FC868595

Overview
NameFC868595
Unique NameFC868595
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length679
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC868595_ssr604 microsatellite FC868595_ssr604:604..613. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9364 contig Ccv1_Contig9364:1..679. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868595 vs. ExPASy Swiss-Prot
Match: PMA1_ORYSJ (Plasma membrane ATPase OS=Oryza sativa subsp. japonica GN=Os04g0656100 PE=2 SV=1)

HSP 1 Score: 360.147 bits (923), Expect = 5.937e-99
Identity = 174/223 (78.03%), Postives = 191/223 (85.65%), Query Frame = 2
Query:    5 DFSPFMSLIIAILNDGTIMTISKDRVKPSTQPDSWKLKEIFATGVVLGSYLAIMTVVFFWLMRKTDFFSDAFGVRSLRTRPDEMMAALYLQVSIISQALIFVTRSRSWSFIERPGLLLATAFVIAQLVATFIAVYANWSFARIEGCGWGWAGVIWLYSLVTYFPLDILKFGIRYILSGKAWDTLLENKTAFTTKKDYGKXXXXXXXXXXXXTLHGLQPPETTA 673
            DFSPFM LIIAILNDGTIMTISKDRVKPS  PDSWKLKEIFATG+VLGSYLA+MTV+FFW M KTDFF+D FGVRS+R    EMM+ALYLQVSI+SQALIFVTRSRSWSFIERPGLLL TAF++AQLVATF+AVYANW FARI+G GWGWAGVIWLYS+V YFPLDI KF IR++LSG+AWD LLENK AFTTKKDYG+            TLHGLQPPE  +
Sbjct:  670 DFSPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLKEIFATGIVLGSYLALMTVIFFWAMHKTDFFTDKFGVRSIRNSEHEMMSALYLQVSIVSQALIFVTRSRSWSFIERPGLLLVTAFMLAQLVATFLAVYANWGFARIKGIGWGWAGVIWLYSIVFYFPLDIFKFFIRFVLSGRAWDNLLENKIAFTTKKDYGREEREAQWATAQRTLHGLQPPEVAS 892          
BLAST of FC868595 vs. ExPASy Swiss-Prot
Match: PMA4_NICPL (Plasma membrane ATPase 4 OS=Nicotiana plumbaginifolia GN=PMA4 PE=2 SV=1)

HSP 1 Score: 358.221 bits (918), Expect = 2.256e-98
Identity = 174/222 (78.38%), Postives = 189/222 (85.14%), Query Frame = 2
Query:    5 DFSPFMSLIIAILNDGTIMTISKDRVKPSTQPDSWKLKEIFATGVVLGSYLAIMTVVFFWLMRKTDFFSDAFGVRSLRTRPDEMMAALYLQVSIISQALIFVTRSRSWSFIERPGLLLATAFVIAQLVATFIAVYANWSFARIEGCGWGWAGVIWLYSLVTYFPLDILKFGIRYILSGKAWDTLLENKTAFTTKKDYGKXXXXXXXXXXXXTLHGLQPPETT 670
            DFS FM LIIAILNDGTIMTISKDRVKPS  PDSWKLKEIFATGVVLG Y A+MTVVFFW M  TDFFSD FGV+SLR   +EMM+ALYLQVSIISQALIFVTRSRSWSF+ERPG+LL  AF+IAQLVAT IAVYANW+FAR++GCGWGWAGVIWLYS++ Y PLDI+KF IRYILSGKAW+ LL+NKTAFTTKKDYGK            TLHGLQPPE T
Sbjct:  673 DFSAFMVLIIAILNDGTIMTISKDRVKPSPMPDSWKLKEIFATGVVLGGYQALMTVVFFWAMHDTDFFSDKFGVKSLRNSDEEMMSALYLQVSIISQALIFVTRSRSWSFLERPGMLLVIAFMIAQLVATLIAVYANWAFARVKGCGWGWAGVIWLYSIIFYLPLDIMKFAIRYILSGKAWNNLLDNKTAFTTKKDYGKEEREAQWALAQRTLHGLQPPEAT 894          
BLAST of FC868595 vs. ExPASy Swiss-Prot
Match: PMA5_ARATH (ATPase 5, plasma membrane-type OS=Arabidopsis thaliana GN=AHA5 PE=2 SV=3)

