FC868585

Overview
NameFC868585
Unique NameFC868585
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC868585_ssr23 microsatellite FC868585_ssr23:23..32. BLAST: Citrus ESTs to Prunus persica proteins V1
FC868585_ssr51 microsatellite FC868585_ssr51:51..64. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9362 contig Ccv1_Contig9362:1..706. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868585 vs. ExPASy Swiss-Prot
Match: CAX1_ARATH (Vacuolar cation/proton exchanger 1 OS=Arabidopsis thaliana GN=CAX1 PE=1 SV=3)

HSP 1 Score: 219.55 bits (558), Expect = 1.341e-56
Identity = 119/193 (61.66%), Postives = 141/193 (73.06%), Query Frame = 3
Query:  138 TEPW-LMENGSVKVLSK----EIRHGRTAHNMSSSSLRKKSDLTLVSKIRFPCLRRCLANIQEVILGTKLSVLFPAIPLAIIGQCFGFAEPWVFALSLLGLTPLAERVSFLTEQIAFYTGPTVGGLLNATCGNATELIIAIFALYERKIDVVKYXXXXXXXXXXXXXXXXXXFCGGIANLRR-NKIR*KQADV 698
            TEPW + ENG+  + +K    E+R GRTAHNMSSSSLRKKSDL ++ K+ +  L+  L+N+QEVILGTKL++LFPAIP AII    G ++PW+F LSLLGLTPLAERVSFLTEQ+AFYTGPT+GGLLNATCGNATELIIAI AL   K+ VVKY                  FCGGIAN+RR  +   KQADV
Sbjct:    6 TEPWSVAENGNPSITAKGSSRELRLGRTAHNMSSSSLRKKSDLRVIQKVPYKGLKDFLSNLQEVILGTKLAILFPAIPAAIICTYCGVSQPWIFGLSLLGLTPLAERVSFLTEQLAFYTGPTLGGLLNATCGNATELIIAILALTNNKVAVVKYSLLGSILSNLLLVLGTSLFCGGIANIRREQRFDRKQADV 198          
BLAST of FC868585 vs. ExPASy Swiss-Prot
Match: CAX3_ARATH (Vacuolar cation/proton exchanger 3 OS=Arabidopsis thaliana GN=CAX3 PE=1 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 5.634e-55
Identity = 118/193 (61.14%), Postives = 137/193 (70.98%), Query Frame = 3
Query:  141 EPW--LMENGSVKVLSK----EIRHGRTAHNMSSSSLRKKSDLTLVSKIRFPCLRRCLANIQEVILGTKLSVLFPAIPLAIIGQCFGFAEPWVFALSLLGLTPLAERVSFLTEQIAFYTGPTVGGLLNATCGNATELIIAIFALYERKIDVVKYXXXXXXXXXXXXXXXXXXFCGGIANLRR-NKIR*KQADV 698
            EPW  + ENG+  V +K    E+RHGRTAHNMSSSSLRKKSDL LV K+    L+  L+N+QEVILGTKL++LF AIPLAI+   + +  P +F LSL+GLTPLAERVSFLTEQ+AFYTGPTVGGLLNATCGNATELIIAI AL   K+ VVKY                  F GGIAN+RR  +   KQADV
Sbjct:    6 EPWAAIAENGNANVTAKGSSRELRHGRTAHNMSSSSLRKKSDLRLVQKVPCKTLKNILSNLQEVILGTKLTLLFLAIPLAILANSYNYGRPLIFGLSLIGLTPLAERVSFLTEQLAFYTGPTVGGLLNATCGNATELIIAILALANNKVAVVKYSLLGSILSNLLLVLGTSLFFGGIANIRREQRFDRKQADV 198          
BLAST of FC868585 vs. ExPASy Swiss-Prot
Match: CAX1A_ORYSJ (Vacuolar cation/proton exchanger 1a OS=Oryza sativa subsp. japonica GN=CAX1a PE=1 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 2.449e-50
Identity = 111/172 (64.53%), Postives = 122/172 (70.93%), Query Frame = 3
Query:  195 HGR--TAHNMSSSSLRKKSDLTLVSKIRFPCLRRCLANIQEVILGTKLSVLFPAIPLAIIGQCFGFAEPWVFALSLLGLTPLAERVSFLTEQIAFYTGPTVGGLLNATCGNATELIIAIFALYERKIDVVKYXXXXXXXXXXXXXXXXXXFCGGIANL-RRNKIR*KQADVT 701
