FC868573

Overview
NameFC868573
Unique NameFC868573
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length598
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC868573_ssr256 microsatellite FC868573_ssr256:256..267. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of FC868573 vs. ExPASy Swiss-Prot
Match: ARI8_ARATH (Probable E3 ubiquitin-protein ligase ARI8 OS=Arabidopsis thaliana GN=ARI8 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 3.894e-29
Identity = 62/103 (60.19%), Postives = 78/103 (75.73%), Query Frame = 1
Query:  289 DPDHDDFDNASFRRQQHSYTVLREADIKCQQEDDITKVSTVLSISRVDASILLRHYNWSVSKVHDAWFADEDAVRKSVGFLDKPVVELSNARELTCGIWFDTY 597
            D   DD D+  FRR+Q +Y+VL EADI   QEDDI+++STVLSISR  ++ILLRHYNW VS+VHD WFADE+ VR +VG L+KPVV+     EL CGI F+T+
Sbjct:   33 DDAADDSDDLIFRRRQQNYSVLSEADICKLQEDDISRISTVLSISRNSSAILLRHYNWCVSRVHDEWFADEEKVRDAVGLLEKPVVDFPTDGELDCGICFETF 135          
BLAST of FC868573 vs. ExPASy Swiss-Prot
Match: ARI7_ARATH (Probable E3 ubiquitin-protein ligase ARI7 OS=Arabidopsis thaliana GN=ARI7 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.060e-26
Identity = 69/150 (46.00%), Postives = 87/150 (58.00%), Query Frame = 1
Query:  148 MDSEEDDFYSGEAMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFIEEDPDHDDFDNASFRRQQHSYTVLREADIKCQQEDDITKVSTVLSISRVDASILLRHYNWSVSKVHDAWFADEDAVRKSVGFLDKPVVELSNARELTCGIWFDTY 597
            M+S EDDFYSG                                F+EED D  D    +  R Q ++ VLRE DI+  Q D+I +VS VLSI+ V+ASILLRH++WSV +VHD WFADE+ VRK+VG L+  VV  S+  ELTCGI FD+Y
Sbjct:   13 MESGEDDFYSGGT----------------DDCNDSDDGEPDYGFVEEDAD--DSAMIASHRSQKNFCVLREEDIRRHQMDNIERVSVVLSITEVEASILLRHFHWSVGRVHDEWFADEERVRKTVGILESHVVPPSDDSELTCGICFDSY 144          
BLAST of FC868573 vs. ExPASy Swiss-Prot
Match: ARI5_ARATH (Probable E3 ubiquitin-protein ligase ARI5 OS=Arabidopsis thaliana GN=ARI5 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 9.926e-25
Identity = 55/103 (53.40%), Postives = 73/103 (70.87%), Query Frame = 1
Query:  289 DPDHDDFDNASFRRQQHSYTVLREADIKCQQEDDITKVSTVLSISRVDASILLRHYNWSVSKVHDAWFADEDAVRKSVGFLDKPVVELSNARELTCGIWFDTY 597
            + D DD    +  R + +Y VL+E DI+  Q DD+ +VS VLSI+ V+AS LL HY+WSVSKV+D WFADE+ VR++VG L+ PVV   + RE TCGI FD+Y
Sbjct:   37 EADTDDAAIIASYRSKSNYVVLKEEDIRRHQNDDVGRVSAVLSITDVEASTLLLHYHWSVSKVNDEWFADEERVRRTVGILEGPVVTTPDGREFTCGICFDSY 139          
BLAST of FC868573 vs. ExPASy Swiss-Prot
Match: ARI6_ARATH (Putative E3 ubiquitin-protein ligase ARI6 OS=Arabidopsis thaliana GN=ARI6 PE=5 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 8.402e-24
Identity = 54/107 (50.47%), Postives = 75/107 (70.09%), Query Frame = 1
Query:  277 FIEEDPDHDDFDNASFRRQQHSYTVLREADIKCQQEDDITKVSTVLSISRVDASILLRHYNWSVSKVHDAWFADEDAVRKSVGFLDKPVVELSNARELTCGIWFDTY 597
            ++  + D DD    ++ R Q +Y VL+E DI+  Q+DD+ +VS VLSI+ V AS+LL HY+WSVSKV+D WFADED VR++VG L+ P     + RE TCGI F++Y
Sbjct:   37 YVFGEADTDDAAIIAYHRSQINYVVLKEEDIRRHQKDDVGRVSVVLSITDVQASLLLLHYHWSVSKVNDEWFADEDRVRRTVGILEGPA---PDGREFTCGICFESY 140          
BLAST of FC868573 vs. ExPASy Swiss-Prot
Match: ARI11_ARATH (Probable E3 ubiquitin-protein ligase ARI11 OS=Arabidopsis thaliana GN=ARI11 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.483e-20
Identity = 47/102 (46.08%), Postives = 73/102 (71.57%), Query Frame = 1