HSP 1 Score: 353.214 bits (905), Expect = 7.257e-97
Identity = 174/220 (79.09%), Postives = 189/220 (85.91%), Query Frame = 2
Query:    5 DFSPFMSLIIAILNDGTIMTISKDRVKPSTQPDSWKLKEIFATGVVLGSYLAIMTVVFFWLMRKTDFFSDAFGVRSLRTRPDEMMAALYLQVSIISQALIFVTRSRSWSFIERPGLLLATAFVIAQLVATFIAVYANWSFARIEGCGWGWAGVIWLYSLVTYFPLDILKFGIRYILSGKAWDTLLENKTAFTTKKDYGKXXXXXXXXXXXXTLHGLQPPE 664
            DFSPFM LIIAILNDGTIMTISKDR+KPS QPDSWKL++IF+TGVVLG Y A+MTVVFFW+M+ +DFFS+ FGVR L  RP++MMAALYLQVSIISQALIFVTRSRSWS+ E PGLLL  AFVIAQLVATFIAVYANWSFARIEG GWGWAGVIWLYS +TY PLD+LKFGIRY+LSGKAW  LLENKTAFTTKKDYGK            TLHGLQP E
Sbjct:  670 DFSPFMVLIIAILNDGTIMTISKDRMKPSPQPDSWKLRDIFSTGVVLGGYQALMTVVFFWVMKDSDFFSNYFGVRPLSQRPEQMMAALYLQVSIISQALIFVTRSRSWSYAECPGLLLLGAFVIAQLVATFIAVYANWSFARIEGAGWGWAGVIWLYSFLTYIPLDLLKFGIRYVLSGKAWLNLLENKTAFTTKKDYGKEEREAQWAAAQRTLHGLQPAE 889          
BLAST of FC868595 vs. ExPASy Swiss-Prot
Match: PMA2_ARATH (ATPase 2, plasma membrane-type OS=Arabidopsis thaliana GN=AHA2 PE=1 SV=2)

HSP 1 Score: 342.428 bits (877), Expect = 1.281e-93
Identity = 169/220 (76.82%), Postives = 179/220 (81.36%), Query Frame = 2
Query:    5 DFSPFMSLIIAILNDGTIMTISKDRVKPSTQPDSWKLKEIFATGVVLGSYLAIMTVVFFWLMRKTDFFSDAFGVRSLRTRPDEMMAALYLQVSIISQALIFVTRSRSWSFIERPGLLLATAFVIAQLVATFIAVYANWSFARIEGCGWGWAGVIWLYSLVTYFPLDILKFGIRYILSGKAWDTLLENKTAFTTKKDYGKXXXXXXXXXXXXTLHGLQPPE 664
            DFS FM LIIAILNDGTIMTISKDRVKPS  PDSWKLKEIFATGVVLG Y AIMTV+FFW   KTDFFSD FGVRS+R    E+M A+YLQVSIISQALIFVTRSRSWSF+ERPG LL  AF+IAQL+AT IAVYANW FA+I G GWGWAGVIWLYS+VTYFPLD+ KF IRYILSGKAW  L ENKTAFT KKDYGK            TLHGLQP E
Sbjct:  670 DFSAFMVLIIAILNDGTIMTISKDRVKPSPTPDSWKLKEIFATGVVLGGYQAIMTVIFFWAAHKTDFFSDTFGVRSIRDNNHELMGAVYLQVSIISQALIFVTRSRSWSFVERPGALLMIAFLIAQLIATLIAVYANWEFAKIRGIGWGWAGVIWLYSIVTYFPLDVFKFAIRYILSGKAWLNLFENKTAFTMKKDYGKEEREAQWALAQRTLHGLQPKE 889          
BLAST of FC868595 vs. ExPASy Swiss-Prot
Match: PMA6_ARATH (ATPase 6, plasma membrane-type OS=Arabidopsis thaliana GN=AHA6 PE=2 SV=1)