            HGR  TAHNMSSSSLRKKSD  LV K+    LR  LAN+QEV L TKL+VLFPA+PLAI  QCF F + WVFALSLLGL PLAERVSFLTEQIA YTGPTVGGLLNATCGNATELIIA+FAL + KI+VVK                   FCGG+ NL  R      Q+DV+
Sbjct:   19 HGRSRTAHNMSSSSLRKKSDAALVRKVPVAPLRPLLANLQEVFLATKLAVLFPAVPLAIAAQCFRFDQVWVFALSLLGLIPLAERVSFLTEQIALYTGPTVGGLLNATCGNATELIIALFALLKGKIEVVKCSLLGSVLSNLLLVLGTSLFCGGVVNLGARQPYDRNQSDVS 190          
BLAST of FC868585 vs. ExPASy Swiss-Prot
Match: CAX4_ARATH (Vacuolar cation/proton exchanger 4 OS=Arabidopsis thaliana GN=CAX4 PE=1 SV=2)

HSP 1 Score: 177.948 bits (450), Expect = 4.474e-44
Identity = 97/179 (54.19%), Postives = 127/179 (70.95%), Query Frame = 3
Query:  150 LMENG---SVKVLSKEIRHGRTAHNMSSSSL-RKKSDLTLVSKIRFPCLRRCLANIQEVILGTKLSVLFPAIPLAIIGQCFGFAEPWVFALSLLGLTPLAERVSFLTEQIAFYTGPTVGGLLNATCGNATELIIAIFALYERKIDVVKYXXXXXXXXXXXXXXXXXXFCGGIANLRRNK 674
            L+ENG   S K  ++  R  R    +S+SSL RK+SDL L+S++R+  +RR L N+QEV+LGTKL +LFPA+PLA++   +     WVFALSLLGLTPLAER+SFLTEQIAF+TGPTVGGL+NATCGNATE+IIAI A+ +RK+ +VK                   F GGI+NLR+++
Sbjct:   14 LLENGGGGSDKPTAETSR--RVRRTVSASSLIRKRSDLKLISRVRWEFMRRILTNLQEVLLGTKLFILFPAVPLAVVAHRYDCPRAWVFALSLLGLTPLAERISFLTEQIAFHTGPTVGGLMNATCGNATEMIIAILAVGQRKMRIVKLSLLGSILSNLLFVLGTSLFLGGISNLRKHQ 190          
BLAST of FC868585 vs. ExPASy Swiss-Prot
Match: CAX1B_ORYSJ (Vacuolar cation/proton exchanger 1b OS=Oryza sativa subsp. japonica GN=CAX1b PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.759e-40
Identity = 90/158 (56.96%), Postives = 108/158 (68.35%), Query Frame = 3
Query:  201 RTAHNMSSSSLRKKSDLTLVSKIRFPCLRRCLANIQEVILGTKLSVLFPAIPLAIIGQCFGFAEPWVFALSLLGLTPLAERVSFLTEQIAFYTGPTVGGLLNATCGNATELIIAIFALYERKIDVVKYXXXXXXXXXXXXXXXXXXFCGGIANLRRNK 674
            RTAHN+SSSSLRK SD +L+ K+    LR  LAN+ +V+L T+L +LFPA+ LAI      F + WVF LSL+GL PLAER+SFLTEQIAFYTGPTVGGLLNAT GN TE+IIA+ AL E KI+VVK                   F  GIANLR ++
Sbjct:   31 RTAHNLSSSSLRKSSDASLLHKVPCAALRSLLANLNDVLLTTRLFLLFPAVLLAIAATYLHFGQVWVFVLSLIGLVPLAERLSFLTEQIAFYTGPTVGGLLNATFGNVTEVIIALLALREGKIEVVKCSLLGSILSNLLLVLGTSLFLAGIANLRAHQ 188          
BLAST of FC868585 vs. ExPASy Swiss-Prot
Match: CAX1C_ORYSJ (Vacuolar cation/proton exchanger 1c OS=Oryza sativa subsp. japonica GN=CAX1c PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.183e-28
Identity = 69/147 (46.94%), Postives = 92/147 (62.59%), Query Frame = 3
Query:  276 PCLRRCL----ANIQEVILGTKLSVLFPAIPLAIIGQCFGFAEPWVFALSLLGLTPLAERVSFLTEQIAFYTGPTVGGLLNATCGNATELIIAIFALYERKIDVVKYXXXXXXXXXXXXXXXXXXFCGGIANLRRNK-IR*KQADVT 701
