FC868597

Overview
NameFC868597
Unique NameFC868597
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length597
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9359 contig Ccv1_Contig9359:2..598. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC868597 vs. ExPASy Swiss-Prot
Match: HBPL1_ARATH (Heme-binding-like protein At3g10130, chloroplastic OS=Arabidopsis thaliana GN=At3g10130 PE=1 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 2.027e-54
Identity = 110/147 (74.83%), Postives = 125/147 (85.03%), Query Frame = 3 
Query:  156 ISAFEARVSLVFALASQTSSLSQRLLMDLATETAKYVFPKRFESQ-NLEEALMAVPDLETVKFKVLSRRGQYEIREVESYFIAETMMPGRTGFDFNGASRSFNVLAEYLFGKNT*RETMEMTTPVITRKTQSDGEKMAMTTPVISKK 593
            +SA E+RVSLV ALASQ SS+SQRLL DLA ETAKYVFPKRF+S  NLEEA M+VPDLET+ F+VL R  +YEIR+VE YF+AET+MPG TGFD  GAS+SFNVLAEYLFGKNT +E MEMTTPV+TRK QS GEKM MTTPVI+ K
Sbjct:   57 VSATESRVSLVLALASQASSVSQRLLADLAMETAKYVFPKRFDSSTNLEEAFMSVPDLETMNFRVLFRTDKYEIRQVEPYFVAETIMPGETGFDSYGASKSFNVLAEYLFGKNTIKEKMEMTTPVVTRKVQSVGEKMEMTTPVITSK 203
The following BLAST results are available for this feature:
BLAST of FC868597 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
HBPL1_ARATH2.027e-5474.83Heme-binding-like protein At3g10130, chloroplastic... [more]
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Properties
Property NameValue
Genbank descriptionC31002D08EF AbioticL1 Citrus clementina cDNA clone C31002D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868597 ID=FC868597; Name=FC868597; organism=Citrus clementina; type=EST; length=597bp
TCCAACAGAATTTCAAAAAGAAAATGCAGCTCTGCAAGCCTTCACTGTCA
CTGATCAGTCCCTGCACTCTCCCCAAAACCCTAACCCTAAAACCCACCAA
GAAACCATCCTTAACAATCATCAATTCTATCACCACCAATAATGAAAGAA
AACCCATATCAGCTTTTGAAGCTAGGGTCTCTCTCGTCTTCGCTCTCGCA
TCCCAAACTTCATCCCTCTCTCAGCGACTTTTAATGGACTTAGCAACTGA
AACTGCCAAATACGTGTTCCCAAAAAGGTTCGAGAGCCAGAATTTGGAGG
AAGCCCTGATGGCAGTTCCAGATCTTGAGACGGTGAAATTCAAGGTTTTG
AGTAGGAGAGGTCAATATGAGATAAGAGAAGTTGAGTCTTACTTCATTGC
AGAAACAATGATGCCTGGGAGAACTGGTTTCGATTTTAATGGTGCGTCTC
GATCTTTCAATGTGTTGGCTGAGTACCTGTTTGGCAAGAATACATAAAGG
GAGACAATGGAAATGACCACCCCTGTTATTACACGTAAGACTCAATCTGA
TGGGGAGAAAATGGCAATGACAACACCTGTGATATCCAAGAAGCTGG
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