HSP 1 Score: 340.502 bits (872), Expect = 4.868e-93
Identity = 163/221 (73.76%), Postives = 186/221 (84.16%), Query Frame = 2
Query:    5 DFSPFMSLIIAILNDGTIMTISKDRVKPSTQPDSWKLKEIFATGVVLGSYLAIMTVVFFWLMRKTDFFSDAFGVRSLRTRPDEMMAALYLQVSIISQALIFVTRSRSWSFIERPGLLLATAFVIAQLVATFIAVYANWSFARIEGCGWGWAGVIWLYSLVTYFPLDILKFGIRYILSGKAWDTLLENKTAFTTKKDYGKXXXXXXXXXXXXTLHGLQPPET 667
            DFSPFM LIIAILNDGTIMTISKDRVKPS  PDSWKLKEIFATGVVLG+Y+A++TVVFFWL   T FFSD FGVRSL+ + +E++A LYLQVSIISQALIFVTRSRSWSF+ERPGLLL  AF +AQL+AT IA YA+W FARI+GCGWGW GVIW+YS+VTY PLDILKF  RY LSGKAW+ ++EN+TAFTTKKDYG+            TLHGL+PPE+
Sbjct:  672 DFSPFMVLIIAILNDGTIMTISKDRVKPSPIPDSWKLKEIFATGVVLGTYMALVTVVFFWLAHDTTFFSDKFGVRSLQGKDEELIAVLYLQVSIISQALIFVTRSRSWSFVERPGLLLLIAFFVAQLIATLIATYAHWEFARIKGCGWGWCGVIWIYSIVTYIPLDILKFITRYTLSGKAWNNMIENRTAFTTKKDYGRGEREAQWALAQRTLHGLKPPES 892          
BLAST of FC868595 vs. ExPASy Swiss-Prot
Match: PMA1_ARATH (ATPase 1, plasma membrane-type OS=Arabidopsis thaliana GN=AHA1 PE=1 SV=3)

HSP 1 Score: 339.732 bits (870), Expect = 8.303e-93
Identity = 166/220 (75.45%), Postives = 183/220 (83.18%), Query Frame = 2
Query:    5 DFSPFMSLIIAILNDGTIMTISKDRVKPSTQPDSWKLKEIFATGVVLGSYLAIMTVVFFWLMRKTDFFSDAFGVRSLRTRPDEMMAALYLQVSIISQALIFVTRSRSWSFIERPGLLLATAFVIAQLVATFIAVYANWSFARIEGCGWGWAGVIWLYSLVTYFPLDILKFGIRYILSGKAWDTLLENKTAFTTKKDYGKXXXXXXXXXXXXTLHGLQPPE 664
            DFS FM LIIAILNDGTIMTISKDRVKPS  PDSWKLKEIFATG+VLG Y AIM+V+FFW   KTDFFSD FGVRS+R   DE+M A+YLQVSIISQALIFVTRSRSWSF+ERPG LL  AFVIAQLVAT IAVYA+W+FA+++G GWGWAGVIW+YS+VTYFP DILKF IRYILSGKAW +L +N+TAFTTKKDYG             TLHGLQP E
Sbjct:  670 DFSAFMVLIIAILNDGTIMTISKDRVKPSPTPDSWKLKEIFATGIVLGGYQAIMSVIFFWAAHKTDFFSDKFGVRSIRDNNDELMGAVYLQVSIISQALIFVTRSRSWSFVERPGALLMIAFVIAQLVATLIAVYADWTFAKVKGIGWGWAGVIWIYSIVTYFPQDILKFAIRYILSGKAWASLFDNRTAFTTKKDYGIGEREAQWAQAQRTLHGLQPKE 889          
BLAST of FC868595 vs. ExPASy Swiss-Prot
Match: PMA8_ARATH (ATPase 8, plasma membrane-type OS=Arabidopsis thaliana GN=AHA8 PE=1 SV=1)

HSP 1 Score: 338.961 bits (868), Expect = 1.416e-92
Identity = 165/220 (75.00%), Postives = 181/220 (82.27%), Query Frame = 2
Query:    5 DFSPFMSLIIAILNDGTIMTISKDRVKPSTQPDSWKLKEIFATGVVLGSYLAIMTVVFFWLMRKTDFFSDAFGVRSLRTRPDEMMAALYLQVSIISQALIFVTRSRSWSFIERPGLLLATAFVIAQLVATFIAVYANWSFARIEGCGWGWAGVIWLYSLVTYFPLDILKFGIRYILSGKAWDTLLENKTAFTTKKDYGKXXXXXXXXXXXXTLHGLQPPE 664
            DF+PFM LIIAILNDGTIMTISKDRVKPS  PDSWKL EIFATGVVLG+Y+A+ TV+FFWL   TDFFS  FGVRS++   +E+MAALYLQVSIISQALIFVTRSRSWSF+ERPG LL  AFVIAQLVAT IAVYANW FARI GCGWGWAG IW+YS++TY PLDILKF IRY L+GKAWD ++  KTAFTTKKDYGK            TLHGL PPE
Sbjct:  673 DFAPFMVLIIAILNDGTIMTISKDRVKPSPVPDSWKLNEIFATGVVLGTYMALTTVLFFWLAHDTDFFSKTFGVRSIQGNEEELMAALYLQVSIISQALIFVTRSRSWSFVERPGFLLLIAFVIAQLVATLIAVYANWGFARIVGCGWGWAGGIWVYSIITYIPLDILKFIIRYALTGKAWDNMINQKTAFTTKKDYGKGEREAQWALAQRTLHGLPPPE 892          
BLAST of FC868595 vs. ExPASy Swiss-Prot
Match: PMA1_WHEAT (Plasma membrane ATPase OS=Triticum aestivum GN=ha1 PE=2 SV=1)