            P LRR L    A +QEV+LGTKL  LF A+PLA+  +       WVFA SL+GL PLAERVSFL+E IA   GPT GG++NATCGN  ELIIA+FAL++ K++++K+                    GGI N+ + + +  +QADV+
Sbjct:   59 PLLRRLLGGPAAQLQEVLLGTKLYPLFSAVPLAVAAESLRLGRVWVFAFSLIGLAPLAERVSFLSEHIANTVGPTAGGIMNATCGNVPELIIALFALHKNKMEILKWSLLGSILSNLLLVLGSSLLFGGIVNIGKERPLDKRQADVS 205          
BLAST of FC868585 vs. ExPASy Swiss-Prot
Match: CAX2_ARATH (Vacuolar cation/proton exchanger 2 OS=Arabidopsis thaliana GN=CAX2 PE=1 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 1.267e-22
Identity = 59/128 (46.09%), Postives = 80/128 (62.50%), Query Frame = 3
Query:  294 LANIQEVILGTKLSVLFPAIPLAIIGQCFGFAEPWVFALSLLGLTPLAERVSFLTEQIAFYTGPTVGGLLNATCGNATELIIAIFALYERKIDVVKYXXXXXXXXXXXXXXXXXXFCGGIANLRRNKI 677
            L +I+ VI   KL++L P  PLAI+      ++ WVF L+L+G+TPLAER+ + TEQ+A YTGPTVGGLLNAT GN TELII+IFAL    I VV+                   FCGG+   +++++
Sbjct:   65 LNSIKIVIFCNKLNLLLPFGPLAILVHYMIDSKGWVFLLTLVGITPLAERLGYATEQLACYTGPTVGGLLNATFGNVTELIISIFALKNGMIRVVQLTLLGSILSNMLLVLGCAFFCGGLVFYQKDQV 192          
BLAST of FC868585 vs. ExPASy Swiss-Prot
Match: CAX2_ORYSJ (Vacuolar cation/proton exchanger 2 OS=Oryza sativa subsp. japonica GN=CAX2 PE=2 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 2.161e-22
Identity = 57/132 (43.18%), Postives = 81/132 (61.36%), Query Frame = 3
Query:  285 RRCLANIQEVILGTKLSVLFPAIPLAIIGQCFGFA-EPWVFALSLLGLTPLAERVSFLTEQIAFYTGPTVGGLLNATCGNATELIIAIFALYERKIDVVKYXXXXXXXXXXXXXXXXXXFCGGIANLRRNKI 677
            RR L +++ VIL  K++VL P  PLA++        + WVF  SL+G+TPLAER+ + TEQ+A YTGPT+GGLLNAT GNATE+II+++AL    I VV+                   F GG+ +  R+++
Sbjct:   58 RRALTSVRVVILQAKINVLLPFGPLAVMLHYLSANHQGWVFLFSLIGITPLAERLGYATEQLALYTGPTIGGLLNATFGNATEMIISLYALKNGMIRVVQQSLLGSILSNMLLVLGCAFFAGGLVHPSRDQV 189          
BLAST of FC868585 vs. ExPASy Swiss-Prot
Match: CAX5_ARATH (Vacuolar cation/proton exchanger 5 OS=Arabidopsis thaliana GN=CAX5 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.287e-22
Identity = 58/128 (45.31%), Postives = 77/128 (60.16%), Query Frame = 3
Query:  294 LANIQEVILGTKLSVLFPAIPLAIIGQCFGFAEPWVFALSLLGLTPLAERVSFLTEQIAFYTGPTVGGLLNATCGNATELIIAIFALYERKIDVVKYXXXXXXXXXXXXXXXXXXFCGGIANLRRNKI 677
            L + + VIL  KL++L P  PLAI+       + W+F LSL+G+TPLAER+ + TEQ+A YTG TVGGLLNAT GN TELII+IFAL    I VV+                   FCGG+   ++ ++
Sbjct:   65 LQSFKIVILSNKLNLLLPFGPLAILLHYLTDNKGWIFLLSLVGITPLAERLGYATEQLACYTGSTVGGLLNATFGNVTELIISIFALKSGMIRVVQLTLLGSILSNMLLVLGCAFFCGGLVFSQKEQV 192          
BLAST of FC868585 vs. ExPASy Swiss-Prot
Match: CAX3_ORYSJ (Vacuolar cation/proton exchanger 3 OS=Oryza sativa subsp. japonica GN=CAX3 PE=2 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 2.641e-20
