing protein Os03g0212300 OS=Oryza sativa subsp. japonica GN=Os03g0212300 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.760e-11
Identity = 44/118 (37.29%), Postives = 57/118 (48.31%), Query Frame = 2
Query:  158 KMAGNRATEPFRFFRVILPSILEQKKLKIPKAFVGRFGYEELSSDATLKTPNGC-VWQVGVTKD--KGKIWLDDGWHHFVKDHSICVAYFLVFKYAKNSTFDVLIFDMTACEIDYPYH 502
            +MA  R T+ F FFR+ILP    + KLK+P  F    G  EL          G   W V V  D   G ++L  GW  F + H +   +FLVF+Y   + F V +FD T C  DY  H
Sbjct:    4 QMANLRLTD-FEFFRIILPGS-SKTKLKLPYKFARELGDRELREARLRVAGEGRRPWDVKVFDDDVSGDVYLGRGWQEFARAHDLRDGHFLVFRYDGAAAFTVTVFDETMCRRDYRRH 119          
The following BLAST results are available for this feature:
BLAST of FC868568 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
VRN1_ARATH8.357e-1943.69B3 domain-containing transcription factor VRN1 OS=... [more]
Y3896_ARATH1.022e-1641.18B3 domain-containing protein At3g18960 OS=Arabidop... [more]
Y4158_ARATH1.742e-1641.18B3 domain-containing protein At4g01580 OS=Arabidop... [more]
Y1475_ARATH8.648e-1636.89B3 domain-containing protein At1g49475 OS=Arabidop... [more]
Y3123_ORYSJ3.760e-1137.29B3 domain-containing protein Os03g0212300 OS=Oryza... [more]
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Properties
Property NameValue
Genbank descriptionC31002A05EF AbioticL1 Citrus clementina cDNA clone C31002A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868568 ID=FC868568; Name=FC868568; organism=Citrus clementina; type=EST; length=697bp
AGGGTGAAAAGTGATTCAGACAGAGGGTCACGTCACATGTCATGGCAGCA
TGAACAGAGTTTCTGAATGTTAGACTTGAACAGTTGAATATATCACGGCA
AAAAGCAAAATGAGCAAAAGACATGTGGGATTTTCTCGCCGTTGTATGGT
GATGAAGAAAATGGCTGGCAACAGAGCAACGGAACCCTTTCGTTTCTTCA
GAGTCATTCTTCCGAGCATCCTTGAACAGAAGAAGCTGAAAATCCCGAAA
GCGTTTGTCGGGAGATTTGGGTATGAAGAACTTTCCTCTGATGCTACTCT
CAAGACTCCGAACGGATGTGTTTGGCAAGTGGGGGTGACAAAAGACAAGG
GAAAGATTTGGCTCGATGATGGATGGCATCATTTTGTCAAAGATCATTCT
ATTTGTGTTGCATATTTTTTGGTATTCAAATATGCCAAGAATTCAACCTT
TGATGTTCTTATTTTTGATATGACTGCTTGCGAGATTGACTATCCTTATC
ATCGCGGACAACCAAACAAGGAGGAGCAGAATTCAATCCATGACGACGAA
ATGCAATGTGAAAACTCAACTAAGAAACTAGGTTTCAGAGCTTCATGCAA
AAATCAAAATGCACCATTCACAAGGATCTTTGCACTAAAAAGGCTGTTGA
ATGGAACTGCTGGGAATTTTAGTCGTCCAGCTCAGCAGTTCAGATGA
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