HSP 1 Score: 337.035 bits (863), Expect = 5.382e-92
Identity = 163/220 (74.09%), Postives = 186/220 (84.55%), Query Frame = 2
Query:    5 DFSPFMSLIIAILNDGTIMTISKDRVKPSTQPDSWKLKEIFATGVVLGSYLAIMTVVFFWLMRKTDFFSDAFGVRSLRTRPDEMMAALYLQVSIISQALIFVTRSRSWSFIERPGLLLATAFVIAQLVATFIAVYANWSFARIEGCGWGWAGVIWLYSLVTYFPLDILKFGIRYILSGKAWDTLLENKTAFTTKKDYGKXXXXXXXXXXXXTLHGLQPPE 664
            DF+PFM LIIAILNDGTIMTISKDRVKPS  PDSWKL EIFATGVVLG+YLA++TVVFFWL+ KTDFF++ FGV S+R    + M+ALYLQVSI+SQALIFVTRSRSWSF+ERPG LL TAF++AQLVAT IAVYANW FARI+G GWGWAGVIWL+S+V YFPLDI KF IR++LSG+AWD LL+NKTAFTTK++YGK            TLHGLQ PE
Sbjct:  670 DFAPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLNEIFATGVVLGTYLALVTVVFFWLIHKTDFFTNKFGVESIRNTEFKEMSALYLQVSIVSQALIFVTRSRSWSFVERPGFLLVTAFLLAQLVATLIAVYANWDFARIKGIGWGWAGVIWLFSIVFYFPLDIFKFFIRFVLSGRAWDNLLQNKTAFTTKENYGKGEREAQWATAQRTLHGLQAPE 889          
BLAST of FC868595 vs. ExPASy Swiss-Prot
Match: PMA9_ARATH (ATPase 9, plasma membrane-type OS=Arabidopsis thaliana GN=AHA9 PE=2 SV=2)

HSP 1 Score: 336.265 bits (861), Expect = 9.180e-92
Identity = 163/222 (73.42%), Postives = 183/222 (82.43%), Query Frame = 2
Query:    5 DFSPFMSLIIAILNDGTIMTISKDRVKPSTQPDSWKLKEIFATGVVLGSYLAIMTVVFFWLMRKTDFFSDAFGVRSLRTRPDEMMAALYLQVSIISQALIFVTRSRSWSFIERPGLLLATAFVIAQLVATFIAVYANWSFARIEGCGWGWAGVIWLYSLVTYFPLDILKFGIRYILSGKAWDTLLENKTAFTTKKDYGKXXXXXXXXXXXXTLHGLQPPETT 670
            DFSPFM LI+AILNDGTIMTISKDRVKPS  PDSWKLKEIFATGVVLG+YLA+MTVVFFW    TDFFS  FGVRS+   P E+ AA+YLQVSI+SQALIFVTRSRSWS++ERPG  L +AF +AQL+AT IAVYANW+FARI G GWGWAGVIWLYS+V Y PLDILKF IRY LSG+AWD ++ENKTAFT+KKDYGK            TLHGLQP +T+
Sbjct:  675 DFSPFMVLIVAILNDGTIMTISKDRVKPSPLPDSWKLKEIFATGVVLGTYLAVMTVVFFWAAESTDFFSAKFGVRSISGNPHELTAAVYLQVSIVSQALIFVTRSRSWSYVERPGFWLISAFFMAQLIATLIAVYANWNFARIRGIGWGWAGVIWLYSIVFYIPLDILKFIIRYSLSGRAWDNVIENKTAFTSKKDYGKGEREAQWAQAQRTLHGLQPAQTS 896          
BLAST of FC868595 vs. ExPASy Swiss-Prot
Match: PMA3_ARATH (ATPase 3, plasma membrane-type OS=Arabidopsis thaliana GN=AHA3 PE=1 SV=2)