Identity = 57/128 (44.53%), Postives = 76/128 (59.38%), Query Frame = 3
Query:  294 LANIQEVILGTKLSVLFPAIPLAIIGQCFGFAEPWVFALSLLGLTPLAERVSFLTEQIAFYTGPTVGGLLNATCGNATELIIAIFALYERKIDVVKYXXXXXXXXXXXXXXXXXXFCGGIANLRRNKI 677
            L +I+ VI  +KL++L P  P +II          VF  S+LG+TPLAER+ + TEQ+A YTGPTVGGLLNAT GNATE+IIAI+AL    I VV+                   F GGI +  ++++
Sbjct:   41 LRSIRIVIFTSKLNLLLPFGPASIILHYTTSRHGLVFLFSMLGITPLAERLGYATEQLAIYTGPTVGGLLNATFGNATEMIIAIYALKNGMIRVVQQSLLGSILSNMLLVMGCAFFAGGIVHRNKDQV 168          
The following BLAST results are available for this feature:
BLAST of FC868585 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
CAX1_ARATH1.341e-5661.66Vacuolar cation/proton exchanger 1 OS=Arabidopsis ... [more]
CAX3_ARATH5.634e-5561.14Vacuolar cation/proton exchanger 3 OS=Arabidopsis ... [more]
CAX1A_ORYSJ2.449e-5064.53Vacuolar cation/proton exchanger 1a OS=Oryza sativ... [more]
CAX4_ARATH4.474e-4454.19Vacuolar cation/proton exchanger 4 OS=Arabidopsis ... [more]
CAX1B_ORYSJ1.759e-4056.96Vacuolar cation/proton exchanger 1b OS=Oryza sativ... [more]
CAX1C_ORYSJ1.183e-2846.94Vacuolar cation/proton exchanger 1c OS=Oryza sativ... [more]
CAX2_ARATH1.267e-2246.09Vacuolar cation/proton exchanger 2 OS=Arabidopsis ... [more]
CAX2_ORYSJ2.161e-2243.18Vacuolar cation/proton exchanger 2 OS=Oryza sativa... [more]
CAX5_ARATH6.287e-2245.31Vacuolar cation/proton exchanger 5 OS=Arabidopsis ... [more]
CAX3_ORYSJ2.641e-2044.53Vacuolar cation/proton exchanger 3 OS=Oryza sativa... [more]

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Properties
Property NameValue
Genbank descriptionC31002C04EF AbioticL1 Citrus clementina cDNA clone C31002C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868585 ID=FC868585; Name=FC868585; organism=Citrus clementina; type=EST; length=704bp
GACTCACAGACTGAAACAAAATTCTCTCTCTCAATCAATCTTTAATCAAA
ATATATATATATATTTTTTATTATTAATTGTTTCTATCCTTCGTGTTTTT
TTTTTCTTTCAATTGCATTTGTGAAAAAATGGCTTCGACTGAACCATGGC
TGATGGAGAATGGCAGCGTGAAGGTTTTGAGCAAGGAGATCAGACATGGA
AGAACTGCACACAACATGTCATCCTCCTCGTTGAGGAAAAAATCCGATCT
TACCCTTGTCTCGAAAATTCGATTCCCTTGTCTTAGACGGTGTCTGGCTA
ATATCCAGGAGGTCATTTTGGGGACTAAACTTTCAGTTCTCTTTCCCGCC
ATTCCTTTAGCCATAATCGGCCAGTGTTTTGGATTTGCAGAACCATGGGT
ATTCGCTCTGAGCTTACTAGGACTGACTCCTCTGGCTGAACGTGTCAGCT
TCTTGACAGAGCAAATTGCTTTCTACACTGGCCCAACAGTGGGGGGATTA
TTGAACGCGACATGCGGCAATGCCACGGAGCTCATCATAGCAATTTTTGC
CCTATACGAACGTAAAATTGACGTGGTCAAATATTCTCTTTTGGGTTCCA
TTCTCTCAAACCTTCTTCTGGTTCTTGGCACTTCGCTCTTCTGTGGAGGG
ATTGCCAATCTCAGAAGGAACAAAATACGATAGAAACAAGCCGATGTCAC
TCGC
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