Query:  301 DDFD--NASFRRQQHSYTVLREADIKCQQEDDITKVSTVLSISRVDASILLRHYNWSVSKVHDAWFADEDAVRKSVGFLDKPVVELSNAR-ELTCGIWFDTY 597
            DD++  + +  R + SY V++E DI   Q DDI +VSTVLS+S+V++ +LL HY+W VSK+ D WF DE+ +RK+VG L +PVV+++    ++ CGI F++Y
Sbjct:   45 DDYNPVDDTISRSEKSYVVVKEEDILKLQRDDIEQVSTVLSVSQVESIVLLLHYHWCVSKLEDEWFTDEERIRKTVGILKEPVVDVNGTEVDIQCGICFESY 146          
BLAST of FC868573 vs. ExPASy Swiss-Prot
Match: ARI9_ARATH (Probable E3 ubiquitin-protein ligase ARI9 OS=Arabidopsis thaliana GN=ARI9 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.797e-19
Identity = 46/111 (41.44%), Postives = 71/111 (63.96%), Query Frame = 1
Query:  295 DHDDFDNA--SFRRQQHSYTVLREADIKCQQEDDITKVSTVLSISRVDASILLRHYNWSVSKVHDAWFADEDAVRKSVGFLDKPVVELSNARE--------LTCGIWFDTY 597
            + DD+++   +    + SY +L+E DI   Q DDI +VS++LS+S+V+  +LL HYNW VSKV D WF DE+ +RK+VG L +PVV+ +   +        + CGI F++Y
Sbjct:   25 ESDDYNDVVDTIIPSEKSYVILKEEDILKLQRDDIERVSSILSLSQVEVIVLLLHYNWCVSKVEDEWFTDEERIRKAVGLLKEPVVDFNGGEKDKKCRKVNIQCGICFESY 135          
BLAST of FC868573 vs. ExPASy Swiss-Prot
Match: ARI10_ARATH (Probable E3 ubiquitin-protein ligase ARI10 OS=Arabidopsis thaliana GN=ARI10 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 8.138e-19
Identity = 41/89 (46.07%), Postives = 65/89 (73.03%), Query Frame = 1
Query:  334 QHSYTVLREADIKCQQEDDITKVSTVLSISRVDASILLRHYNWSVSKVHDAWFADEDAVRKSVGFLDKPVVELSNAR-ELTCGIWFDTY 597
            + SY +++E +I   Q DDI +VST+L +S+V+A +LL HY+W VSK+ D WF DE+ +RK+VG L +PVV+++    ++ CGI F++Y
Sbjct:   40 EKSYVIIKEEEILKLQRDDIERVSTILFLSQVEAIVLLLHYHWCVSKLEDEWFTDEERIRKTVGILKEPVVDVNGTEVDIQCGICFESY 128          
The following BLAST results are available for this feature:
BLAST of FC868573 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
ARI8_ARATH3.894e-2960.19Probable E3 ubiquitin-protein ligase ARI8 OS=Arabi... [more]
ARI7_ARATH1.060e-2646.00Probable E3 ubiquitin-protein ligase ARI7 OS=Arabi... [more]
ARI5_ARATH9.926e-2553.40Probable E3 ubiquitin-protein ligase ARI5 OS=Arabi... [more]
ARI6_ARATH8.402e-2450.47Putative E3 ubiquitin-protein ligase ARI6 OS=Arabi... [more]
ARI11_ARATH1.483e-2046.08Probable E3 ubiquitin-protein ligase ARI11 OS=Arab... [more]
ARI9_ARATH2.797e-1941.44Probable E3 ubiquitin-protein ligase ARI9 OS=Arabi... [more]
ARI10_ARATH8.138e-1946.07Probable E3 ubiquitin-protein ligase ARI10 OS=Arab... [more]
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Properties
Property NameValue
Genbank descriptionC31002A10EF AbioticL1 Citrus clementina cDNA clone C31002A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868573 ID=FC868573; Name=FC868573; organism=Citrus clementina; type=EST; length=598bp
AAACATTCTCTTAATTCCAAGTAAAGCGAGAGCCGAGAGGAGCCTCATTG
GGCTACAAATTCTTTTTCCTTTTGTTTTGTTTTTTTTTTTCTTTTTAATT
TTCTCTCCATCCAAACAAGACCTTCGCTAGGGTTTTCGAGTTGGCGCATG
GATTCTGAGGAGGATGATTTCTACAGCGGCGAGGCAATGGACGATGACAA
CGATTACTACAACTCCGACGATGCCGCCGCCGATTACGGCGTCGAAGATG
ACGAAGACGACGACGACGGTTACGGGTTCATCGAGGAGGATCCTGATCAT
GATGATTTCGATAATGCCTCCTTCCGTCGCCAGCAGCATAGTTACACCGT
ATTGAGGGAAGCAGATATAAAATGTCAGCAGGAGGATGATATTACAAAAG
TTTCTACTGTCCTTTCAATATCAAGAGTAGATGCAAGTATCCTACTCCGT
CATTATAACTGGAGTGTTAGTAAAGTGCATGATGCATGGTTCGCTGATGA
AGATGCAGTTCGGAAATCAGTTGGCTTTTTGGACAAACCAGTTGTTGAGC
TCTCCAATGCTAGAGAACTAACTTGTGGGATTTGGTTTGATACCTATT
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