HSP 1 Score: 322.013 bits (824), Expect = 1.792e-87
Identity = 160/221 (72.40%), Postives = 175/221 (79.19%), Query Frame = 2
Query:    5 DFSPFMSLIIAILNDGTIMTISKDRVKPSTQPDSWKLKEIFATGVVLGSYLAIMTVVFFWLMRKTDFFSDAFGVRSLRTRPDEMMAALYLQVSIISQALIFVTRSRSWSFIERPGLLLATAFVIAQLVATFIAVYANWSFARIEGCGWGWAGVIWLYSLVTYFPLDILKFGIRYILSGKAWDTLLENKTAFTTKKDYGKXXXXXXXXXXXXTLHGLQPPET 667
            DFSPFM LIIAILNDGTIMTISKDRVKPS  PDSWKLKEIFATGVVLG Y+AIMTVVFFW   KTDFF   F VR LR    EMM+ALYLQVSI+SQALIFVTRSRSWSF ERPG  L  AF +AQL+AT IAVY NW FARI+G GWGWAGVIWLYS+V YFPLDI+KF IRYIL+G AW  +++N+TAFTTK++YG             TLHGLQ  ET
Sbjct:  671 DFSPFMVLIIAILNDGTIMTISKDRVKPSPTPDSWKLKEIFATGVVLGGYMAIMTVVFFWAAYKTDFFPRTFHVRDLRGSEHEMMSALYLQVSIVSQALIFVTRSRSWSFTERPGYFLLIAFWVAQLIATAIAVYGNWEFARIKGIGWGWAGVIWLYSIVFYFPLDIMKFAIRYILAGTAWKNIIDNRTAFTTKQNYGIEEREAQWAHAQRTLHGLQNTET 891          
The following BLAST results are available for this feature:
BLAST of FC868595 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
PMA1_ORYSJ5.937e-9978.03Plasma membrane ATPase OS=Oryza sativa subsp. japo... [more]
PMA4_NICPL2.256e-9878.38Plasma membrane ATPase 4 OS=Nicotiana plumbaginifo... [more]
PMA5_ARATH7.257e-9779.09ATPase 5, plasma membrane-type OS=Arabidopsis thal... [more]
PMA2_ARATH1.281e-9376.82ATPase 2, plasma membrane-type OS=Arabidopsis thal... [more]
PMA6_ARATH4.868e-9373.76ATPase 6, plasma membrane-type OS=Arabidopsis thal... [more]
PMA1_ARATH8.303e-9375.45ATPase 1, plasma membrane-type OS=Arabidopsis thal... [more]
PMA8_ARATH1.416e-9275.00ATPase 8, plasma membrane-type OS=Arabidopsis thal... [more]
PMA1_WHEAT5.382e-9274.09Plasma membrane ATPase OS=Triticum aestivum GN=ha1... [more]
PMA9_ARATH9.180e-9273.42ATPase 9, plasma membrane-type OS=Arabidopsis thal... [more]
PMA3_ARATH1.792e-8772.40ATPase 3, plasma membrane-type OS=Arabidopsis thal... [more]

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Properties
Property NameValue
Genbank descriptionC31002D06EF AbioticL1 Citrus clementina cDNA clone C31002D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868595 ID=FC868595; Name=FC868595; organism=Citrus clementina; type=EST; length=679bp
GTTAGACTTTTCTCCATTCATGTCTCTGATTATTGCCATTTTAAATGACG
GAACAATCATGACAATTTCAAAGGATCGTGTTAAGCCGTCCACTCAACCA
GACAGCTGGAAACTAAAAGAGATTTTTGCCACTGGCGTTGTGCTTGGAAG
TTACTTGGCCATCATGACTGTTGTATTCTTCTGGCTAATGAGGAAGACTG
ACTTTTTCTCGGACGCGTTTGGTGTAAGATCATTAAGAACTAGACCCGAT
GAGATGATGGCCGCTTTATACTTGCAAGTCAGTATTATTAGCCAGGCCCT
TATTTTTGTCACGAGGTCCCGCAGCTGGTCCTTTATTGAACGCCCTGGAC
TTCTCTTAGCCACGGCATTTGTGATTGCTCAGCTTGTAGCAACTTTCATA
GCGGTCTATGCAAATTGGAGTTTTGCACGGATAGAGGGTTGTGGCTGGGG
CTGGGCCGGGGTAATCTGGCTTTACAGTCTGGTAACATATTTTCCTCTTG
ACATACTCAAGTTCGGAATCCGCTACATCCTCAGTGGAAAGGCTTGGGAT
ACTCTTCTGGAGAACAAGACTGCCTTCACTACCAAGAAAGACTACGGTAA
AGAAGAGAGAGAGGCACAATGGGCAGCCGCACAAAGGACCTTGCACGGTC
TTCAACCACCCGAAACAACCGCATTTTCT
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